EMLSAG00000000296, EMLSAG00000000296-683062 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000296
Unique NameEMLSAG00000000296-683062
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000296 vs. C. finmarchicus
Match: gi|592835343|gb|GAXK01122201.1| (TSA: Calanus finmarchicus comp106621_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.408e+0
Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:   16 EGNDLAQTGKQSFRSPENPFVIILISRGF 44
            EG  ++ T KQS + PE+ F+ +L S G 
Sbjct: 2565 EGRMVSVTAKQSEQDPEDVFLYVLTSNGL 2651
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BLAST of EMLSAG00000000296 vs. C. finmarchicus
Match: gi|592835344|gb|GAXK01122200.1| (TSA: Calanus finmarchicus comp106621_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.413e+0
Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:   16 EGNDLAQTGKQSFRSPENPFVIILISRGF 44
            EG  ++ T KQS + PE+ F+ +L S G 
Sbjct: 2686 EGRMVSVTAKQSEQDPEDVFLYVLTSNGL 2772
[Close]
BLAST of EMLSAG00000000296 vs. L. salmonis peptides
Match: EMLSAP00000000296 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1044:21880:22228:-1 gene:EMLSAG00000000296 transcript:EMLSAT00000000296 description:"snap_masked-LSalAtl2s1044-processed-gene-0.21")

HSP 1 Score: 148.673 bits (374), Expect = 6.498e-48
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 
Query:    1 MPGIKAQKRFSISPREGNDLAQTGKQSFRSPENPFVIILISRGFNFFNSTCRKTFEPSVSRLLAIRRPNVRRNT 74
            MPGIKAQKRFSISPREGNDLAQTGKQSFRSPENPFVIILISRGFNFFNSTCRKTFEPSVSRLLAIRRPNVRRNT
Sbjct:    1 MPGIKAQKRFSISPREGNDLAQTGKQSFRSPENPFVIILISRGFNFFNSTCRKTFEPSVSRLLAIRRPNVRRNT 74
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000296 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000296 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592835343|gb|GAXK01122201.1|4.408e+041.38TSA: Calanus finmarchicus comp106621_c0_seq2 trans... [more]
gi|592835344|gb|GAXK01122200.1|4.413e+041.38TSA: Calanus finmarchicus comp106621_c0_seq1 trans... [more]
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BLAST of EMLSAG00000000296 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000002966.498e-48100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1044:2188... [more]
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BLAST of EMLSAG00000000296 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000296 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000296 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000296 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1044supercontigLSalAtl2s1044:21880..22228 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1044-processed-gene-0.21
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000296 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000296EMLSAT00000000296-696143Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1044:21880..22228-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000296-683062 ID=EMLSAG00000000296-683062|Name=EMLSAG00000000296|organism=Lepeophtheirus salmonis|type=gene|length=349bp|location=Sequence derived from alignment at LSalAtl2s1044:21880..22228- (Lepeophtheirus salmonis)
ATGCCAGGGATTAAAGCACAAAAGCGTTTCTCTGTATTTTCCTCGAGAGA
GAGAACATCGATCTGATGATAGGAGACATAACTCACCCTCAACATGATGA
AAACGAAATGTTTTGTAGAGCAAGTGCTGAACATATTCCTTTAATTGTCG
AACACAGATTTCTCCACGAGAAGGAAATGATTTGGCACAAACCGGGAAAC
AGTCTTTTCGATCACCCGAGAATCCCTTTGTCATAATTTTGATTTCACGG
GGATTTAACTTTTTTAATAGTACATGTAGAAAGACTTTTGAGCCCTCCGT
ATCTCGTTTATTGGCAATTCGACGCCCCAATGTACGAAGAAACACATAG
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