EMLSAG00000000281, EMLSAG00000000281-683047 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000281
Unique NameEMLSAG00000000281-683047
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000281 vs. C. finmarchicus
Match: gi|592796268|gb|GAXK01158300.1| (TSA: Calanus finmarchicus comp66755_c8_seq5 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 3.207e-4
Identity = 16/41 (39.02%), Postives = 24/41 (58.54%), Query Frame = 0 
Query:   13 NCGFDVYXKYVQHVEETCVATGPSSRRKTRGGVFSRILSDR 53
            NC FDV+ KYV  +EE+CV    S +++ R  +    L+ R
Sbjct: 1294 NCSFDVHKKYVHKIEESCVGPSNSKKKRNRTSILPMGLASR 1416
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BLAST of EMLSAG00000000281 vs. C. finmarchicus
Match: gi|592796288|gb|GAXK01158280.1| (TSA: Calanus finmarchicus comp66755_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 3.211e-4
Identity = 16/41 (39.02%), Postives = 24/41 (58.54%), Query Frame = 0 
Query:   13 NCGFDVYXKYVQHVEETCVATGPSSRRKTRGGVFSRILSDR 53
            NC FDV+ KYV  +EE+CV    S +++ R  +    L+ R
Sbjct: 2176 NCSFDVHKKYVHKIEESCVGPSNSKKKRNRTSILPMGLASR 2298
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BLAST of EMLSAG00000000281 vs. C. finmarchicus
Match: gi|592796269|gb|GAXK01158299.1| (TSA: Calanus finmarchicus comp66755_c8_seq4 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 3.223e-4
Identity = 16/41 (39.02%), Postives = 24/41 (58.54%), Query Frame = 0 
Query:   13 NCGFDVYXKYVQHVEETCVATGPSSRRKTRGGVFSRILSDR 53
            NC FDV+ KYV  +EE+CV    S +++ R  +    L+ R
Sbjct: 1497 NCSFDVHKKYVHKIEESCVGPSNSKKKRNRTSILPMGLASR 1619
[Close]
BLAST of EMLSAG00000000281 vs. C. finmarchicus
Match: gi|592796270|gb|GAXK01158298.1| (TSA: Calanus finmarchicus comp66755_c8_seq3 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 3.272e-4
Identity = 16/41 (39.02%), Postives = 24/41 (58.54%), Query Frame = 0 
Query:   13 NCGFDVYXKYVQHVEETCVATGPSSRRKTRGGVFSRILSDR 53
            NC FDV+ KYV  +EE+CV    S +++ R  +    L+ R
Sbjct: 2257 NCSFDVHKKYVHKIEESCVGPSNSKKKRNRTSILPMGLASR 2379
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BLAST of EMLSAG00000000281 vs. C. finmarchicus
Match: gi|592796271|gb|GAXK01158297.1| (TSA: Calanus finmarchicus comp66755_c8_seq2 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 3.325e-4
Identity = 16/41 (39.02%), Postives = 24/41 (58.54%), Query Frame = 0 
Query:   13 NCGFDVYXKYVQHVEETCVATGPSSRRKTRGGVFSRILSDR 53
            NC FDV+ KYV  +EE+CV    S +++ R  +    L+ R
Sbjct: 3525 NCSFDVHKKYVHKIEESCVGPSNSKKKRNRTSILPMGLASR 3647
[Close]
BLAST of EMLSAG00000000281 vs. C. finmarchicus
Match: gi|592796272|gb|GAXK01158296.1| (TSA: Calanus finmarchicus comp66755_c8_seq1 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 3.330e-4
Identity = 16/41 (39.02%), Postives = 24/41 (58.54%), Query Frame = 0 
Query:   13 NCGFDVYXKYVQHVEETCVATGPSSRRKTRGGVFSRILSDR 53
            NC FDV+ KYV  +EE+CV    S +++ R  +    L+ R
Sbjct: 3681 NCSFDVHKKYVHKIEESCVGPSNSKKKRNRTSILPMGLASR 3803
[Close]
BLAST of EMLSAG00000000281 vs. C. finmarchicus
Match: gi|592903250|gb|GAXK01055125.1| (TSA: Calanus finmarchicus comp84459_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 9.608e-1
Identity = 15/48 (31.25%), Postives = 25/48 (52.08%), Query Frame = 0 
Query:   26 VEETCVATGPSSRRKTRGGVFSRILSDRDLSAAVHPWKSTTQSPNTTK 73
            V++   A GP  +  TRGGV + ++  R L+  +HP  +   S  T +
Sbjct:  425 VDKGMFANGPGRQTYTRGGVRAPLVQTRFLTNKIHPKTAKILSHQTKR 568
[Close]
BLAST of EMLSAG00000000281 vs. C. finmarchicus
Match: gi|592831919|gb|GAXK01125625.1| (TSA: Calanus finmarchicus comp25014_c6_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 1.987e+0
Identity = 15/43 (34.88%), Postives = 23/43 (53.49%), Query Frame = 0 
Query:   65 TTQSPNTTKEIIPSSSICNDDFLDDPNSTLLSVSSALLFDQTV 107
            T  +P T+KEII   +IC+    + P + +L +   LL D  V
Sbjct: 2677 TKSNPPTSKEIIQCRNICSPSIRNPPQAGVLVIEPDLLHDSGV 2805
[Close]
BLAST of EMLSAG00000000281 vs. L. salmonis peptides
Match: EMLSAP00000000281 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1042:16231:20033:1 gene:EMLSAG00000000281 transcript:EMLSAT00000000281 description:"snap_masked-LSalAtl2s1042-processed-gene-0.17")

HSP 1 Score: 237.269 bits (604), Expect = 1.431e-81
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 
Query:    1 MKGYVVVLELSLNCGFDVYXKYVQHVEETCVATGPSSRRKTRGGVFSRILSDRDLSAAVHPWKSTTQSPNTTKEIIPSSSICNDDFLDDPNSTLLSVSSALLFDQTVYILEVKSHL 116
            MKGYVVVLELSLNCGFDVYXKYVQHVEETCVATGPSSRRKTRGGVFSRILSDRDLSAAVHPWKSTTQSPNTTKEIIPSSSICNDDFLDDPNSTLLSVSSALLFDQTVYILEVKSHL
Sbjct:    1 MKGYVVVLELSLNCGFDVYXKYVQHVEETCVATGPSSRRKTRGGVFSRILSDRDLSAAVHPWKSTTQSPNTTKEIIPSSSICNDDFLDDPNSTLLSVSSALLFDQTVYILEVKSHL 116
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000281 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000281 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 8
Match NameE-valueIdentityDescription
gi|592796268|gb|GAXK01158300.1|3.207e-439.02TSA: Calanus finmarchicus comp66755_c8_seq5 transc... [more]
gi|592796288|gb|GAXK01158280.1|3.211e-439.02TSA: Calanus finmarchicus comp66755_c1_seq1 transc... [more]
gi|592796269|gb|GAXK01158299.1|3.223e-439.02TSA: Calanus finmarchicus comp66755_c8_seq4 transc... [more]
gi|592796270|gb|GAXK01158298.1|3.272e-439.02TSA: Calanus finmarchicus comp66755_c8_seq3 transc... [more]
gi|592796271|gb|GAXK01158297.1|3.325e-439.02TSA: Calanus finmarchicus comp66755_c8_seq2 transc... [more]
gi|592796272|gb|GAXK01158296.1|3.330e-439.02TSA: Calanus finmarchicus comp66755_c8_seq1 transc... [more]
gi|592903250|gb|GAXK01055125.1|9.608e-131.25TSA: Calanus finmarchicus comp84459_c0_seq1 transc... [more]
gi|592831919|gb|GAXK01125625.1|1.987e+034.88TSA: Calanus finmarchicus comp25014_c6_seq1 transc... [more]
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BLAST of EMLSAG00000000281 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000002811.431e-81100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1042:1623... [more]
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BLAST of EMLSAG00000000281 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000281 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000281 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000281 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1042supercontigLSalAtl2s1042:16231..20033 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1042-processed-gene-0.17
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000281 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000281EMLSAT00000000281-696128Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1042:16231..20033+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000281-683047 ID=EMLSAG00000000281-683047|Name=EMLSAG00000000281|organism=Lepeophtheirus salmonis|type=gene|length=3803bp|location=Sequence derived from alignment at LSalAtl2s1042:16231..20033+ (Lepeophtheirus salmonis)
ATGAAGGGGTAAAAAAGTTAATGATTTTCTGAAGACTGAGTTCAATCATT
ATTATTATCGTTATTATTTATTAGATATGTAGTAGTGTTAGAACTGAGCC
TAAGTTGGAATTTTTCATCTCCACGCCGAGTCGTGTTCGCGTTAGGACTA
CATATCAATTGTCACTTTTTACACCAAAAATACAATTTCCTTCTAATAAA
GAATTTCAATAGAAGGAAGATTGAAGTTGTAAACTAAACAAACATTTTTT
TCCCACAATATTTTAATTTCAGTCTCTGAAGTCTTTTAAATAAGGATTAA
TTTATCCTAAAAATTATTTCGAGTTATTGAGAGTTTCCACATATTATGTA
ATGTGGGTTCTGCTTCTAAATAACATCAAATCTTATTTTAATAACAACGT
TTGTGCATAATTTTTTACTTTCATTTTGACTGATAATGGAAATTTGATTA
ACTCGAGTATTACGAATTTTAATTATTTGTTTTCTACTAAATTTGAATGT
TCCTAAAATATAATGCGGGAGATTTCAAGATATTTTTAGAAAACTGTCGG
AATTTGTAAGGGCGAGTTTTTGTCTGGGTTTGAATAATACTTGAATCCTA
TACAACAGCATAGTAATAAAGAAAATAAATATCCTTARCAAGAAATAATT
CAGACTAACGTAATCCTTTTTTTTTTTTTTTCCAGATTGTGGTTTTGATG
TGTATAYAAAATATGTTCAGCATGTAGAAGAAACATGTGTAGCCACTGGA
CCCTCATCACGTCGAAAAACTCGAGGTGGTGTCTTTAGTCGCATATTGTC
TGATCGAGACTTAAGTGCTGCCGTACACCCGTGGAAATCTACAACTCAGT
CTCCAAATACAAGTAAGAATAATATATTTTTTTAAATTCATTATTCCTCT
CTAATTAGATTTTGACTACTTGTATACATACAAACTCGTATATAAGTACC
CTCGAATATTATGGAATCCTTGCGACCATTTTTTGATGGTCTCATGTTAT
TTTTTTAGACTGGTTTGGAACAATATTTCGGCCAAGGCTCGGTCTCCAAC
CATGGATCGAAATTTATTTGGGAATACATTGTAGATCTATTTTTTGGCCT
CACCTCTATAGGACAATTTTGGTCCCTTCCCTGTTTTTAGATATGTACAC
GTATTAAACTTCAAATTACGTCATTAACAATTAATTTATGAGACTGGTCT
ACACCAATTTTTAAATGAAATCGTTAGTTTTTTTGTTGTTTTGTTTTTTT
AACTGGTCCGGACCGAACTTTTATAAAATAACTTAATTAATTTGGTCCAA
CAAAAATTATCCCATTTTCAGACCGATCTTGGATTTCCAGCCCGAAGCCC
AACACTTATACTTACCTATCTGATTTTTTTTTTAAAGCCAATAGGCATAC
CTTTACTTATTATAATTCTGACAAAAACAAACATTATAATTTAATATAAT
ACCTATCTTAATTACTTTAAAAACTTAAGAAAAAGTATATACCTATCTTG
TAAAAGTCTTGTTTCTATTATTTATAAGTATTCTTATATATTCTGCGCTT
GTAATCAGCTGCATTTCACGTTAATTAATGACTAAAAAGTCCTTTTCCAT
AAAGATCAAATTAATTATTTATTATGGAACGGGAAAAAAGCCTTTTCAAT
ATTAACGGTTGGGTTGTTTCTTTTCCAGACCTTTAATACTTGCACATGTT
TTTCTATTGATTACTTAGGGCGTGTCTCTCAATATTACATACATATTTAC
AGAAGCTAAAATCATCGAGGAGTTTACTTTTTACATAAAACAATTACTTC
TCGAGTAATAAGTTTTATCCTCTCAATTAGTTAGTCAGAAATTTTCATTC
GGGGTGAAACATACTTTAATGTCAAAATGTGAGGTTTTTATAATTTAAAT
ATTATCAAGCACTTGTTATTGACTTTTAAAAAAAAAGAAGATTGTAACTG
CATTGTATTATAAACATCATTTTTATATTTATAGCCAAGGAAATCATACC
TTCAAGCTCAATATGTAATGATGACTTCCTAGATGATCCTAACTCAACAC
TTCTATCCGTCTCATCTGCCTTATTATTCGATCAAACTGGTAGGAAAATG
CTTACATTTTTTACTTACGGACTATTAATGCAATAAATAAAGGGATATTT
AAAAAAAACAAAAACTATTGCATTTATTCCAATAACATTCATTATTTAAA
CATTTGTACTTATATTTATGCAACCCATTTGAACCATACAAACCAGATAA
AAGTTGTTCAATATATACAAAAATAGAAATATTATTCTGTTTTTGAAATC
ACCGGTTTATGCTGGGTGTGATGCTGAAATCTAAACAATCAAAACTTTAT
TGTGATATATTTTCGAAGCCCCGGAGACATAAACAAAATATATTGGGAAA
CTGGCTGTAACGCTATTTTGTCTCCTCTGATCTTTGATTTAGCCCCCTCT
GGCGTCCACAATGGCCTAAAGACGTCTTCTGAAGTCTTGGTACATCTTTC
TTATGTATTCTTTGACCATATCAGCCCAGTGTTCGTTTACAGTAGGCTTT
ATGGCCATGATATTTCCGTGCCTAAGGGTACATACCCTGAACTCTACAGG
CAAGCAGAAGGGGTAGTCCAAAGGGTTGGCGTCAGGTGAATACGGTGGTC
ATATTTATTTTGTTCAGAAATTGATGTTATTGCTCAACCATCTTTAAGCA
GCTTTTGTTGTGTTGGCAGGAGMGCCATCTGATTGCAGYACCATGTTATC
ATCCGGAAAGTTAGTCCAACCCATGGGAGGAAGTGAGCCTCCATATTTTA
TTTCCAGCATAAAGAAGCGCCTGGATAATCACTTGAGAGTTGTGTTCAGA
CGTAATTTTCTTGATAACTAAAAAAAAAGATAAACAAATAAAATTTCTAC
AGTCTTATGAAATGTTAAACGTGCCTAACTTTTTTATGTCCTTCTCTGAA
AAACACATCAGAACCTCTCAATTTGCCAATAACTTAGTATTCAAATTTCA
GGGTCGCACTCGGTATATAAAAACAATATACATATTTGCGTTAAACTCCT
TCTATTTATCATCGATAAGGCCTATTTATGATAACAAAATGTAACATCTT
TGAGTTTCGCTTTAAAAAGGGTATTAAATTCTTATCAGTTTCTGAAGAAC
GAATAAGTTCGTTGAGAATAGATTCGATATACTCTAATTTGTTATGTTAT
GYATCATTTCACTTKCAGCCAATCCAAAGCTAAGAGCTACGTTGTGAAAT
GTGCCTGTTAAGCTTTAGTAGATTCCTTGTCTACGTAAAATCCTCCACCA
CCCCCCATCCCCTCACCTCCCGCAAGTTGTCACTTGTTATGATATGACAG
ATGACGTTATCTTATCCTTTTCCCTCATTACTCATGGAAGTTTTTCTCTG
CTTTTTCGTAGTATTCACCTTATTAATTCAATTTTAAGGGTACGTTTATG
GAGGTTGCGTAGTTAGTTAAAAGAGTAATATTAAAATATACTCCACAATT
TAGACGACCAAAAAAGTGTTGAGACAAATTAAGAGGATTTTTCCTTATGC
GGTTATATGTAATATGTTGAAATGTTCATTCTTCTTTCAAACGTTGTTTC
TTGATACTCAGAAATGTACATATTATACATCGTTGTTCGGGGAGTCCAAA
TTATTTCTAGATTGTCTTATATATTTGTTTTCTTTTTTAGGGGTCTCACT
CTTACATTAACTAACATCATAAGTCATAATATATACTGTACATAAATAAA
TATATATTTATTTATTTACAGTATATATACTAGAAGTTAAATCTCACTTA
TAA
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