EMLSAG00000000294, EMLSAG00000000294-683060 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000294
Unique NameEMLSAG00000000294-683060
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000294 vs. C. finmarchicus
Match: gi|592832041|gb|GAXK01125503.1| (TSA: Calanus finmarchicus comp25393_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 4.661e+0
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 0 
Query:   48 VRHHIVKIGNRVVWSYLAFFRIPG 71
            V+H  VKIG+RV W +L    I G
Sbjct: 3522 VKHL*VKIGSRVAWPWLGLLIITG 3593
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BLAST of EMLSAG00000000294 vs. C. finmarchicus
Match: gi|592751096|gb|GAXK01203317.1| (TSA: Calanus finmarchicus comp9380083_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 7.344e+0
Identity = 17/48 (35.42%), Postives = 24/48 (50.00%), Query Frame = 0 
Query:    3 SVLQAGFYQAEKEVKERECAFSSDVDVDWACARARISSNLVLESCVRH 50
            S LQA   QA K+VK  +CA  +  D  +A A  + S +    +  RH
Sbjct:   98 SSLQAAQEQAAKDVKTCQCAVRTSYDTAFAEATKKASDDAAAFTKGRH 241
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BLAST of EMLSAG00000000294 vs. C. finmarchicus
Match: gi|592778417|gb|GAXK01176151.1| (TSA: Calanus finmarchicus comp2547_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 9.115e+0
Identity = 14/53 (26.42%), Postives = 26/53 (49.06%), Query Frame = 0 
Query:    3 SVLQAG--FYQAEKEVKERECAFSSDVDVDWACARARISSNLVLESCVRHHIV 53
            S+L  G  F+Q + +  +  CAF  D    W  +   +   ++LE C+ H ++
Sbjct:  343 SLLPVGPPFFQEDSQALQLPCAFCQDEPRCW*GSFPHLGKWILLERCLGHQVL 501
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BLAST of EMLSAG00000000294 vs. L. salmonis peptides
Match: EMLSAP00000000294 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1044:19843:20127:-1 gene:EMLSAG00000000294 transcript:EMLSAT00000000294 description:"maker-LSalAtl2s1044-snap-gene-0.47")

HSP 1 Score: 164.851 bits (416), Expect = 3.824e-54
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 
Query:    1 MASVLQAGFYQAEKEVKERECAFSSDVDVDWACARARISSNLVLESCVRHHIVKIGNRVVWSYLAFFRIPGSLIPETNL 79
            MASVLQAGFYQAEKEVKERECAFSSDVDVDWACARARISSNLVLESCVRHHIVKIGNRVVWSYLAFFRIPGSLIPETNL
Sbjct:    1 MASVLQAGFYQAEKEVKERECAFSSDVDVDWACARARISSNLVLESCVRHHIVKIGNRVVWSYLAFFRIPGSLIPETNL 79
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000294 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000294 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592832041|gb|GAXK01125503.1|4.661e+050.00TSA: Calanus finmarchicus comp25393_c1_seq1 transc... [more]
gi|592751096|gb|GAXK01203317.1|7.344e+035.42TSA: Calanus finmarchicus comp9380083_c0_seq1 tran... [more]
gi|592778417|gb|GAXK01176151.1|9.115e+026.42TSA: Calanus finmarchicus comp2547_c2_seq1 transcr... [more]
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BLAST of EMLSAG00000000294 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000002943.824e-54100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1044:1984... [more]
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BLAST of EMLSAG00000000294 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000294 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000294 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000294 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1044supercontigLSalAtl2s1044:19843..20127 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1044-snap-gene-0.47
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000294 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000294EMLSAT00000000294-696141Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1044:19843..20127-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000294-683060 ID=EMLSAG00000000294-683060|Name=EMLSAG00000000294|organism=Lepeophtheirus salmonis|type=gene|length=285bp|location=Sequence derived from alignment at LSalAtl2s1044:19843..20127- (Lepeophtheirus salmonis)
ATGGCGTCTGTTTTACAGGCCGGTTTCTATCAAGCTGAGAAGGAGGTGAA
GGAAAGAGAGTGCGCGTTTAGTAGTGATGTCGATGTGGAGTGAGTCTGCT
GCTGCTGGCTATAAAATATATATAATACTTAGAGTTGGGCGTGCGCTAGA
GCTCGGATTTCTTCTAACTTGGTATTAGAGTCTTGCGTGAGACATCACAT
TGTCAAGATAGGAAATCGTGTCGTGTGGAGTTATCTCGCCTTTTTTCGCA
TTCCCGGCTCTCTCATTCCAGAAACAAATCTCTAA
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