EMLSAG00000000283, EMLSAG00000000283-683049 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000283
Unique NameEMLSAG00000000283-683049
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000283 vs. C. finmarchicus
Match: gi|592772262|gb|GAXK01182306.1| (TSA: Calanus finmarchicus comp5239451_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 7.639e+0
Identity = 13/27 (48.15%), Postives = 19/27 (70.37%), Query Frame = 0 
Query:   49 SSPGKTLSPFGAIKLRNPSSSRWPWNR 75
            SS GK L+ F  +KLR  S+++ PW+R
Sbjct:  151 SSGGKLLAEFSELKLRILSNTQVPWDR 231
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BLAST of EMLSAG00000000283 vs. L. salmonis peptides
Match: EMLSAP00000000283 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1042:39565:43099:1 gene:EMLSAG00000000283 transcript:EMLSAT00000000283 description:"snap_masked-LSalAtl2s1042-processed-gene-0.23")

HSP 1 Score: 311.227 bits (796), Expect = 3.632e-109
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0 
Query:    1 MNPPAAPPPPPRRKSRRSGSVPPNSDILPRTKRFFKLSPSPAPNFNSGSSPGKTLSPFGAIKLRNPSSSRWPWNRLGNTLKEEKTKRISCPDISGASSSDSSSRSSSPMSFRASFSSRFNRYKSPSQSKEPSSVPLSRREQIGKKVGRAQKLQIRKGTAKIEK 163
            MNPPAAPPPPPRRKSRRSGSVPPNSDILPRTKRFFKLSPSPAPNFNSGSSPGKTLSPFGAIKLRNPSSSRWPWNRLGNTLKEEKTKRISCPDISGASSSDSSSRSSSPMSFRASFSSRFNRYKSPSQSKEPSSVPLSRREQIGKKVGRAQKLQIRKGTAKIEK
Sbjct:    1 MNPPAAPPPPPRRKSRRSGSVPPNSDILPRTKRFFKLSPSPAPNFNSGSSPGKTLSPFGAIKLRNPSSSRWPWNRLGNTLKEEKTKRISCPDISGASSSDSSSRSSSPMSFRASFSSRFNRYKSPSQSKEPSSVPLSRREQIGKKVGRAQKLQIRKGTAKIEK 163
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000283 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000283 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592772262|gb|GAXK01182306.1|7.639e+048.15TSA: Calanus finmarchicus comp5239451_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000283 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000002833.632e-109100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1042:3956... [more]
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BLAST of EMLSAG00000000283 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000283 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000283 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000283 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1042supercontigLSalAtl2s1042:39565..43099 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1042-processed-gene-0.23
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000283 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000283EMLSAT00000000283-696130Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1042:39565..43099+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000283-683049 ID=EMLSAG00000000283-683049|Name=EMLSAG00000000283|organism=Lepeophtheirus salmonis|type=gene|length=3535bp|location=Sequence derived from alignment at LSalAtl2s1042:39565..43099+ (Lepeophtheirus salmonis)
ATGAATCCGCCTGCTGCTCCTCCACCTCCGCCACGAAGAAAATCCCGCCG
CTCTGGATCCGTTCCTCCTAATTCCGATATCCTACCACGGACTAAACGCT
TCTTCAAACTCTCTCCCAGCCCTGCGCCCAATTTTAATTCTGGAAGCTCA
CCAGGGAGTAGCAACAACAGCAATAATAACAACMCCAATTCATGTTCCTC
CTCTTTGGCGGATCTCMCTSCCACKGCAGAAACGCTATCCCCTTTTGGAG
CCATTAAACTTCGCAACCCTTCCTCCTCTCGATGGCCATGGAACCGATTG
GGAAACACTTTGAAAGAGGAAAAAACTAAAAGGATATCATGTCCAGATAT
CTCTGGTGCATCATCTTCCGACTCCTCGAGTAGAAGCTCTAGTCCCATGT
CTTTTAGAGCCTCATTCTCCTCACGGTTCAATAGATATAAATCGCCCTCA
CAATCCAAAGAGCCTAGCTCAGTTCCCTTGTCACGGAGGTTAGCAGTGCA
TGCATGATTGCGAGATAAATCCCTTTTTTGTTTGATCATCTTTTCTTTTT
ATGTTCCATTAATTCATTATTAATATTATTACCACCCTCATTAACTCATT
AGTCATTACTATAATATGTTAACATTTTCAACATAACTACATATACATAA
TATGAGTGGATGAACTTGTTTATCTTTCTTATTTCTAAATGTACATATTT
TAACCCCCCATCTCACATCATCCTTTCCCATCATCTTCTTATTTATTGTT
ATTATTATTATTTAGGGAGCAAATTGGTAAAAAAGTGGGTCGTGCCCAAA
AGTTGCAAATTAGAAAAGGAACAGCCAAAATCGGTAAGTTTTTTTTAAAT
TTATATGTTCCCTTTCCAAAAAGAGTCTGAGATTTGGAGCCCTTTACATT
ACAGCAAAGAGTTCATCATGAATTTGATTATGCTAATGATTAGAGTAATT
TTAATAATCAACGAGTTAGGTGTATGAAGCATCGCTTTAATTTGTGTCAA
TTATCCACATTTACAAAATAAAAGGATTTAATCAAGCGCTTTTACGATGA
GTGATCACGTTTTTGACAGAAACACTCATATTGGATACATCTTCTTTGAA
GTGTATACATATTACATGTATGTGTTTACGTGTATTTTACTCACTCTAAC
AACCATCCAAGGAGGGGAAAAGAGGAGTAAAAAATTATTATTTTACTGTT
AAAATTGATGTTATAATTGCATAATCGCAACATATATTTTTGTCCTTCTG
TTACTTATAAAATTCAGTCGAGTAGGTTTAGTGATTTATATATACACCAA
TTTTGCGCAGAAATAAGGAACATGACTTTGATATTTCAGACTAATAGAGC
AAGAAGTATTAATGCCCCCTGTTCTTTCTTAAGCCTACTTCCTTTGTTTG
TCCGTGTGTTCTTAGCTCAGCTATATTATGGTATTTACAATTAATGTTGA
TAAAGTATGCATATTTATAGACATATACATATAGGTCTAGGTATTCGGGT
TACGCTCTTTCTTTCTTTTGTTTCGTTTTTACTGATTAAATATGATATTA
AGAAAGCAAAGCATTTTGATAATTATATTACCTACTTCATCATCATCCTC
CCATATCCGATAATATAGTTTGTAGTTCAAAAAAATTMGTCCATACATTT
TTTTATCTTTTCAACTCGTCGATTAAGTTTTAAAGCGTACCTATTGATAT
ATTATCACTTATTTGTTATGATTGGTTTTTATACAAGTCAATTTTTATTT
TCTTTGGAAAATATATAAAGAGTAATCCGGATAACCAATAGTGTTGTGTA
GGTTCCAATTTTTTCGATCCAGCATGAATTTTTCGTTAAAATGTTATAGT
GTATTGAGCCAAAGCAGGGATATCAGATGTGTATTAAGAACATTGYACAT
ATCTTGCAATAAATATTCCTGTTTTCATTATAATGGTATAACTATAATTT
ATTCCATTATATATAATTAAAAAAGCAGAATCACCCTCACATTGACACCT
GACATTCTTTAATTAAAAAGTAGGATCGGACTGGGCTGAACTAAATAGAC
TTATGAAAGTGGCGACATTTCGATTATATAATTATGAATCAAAAAACATC
AAATATGCTCACTCATTCAAACCCTTGTTAAAAAAACACTATGGATGGGA
CATTTGTTGAATGCATGAAGAATCTAACTACTATTACAAAAATTACAAAA
TATTATCATTATCAATGACGCTAGACAAAAGATGAACATAGAGGAAGTAG
GCCATTTTAAACCTATCAGAATTCAAGGTGCTATTTTTTATTTCATTTAT
ATGCATGTCGCCTCTTTCCTAAGAGTCTCTAGATCTCAGTCTTAGATAAA
GACAGACACAACACAAGTGGACAATGGTATTTCCTCCGAACATGTCCTCT
TATTCATGATGCCCAGTGTAGTGTGTCCCGGGACTTTTTTATACATTCAT
GAAATGTTAGGTTTTTTTTGTGTGAGACAAATGGTACATGTTTAAAATTA
ATTCTGTAAGAAAGAAAGAAATAAACAACCAAATATAAAAGTATTACTGC
ATTCAATTATGCATTTTCTTCATTCCTAAATTTAGTAATTTTGAATTATT
TACAACACACATTTCGTATTAACACTTGCCAATACATATGTAGGTACATT
CATACTCTTATATGTATGTTATTATAACCTATATACCTGTAAATATGAAA
TCCCGCACTTTTGATCTATCTACTTTAAGTTAACGGAAAACGGTAATTTT
TTAAGAAGAAAAAACTGAACATTTACAAAAAAATGTAACCTCTACTGACC
TCAATAACGGTCTCCATTTGGGTCCTGAACTGAAATTATTGCATTCCAGG
ATGATGGAGTCAATCAGGGACTTCTAGGTGATGTGAAGGCCTTTGTTAGC
CTTTAATCAAGATAGCTCTAAACAAAATAATCCATCGGATTCAGATCGGG
CAAGCTTAATATTTTTGGACACCCAGTTGTAGAAGTGTTCTATTATGTGT
GATAACTCCCCTGTGATCCTTGGTCTCCACCAAGGCCTTTCAGAGCTCAA
CGACCCTTCTACTGTCGATCCCTTATCATTGGTAATATCCAGATCGTTGT
TTACCAAAATAATCATAATAGTGCAACCTGCACTAAAATGTAGTTGGCTT
GAAATCTTCTGCTGTTGACTCCATGGCGGTTTGTTGGCCACTAAATGAAA
CTTTTATATGTACATTTTACCATACAAAAAAAACATTGCGCAATTTTGTC
ATCAAATATACCGGGAAAATCCGGACTGTTACACCCTGTATAATGGATAT
GTAATATATATTGTTGGTCATATATAAACGTATTATAAGAGAGTTTTTTC
ACCTAATCAAGCGATGATTTGTTGATAATTTTTAATAGATTTTTCTCCTT
TTTTTGTTTGCTAGTACTTATTCTTGTCTTTCTTTTTTACTTATACATAT
ATATAAGAGTCAATATTTACGTAATCAAAATACTTACATATATAGATCAT
ATTTGCTTTTTTTTTTACTTTTCTAAGAAAAGTAA
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