EMLSAG00000000268, EMLSAG00000000268-683034 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000268
Unique NameEMLSAG00000000268-683034
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000268 vs. C. finmarchicus
Match: gi|592848872|gb|GAXK01108672.1| (TSA: Calanus finmarchicus comp297867_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 46.2098 bits (108), Expect = 4.633e-5
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 0 
Query:   69 FSAVLYALDVYATSRIDRMLVDSFGPEIFERFSHAY 104
             S  LY LD +ATSRID ML+  +GPEI++R++  Y
Sbjct:  501 LSFALYMLDNWATSRIDNMLMTYYGPEIYDRYTSVY 608
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BLAST of EMLSAG00000000268 vs. C. finmarchicus
Match: gi|592848871|gb|GAXK01108673.1| (TSA: Calanus finmarchicus comp297867_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 46.2098 bits (108), Expect = 4.936e-5
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 0 
Query:   69 FSAVLYALDVYATSRIDRMLVDSFGPEIFERFSHAY 104
             S  LY LD +ATSRID ML+  +GPEI++R++  Y
Sbjct:  365 LSFALYMLDNWATSRIDNMLMTYYGPEIYDRYTSVY 472
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BLAST of EMLSAG00000000268 vs. C. finmarchicus
Match: gi|592818220|gb|GAXK01136348.1| (TSA: Calanus finmarchicus comp1169660_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 1.561e-3
Identity = 16/41 (39.02%), Postives = 30/41 (73.17%), Query Frame = 0 
Query:  141 SESRIMGLIHLAYDIYNAADESLREPECRKKLVCEVYSRPD 181
            S ++I+  I++ +DI+N  D SL+  EC+K+ +CE++ RP+
Sbjct:  244 SFTKIVEWIYMVHDIWNFGDSSLKSLECQKRTLCEIW-RPE 363
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BLAST of EMLSAG00000000268 vs. C. finmarchicus
Match: gi|592857471|gb|GAXK01100091.1| (TSA: Calanus finmarchicus comp6040_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 38.5058 bits (88), Expect = 2.133e-2
Identity = 26/91 (28.57%), Postives = 47/91 (51.65%), Query Frame = 0 
Query:  145 IMGLIHLAYDIYNAADESLREPECRKKLVCEVYSRPDDVLGEGYLGKTIKKGMEYLP--------YIQERYNVAAEILDGKKEAEEHRVCE 227
            ++ L+ +A DIY+  +    + +C+KK++CE    P D+ G G  G ++K G++Y           I ++   AA + D  K  + +R CE
Sbjct: 2221 VLTLLGVATDIYSKLN--YDDTDCQKKIICEFMEEP-DMFGSG--GASVKSGVKYAASWLAPLGFSIVDQITEAATLNDEGKCEQRYRQCE 2478
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BLAST of EMLSAG00000000268 vs. C. finmarchicus
Match: gi|592922765|gb|GAXK01035624.1| (TSA: Calanus finmarchicus comp1373662_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 2.053e-1
Identity = 12/33 (36.36%), Postives = 23/33 (69.70%), Query Frame = 0 
Query:   72 VLYALDVYATSRIDRMLVDSFGPEIFERFSHAY 104
            +LY +D++AT R+D +L   +GPE+++ +   Y
Sbjct:  159 LLYRVDIWATERLDTLLESYYGPELYDIYQQRY 257
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BLAST of EMLSAG00000000268 vs. C. finmarchicus
Match: gi|592922766|gb|GAXK01035623.1| (TSA: Calanus finmarchicus comp1373662_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 3.131e-1
Identity = 12/33 (36.36%), Postives = 23/33 (69.70%), Query Frame = 0 
Query:   72 VLYALDVYATSRIDRMLVDSFGPEIFERFSHAY 104
            +LY +D++AT R+D +L   +GPE+++ +   Y
Sbjct:  263 LLYRVDIWATERLDTLLESYYGPELYDIYQQRY 361
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BLAST of EMLSAG00000000268 vs. C. finmarchicus
Match: gi|592842964|gb|GAXK01114580.1| (TSA: Calanus finmarchicus comp175160_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 3.808e-1
Identity = 22/94 (23.40%), Postives = 51/94 (54.26%), Query Frame = 0 
Query:  143 SRIMGLIHLAYDIYNAADESLREPECRKKLVCEVYSRPDDVLGEGYLGKT--IKKGMEYLPYIQERYNVAAEILDGKKEAEEHR-VCETKKASC 233
            ++++  I + ++ +N  + ++   +C+K+ +CE++ RP++  G  YL K   I K  E +       ++  E+ D ++EA ++R  C+   + C
Sbjct:  435 AKVVEWISVMHEAWNFTESTVTSMDCQKRTICELW-RPEN--GFKYLEKMDLIFKYAEMMNLPDGLLDMIDELSDARQEALDNRETCKEMYSDC 707
[Close]
BLAST of EMLSAG00000000268 vs. C. finmarchicus
Match: gi|592842966|gb|GAXK01114578.1| (TSA: Calanus finmarchicus comp175160_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 3.823e-1
Identity = 22/94 (23.40%), Postives = 51/94 (54.26%), Query Frame = 0 
Query:  143 SRIMGLIHLAYDIYNAADESLREPECRKKLVCEVYSRPDDVLGEGYLGKT--IKKGMEYLPYIQERYNVAAEILDGKKEAEEHR-VCETKKASC 233
            ++++  I + ++ +N  + ++   +C+K+ +CE++ RP++  G  YL K   I K  E +       ++  E+ D ++EA ++R  C+   + C
Sbjct:  435 AKVVEWISVMHEAWNFTESTVTSMDCQKRTICELW-RPEN--GFKYLEKMDLIFKYAEMMNLPDGLLDMIDELSDARQEALDNRETCKEMYSDC 707
[Close]
BLAST of EMLSAG00000000268 vs. C. finmarchicus
Match: gi|592842965|gb|GAXK01114579.1| (TSA: Calanus finmarchicus comp175160_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 6.058e-1
Identity = 54/206 (26.21%), Postives = 93/206 (45.15%), Query Frame = 0 
Query:   40 EPRTFD-------LTLGGFNXXXXXXXXXXXXXXXXFSAVLYALDVYATSRIDRMLVDSFGPEIFERFSHAYASQDTDDLLAG--TYEDIYEGXXXXXXXQASEETKITKSESRIMGLIHLAYDIYNAADESLREPECRKKLVCEVYSRPDDVLGEGYLGKT--IKKGMEYLPYIQERYNVAAEILDGKKEAEEHR-VCETKKASC 233
            +PR  D       LT G FN+T+  T  +II  ++LF   LYALDVY       +   S+     +RF H     D D +      Y D +  + R  +      TKI +     + L++ A+D     + ++   +C+K+ +CE++ RP++  G  Y+ K     K  E +       ++  E  D ++EA ++R  C+   + C
Sbjct:  162 DPRIIDTIFNTSGLTDGLFNNTLFQTAGIIILGIILFEVALYALDVYYNQTY--LGTTSYT----QRFDH-----DPDSIFQDYPPYPDPFASTYRSNQGWNFNLTKIVE----WISLLNEAWDF---TENTMTSLDCQKRTICELW-RPEN--GFKYMDKMDLFFKYAEMMNLPDGLIDMIDEFSDARQEALDNRETCKEMYSDC 716
[Close]
BLAST of EMLSAG00000000268 vs. C. finmarchicus
Match: gi|592842967|gb|GAXK01114577.1| (TSA: Calanus finmarchicus comp175160_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 6.079e-1
Identity = 54/206 (26.21%), Postives = 93/206 (45.15%), Query Frame = 0 
Query:   40 EPRTFD-------LTLGGFNXXXXXXXXXXXXXXXXFSAVLYALDVYATSRIDRMLVDSFGPEIFERFSHAYASQDTDDLLAG--TYEDIYEGXXXXXXXQASEETKITKSESRIMGLIHLAYDIYNAADESLREPECRKKLVCEVYSRPDDVLGEGYLGKT--IKKGMEYLPYIQERYNVAAEILDGKKEAEEHR-VCETKKASC 233
            +PR  D       LT G FN+T+  T  +II  ++LF   LYALDVY       +   S+     +RF H     D D +      Y D +  + R  +      TKI +     + L++ A+D     + ++   +C+K+ +CE++ RP++  G  Y+ K     K  E +       ++  E  D ++EA ++R  C+   + C
Sbjct:  162 DPRIIDTIFNTSGLTDGLFNNTLFQTAGIIILGIILFEVALYALDVYYNQTY--LGTTSYT----QRFDH-----DPDSIFQDYPPYPDPFASTYRSNQGWNFNLTKIVE----WISLLNEAWDF---TENTMTSLDCQKRTICELW-RPEN--GFKYMDKMDLFFKYAEMMNLPDGLIDMIDEFSDARQEALDNRETCKEMYSDC 716
[Close]
BLAST of EMLSAG00000000268 vs. L. salmonis peptides
Match: EMLSAP00000000268 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1041:11018:12226:-1 gene:EMLSAG00000000268 transcript:EMLSAT00000000268 description:"maker-LSalAtl2s1041-augustus-gene-0.31")

HSP 1 Score: 537.724 bits (1384), Expect = 0.000e+0
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0 
Query:    1 MEKNSLMFLSVVVLIGTLSPGISAIDHHQDKVNEEELGLEPRTFDLTLGGFNSTIAITGTLIIGSLLLFSAVLYALDVYATSRIDRMLVDSFGPEIFERFSHAYASQDTDDLLAGTYEDIYEGSSRRRRRQASEETKITKSESRIMGLIHLAYDIYNAADESLREPECRKKLVCEVYSRPDDVLGEGYLGKTIKKGMEYLPYIQERYNVAAEILDGKKEAEEHRVCETKKASCDHLERVLNGMMKENAFLNHKGHGEQVQN 261
            MEKNSLMFLSVVVLIGTLSPGISAIDHHQDKVNEEELGLEPRTFDLTLGGFNSTIAITGTLIIGSLLLFSAVLYALDVYATSRIDRMLVDSFGPEIFERFSHAYASQDTDDLLAGTYEDIYEGSSRRRRRQASEETKITKSESRIMGLIHLAYDIYNAADESLREPECRKKLVCEVYSRPDDVLGEGYLGKTIKKGMEYLPYIQERYNVAAEILDGKKEAEEHRVCETKKASCDHLERVLNGMMKENAFLNHKGHGEQVQN
Sbjct:    1 MEKNSLMFLSVVVLIGTLSPGISAIDHHQDKVNEEELGLEPRTFDLTLGGFNSTIAITGTLIIGSLLLFSAVLYALDVYATSRIDRMLVDSFGPEIFERFSHAYASQDTDDLLAGTYEDIYEGSSRRRRRQASEETKITKSESRIMGLIHLAYDIYNAADESLREPECRKKLVCEVYSRPDDVLGEGYLGKTIKKGMEYLPYIQERYNVAAEILDGKKEAEEHRVCETKKASCDHLERVLNGMMKENAFLNHKGHGEQVQN 261
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000268 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000268 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 12
Match NameE-valueIdentityDescription
gi|592848872|gb|GAXK01108672.1|4.633e-552.78TSA: Calanus finmarchicus comp297867_c1_seq1 trans... [more]
gi|592848871|gb|GAXK01108673.1|4.936e-552.78TSA: Calanus finmarchicus comp297867_c1_seq2 trans... [more]
gi|592818220|gb|GAXK01136348.1|1.561e-339.02TSA: Calanus finmarchicus comp1169660_c0_seq1 tran... [more]
gi|592857471|gb|GAXK01100091.1|2.133e-228.57TSA: Calanus finmarchicus comp6040_c0_seq2 transcr... [more]
gi|592922765|gb|GAXK01035624.1|2.053e-136.36TSA: Calanus finmarchicus comp1373662_c0_seq2 tran... [more]
gi|592922766|gb|GAXK01035623.1|3.131e-136.36TSA: Calanus finmarchicus comp1373662_c0_seq1 tran... [more]
gi|592842964|gb|GAXK01114580.1|3.808e-123.40TSA: Calanus finmarchicus comp175160_c0_seq4 trans... [more]
gi|592842966|gb|GAXK01114578.1|3.823e-123.40TSA: Calanus finmarchicus comp175160_c0_seq2 trans... [more]
gi|592842965|gb|GAXK01114579.1|6.058e-126.21TSA: Calanus finmarchicus comp175160_c0_seq3 trans... [more]
gi|592842967|gb|GAXK01114577.1|6.079e-126.21TSA: Calanus finmarchicus comp175160_c0_seq1 trans... [more]

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BLAST of EMLSAG00000000268 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000002680.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1041:1101... [more]
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BLAST of EMLSAG00000000268 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000268 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000268 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000268 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1041supercontigLSalAtl2s1041:11018..12226 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1041-augustus-gene-0.31
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000268 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000268EMLSAT00000000268-696115Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1041:11018..12226-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000268-683034 ID=EMLSAG00000000268-683034|Name=EMLSAG00000000268|organism=Lepeophtheirus salmonis|type=gene|length=1209bp|location=Sequence derived from alignment at LSalAtl2s1041:11018..12226- (Lepeophtheirus salmonis)
ATGGAAAAGAATAGTCTAATGTTCTTATCCGTCGTAGTCCTTATAGGCAC
CCTCTCTCCTGGGATCAGCGCAATTGACCATCATCAGGATAAAGTGAATG
AGGAGGAATTGGGTTTGGAGCCACGAACTTTTGATTTGACTCTCGGAGGT
TTCAACTCAACCATAGCAATCACTGGTACTCTCATCATTGGAAGTTTACT
CCTTTTCTCAGCTGTTCTCTATGCCTTGGATGTTTATGCCACATCCCGCA
TTGATAGAATGCTTGTGGACTCCTTTGGTCCTGAGATTTTTGAACGGTTC
TCCCATGCCTATGCATCCCAAGATACGTAAGTACTCTTGAATCATTGATA
TAGAATAAAACCCCTTGGAGTCAGACTAATGGTGACCATTTTAATTATTC
ATTGAGAATTACTAACTGTGCATTTCTTTGCATAATTTAATAGTCATCTG
TTGAATTAATTTCAGTCTACATAAGACTACAAATGTCGTTAAACTTTACT
TAGAGGCATGCTGTGTAACCTTATGTACGTATGTTCTGTATTAATACTGA
AAAGTTAATTATAAAATATATTTTCGCCAAAAATTTCCACATAATTAACA
ACAAATAATGAAAGTTATTACTAACACATATGCCATTTGTACTCAAAAAT
TTCTCTATTTGGCTTTGAGCAATTATTTCACTTTCATTCAAAATGAAAAT
ATATAATAGCTTTTGTTCATTGATTAATCTTTTTTGTCATATTTTACAGG
GATGACCTTTTAGCAGGCACCTATGAAGACATTTATGAAGGATCTTCTCG
ACGCCGCCGCCGACAAGCCTCAGAAGAAACAAAAATAACCAAGAGCGAGA
GCAGAATAATGGGACTCATCCATCTTGCCTATGACATCTATAACGCRGCT
GATGAGAGTCTTCGSGAGCCGGAATGTCGAAAAAAGCTAGTCTGTGAGGT
GTACTCACGACCTGATGACGTACTTGGAGAGGGCTATTTGGGCAAAACCA
TCAAAAAAGGGATGGAGTATCTACCCTATATCCAAGAAAGATACAATGTT
GCCGCAGAGATCCTAGATGGAAAGAAAGAGGCTGAAGAACATCGTGTCTG
TGAAACTAAAAAGGCCTCTTGCGATCATTTGGAGAGGGTTTTAAATGGAA
TGATGAAAGAAAACGCTTTTCTGAATCATAAAGGGCATGGTGAACAAGTT
CAGAACTAG
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