EMLSAG00000000299, EMLSAG00000000299-683065 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000299 vs. GO
Match: - (symbol:POLR3F "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 CTD:10621 KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780 GeneTree:ENSGT00390000009679 EMBL:AAEX03013766 RefSeq:XP_857138.2 Ensembl:ENSCAFT00000008718 GeneID:477143 KEGG:cfa:477143 NextBio:20852675 Uniprot:E2RG78) HSP 1 Score: 326.635 bits (836), Expect = 6.460e-109 Identity = 163/309 (52.75%), Postives = 217/309 (70.23%), Query Frame = 0 Query: 12 PAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE---------NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 P EV +RI+ L + GI+D+ +Q+ +P I RA AIN LLS G++ L +S+ G+L ++K++Q N +KG D +EK+V+ II+++GNKG W RDIR KSNL T +NK+LK+LE+KKLIKA+KSV A+KKKVYMLY+L PD SVTGGAWYS+QDFE+EFVE+LNQQCF++L TK E +++ P+ +++S ASS ++ KYI ELGISK+ L + DIE IL+TLIYDGK+E V S D K YRA ++PPTGLVR PCG+CPV DC + G I+P C YM EW E Sbjct: 15 PVEVENRIIELCH-QFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQ-----NAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPIIPPTGLVRAPCGLCPVFDDCHEG-GEISPSNCIYMTEWLEF 316
BLAST of EMLSAG00000000299 vs. GO
Match: - (symbol:Polr3f "polymerase (RNA) III (DNA directed) polypeptide F" species:10090 "Mus musculus" [GO:0001056 "RNA polymerase III activity" evidence=IBA] [GO:0002376 "immune system process" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex" evidence=ISO;IBA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0032728 "positive regulation of interferon-beta production" evidence=ISO] [GO:0045087 "innate immune response" evidence=IEA] [GO:0045089 "positive regulation of innate immune response" evidence=ISO] [GO:0051607 "defense response to virus" evidence=IEA] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 MGI:MGI:1924086 GO:GO:0005634 GO:GO:0045087 GO:GO:0003677 GO:GO:0006351 GO:GO:0051607 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728 CTD:10621 eggNOG:COG5111 HOGENOM:HOG000231688 HOVERGEN:HBG006817 KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780 GeneTree:ENSGT00390000009679 OrthoDB:EOG7FV3R3 OMA:MVQRNSS TreeFam:TF103051 EMBL:AK036166 EMBL:AK076538 EMBL:AK144679 EMBL:BC009159 RefSeq:NP_084039.2 UniGene:Mm.389351 PDB:2DK8 PDBsum:2DK8 ProteinModelPortal:Q921X6 SMR:Q921X6 BioGrid:214030 PhosphoSite:Q921X6 PRIDE:Q921X6 Ensembl:ENSMUST00000028914 GeneID:70408 KEGG:mmu:70408 UCSC:uc008mrg.1 InParanoid:Q921X6 EvolutionaryTrace:Q921X6 NextBio:331553 PRO:PR:Q921X6 ArrayExpress:Q921X6 Bgee:Q921X6 CleanEx:MM_POLR3F Genevestigator:Q921X6 Uniprot:Q921X6) HSP 1 Score: 326.25 bits (835), Expect = 9.548e-109 Identity = 162/309 (52.43%), Postives = 218/309 (70.55%), Query Frame = 0 Query: 12 PAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE---------NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 P E+ +RI+ L + GI+D+ +Q+ +P I RA AIN LLS G++ L +S+ G+L ++K++Q N +KG D +EK+V+ II+++GNKG W RDIR KSNL T +NK+LK+LE+KKLIKA+KSV A+KKKVYMLY+L PD SVTGGAWYS+QDFE+EFVE+LNQQCF++L +K E +++ PV +++S ASS ++ KYI ELGISK+ L + DIE IL+TLIYDGK+E V S D K YRA +LPPTG+VR PCG+CPV +DC + G I+P C YM EW E Sbjct: 15 PVEIENRIIELCH-QFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQ-----NAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPILPPTGVVRAPCGLCPVFEDCHEG-GEISPSNCIYMTEWLEF 316
BLAST of EMLSAG00000000299 vs. GO
Match: - (symbol:POLR3F "DNA-directed RNA polymerase III subunit RPC6" species:9913 "Bos taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IBA] [GO:0006383 "transcription from RNA polymerase III promoter" evidence=IBA] [GO:0032728 "positive regulation of interferon-beta production" evidence=IEA] [GO:0045089 "positive regulation of innate immune response" evidence=IEA] [GO:0001056 "RNA polymerase III activity" evidence=IBA] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728 InterPro:IPR016049 PANTHER:PTHR12780 GeneTree:ENSGT00390000009679 OrthoDB:EOG7FV3R3 OMA:MVQRNSS TreeFam:TF103051 EMBL:DAAA02035728 EMBL:DAAA02035725 EMBL:DAAA02035726 EMBL:DAAA02035727 Ensembl:ENSBTAT00000011619 Uniprot:F1MYX7) HSP 1 Score: 325.865 bits (834), Expect = 1.148e-108 Identity = 162/309 (52.43%), Postives = 217/309 (70.23%), Query Frame = 0 Query: 12 PAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE---------NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 P E+ +RI+ L + GI+D+ +Q+ +P I RA AIN LLS G++ L +S+ G+L ++K++Q N +KG D +EK+V+ II+++GNKG W RDIR KSNL T +NK+LK+LE+KKLIKA+KSV A+KKKVYMLY+L PD SVTGGAWYS+QDFE+EFVE+LNQQCF++L TK E +++ P+ +++S ASS ++ KYI ELGISK+ L + DIE IL+TLIYDGK+E V S D K YRA ++PPTGLVR PCG+CPV DC + G I+P C YM EW E Sbjct: 15 PVEIENRIIELCH-QFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQ-----NAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVSPIIPPTGLVRAPCGLCPVFDDCHEG-GEISPSNCIYMTEWLEF 316
BLAST of EMLSAG00000000299 vs. GO
Match: - (symbol:POLR3F "DNA-directed RNA polymerase III subunit RPC6" species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity" evidence=NAS] [GO:0005515 "protein binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IDA;NAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006359 "regulation of transcription from RNA polymerase III promoter" evidence=NAS] [GO:0006383 "transcription from RNA polymerase III promoter" evidence=TAS] [GO:0006385 "transcription elongation from RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase III transcription" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS] [GO:0032481 "positive regulation of type I interferon production" evidence=TAS] [GO:0032728 "positive regulation of interferon-beta production" evidence=IMP] [GO:0045087 "innate immune response" evidence=TAS] [GO:0045089 "positive regulation of innate immune response" evidence=IMP] [GO:0051607 "defense response to virus" evidence=IEA] [GO:0001056 "RNA polymerase III activity" evidence=IBA] Reactome:REACT_71 InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 EMBL:U93869 GO:GO:0005829 Reactome:REACT_6900 GO:GO:0045087 GO:GO:0003677 GO:GO:0051607 EMBL:CH471133 GO:GO:0045089 Reactome:REACT_1788 GO:GO:0006359 GO:GO:0005666 GO:GO:0003899 GO:GO:0032728 EMBL:AL121893 GO:GO:0006386 GO:GO:0006385 CTD:10621 eggNOG:COG5111 HOGENOM:HOG000231688 HOVERGEN:HBG006817 KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780 OrthoDB:EOG7FV3R3 OMA:MVQRNSS EMBL:AK290892 EMBL:BC012588 RefSeq:NP_001269455.1 RefSeq:NP_006457.2 UniGene:Hs.472227 PDB:2DK5 PDB:2YU3 PDBsum:2DK5 PDBsum:2YU3 ProteinModelPortal:Q9H1D9 SMR:Q9H1D9 BioGrid:115866 DIP:DIP-34646N IntAct:Q9H1D9 MINT:MINT-1377146 STRING:9606.ENSP00000366828 BindingDB:Q9H1D9 PhosphoSite:Q9H1D9 DMDM:20139728 PaxDb:Q9H1D9 PRIDE:Q9H1D9 DNASU:10621 Ensembl:ENST00000377603 GeneID:10621 KEGG:hsa:10621 UCSC:uc002wqv.3 GeneCards:GC20P018459 HGNC:HGNC:15763 HPA:HPA049441 HPA:HPA050173 neXtProt:NX_Q9H1D9 PharmGKB:PA33520 InParanoid:Q9H1D9 PhylomeDB:Q9H1D9 TreeFam:TF103051 EvolutionaryTrace:Q9H1D9 GeneWiki:POLR3F GenomeRNAi:10621 NextBio:40356 PRO:PR:Q9H1D9 ArrayExpress:Q9H1D9 Bgee:Q9H1D9 CleanEx:HS_POLR3F Genevestigator:Q9H1D9 Uniprot:Q9H1D9) HSP 1 Score: 324.324 bits (830), Expect = 3.915e-108 Identity = 161/309 (52.10%), Postives = 217/309 (70.23%), Query Frame = 0 Query: 12 PAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE---------NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 P E+ +RI+ L + GI+D+ +Q+ +P I RA AIN LLS G++ L +S+ G+L ++K++Q N +KG D +EK+V+ II+++GNKG W RDIR KSNL T +NK+LK+LE+KKLIKA+KSV A+KKKVYMLY+L PD SVTGGAWYS+QDFE+EFVE+LNQQCF++L +K E +++ P+ +++S ASS ++ KYI ELGISK+ L + DIE IL+TLIYDGK+E V S D K YRA ++PPTGLVR PCG+CPV DC + G I+P C YM EW E Sbjct: 15 PVEIENRIIELCH-QFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQ-----NAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPIIPPTGLVRAPCGLCPVFDDCHEG-GEISPSNCIYMTEWLEF 316
BLAST of EMLSAG00000000299 vs. GO
Match: - (symbol:POLR3F "DNA-directed RNA polymerase III subunit RPC6" species:9913 "Bos taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0032728 "positive regulation of interferon-beta production" evidence=ISS] [GO:0045087 "innate immune response" evidence=IEA] [GO:0045089 "positive regulation of innate immune response" evidence=ISS] [GO:0051607 "defense response to virus" evidence=IEA] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0005634 GO:GO:0045087 GO:GO:0003677 GO:GO:0006351 GO:GO:0051607 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728 EMBL:BC111292 RefSeq:NP_001033237.1 UniGene:Bt.27185 ProteinModelPortal:Q2T9S3 SMR:Q2T9S3 STRING:9913.ENSBTAP00000011619 PRIDE:Q2T9S3 GeneID:529410 KEGG:bta:529410 CTD:10621 eggNOG:COG5111 HOGENOM:HOG000231688 HOVERGEN:HBG006817 InParanoid:Q2T9S3 KO:K03025 NextBio:20875029 InterPro:IPR016049 PANTHER:PTHR12780 Uniprot:Q2T9S3) HSP 1 Score: 323.939 bits (829), Expect = 6.380e-108 Identity = 161/309 (52.10%), Postives = 216/309 (69.90%), Query Frame = 0 Query: 12 PAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE---------NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 P E+ +RI+ L + GI+D+ +Q+ +P I RA AIN LLS G++ L +S+ G+L ++K++Q N +KG D +EK+V+ II+++GNKG W RDIR KSNL T +NK+LK+LE+KKLIKA+KSV A+KKKVYMLY+L PD SVTGGAWYS+QDFE+EFVE+LNQQCF++L K E +++ P+ +++S ASS ++ KYI ELGISK+ L + DIE IL+TLIYDGK+E V S D K YRA ++PPTGLVR PCG+CPV DC + G I+P C YM EW E Sbjct: 15 PVEIENRIIELCH-QFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQ-----NAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVSPIIPPTGLVRAPCGLCPVFDDCHEG-GEISPSNCIYMTEWLEF 316
BLAST of EMLSAG00000000299 vs. GO
Match: - (symbol:POLR3F "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IBA] [GO:0006383 "transcription from RNA polymerase III promoter" evidence=IBA] [GO:0032728 "positive regulation of interferon-beta production" evidence=IEA] [GO:0045089 "positive regulation of innate immune response" evidence=IEA] [GO:0001056 "RNA polymerase III activity" evidence=IBA] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728 CTD:10621 KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780 GeneTree:ENSGT00390000009679 OrthoDB:EOG7FV3R3 OMA:MVQRNSS TreeFam:TF103051 EMBL:AADN03003706 RefSeq:NP_001186330.1 UniGene:Gga.5581 Ensembl:ENSGALT00000014238 GeneID:416723 KEGG:gga:416723 NextBio:20820145 PRO:PR:E1BU41 Uniprot:E1BU41) HSP 1 Score: 323.553 bits (828), Expect = 8.187e-108 Identity = 163/316 (51.58%), Postives = 220/316 (69.62%), Query Frame = 0 Query: 5 VKTEKMTPAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE---------NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 VK E P ++ RI+ L + GI+D+ +Q+ +P + RA AIN LLS G++ L +S+ G+L ++KE+Q N + +KG D +EK+V+ II+++GNKG W RDIR KSNL T +NK+LK+LE+KKLIKA+KSV A+KKKVYMLY+L PD SVTGGAWYS+QDFE+EFVE+LNQQCF++L +K E +++ P+ +++S ASS ++ KYI ELGISK+ L + DIE IL+TLIYDGK+E V S D + K YRA L+ PTGLVR PCG+CPV DC + G I+P C YM EW E Sbjct: 6 VKPEVPDPVDIESRIIELCH-QFPHGITDQVIQNDMPHMEAQQRAMAINRLLSMGQLDLLRSNAGLLYRIKESQ-----NASKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGQMKLYRAVSPLIQPTGLVRTPCGLCPVFDDCHEG-GEISPSNCIYMTEWLEF 314
BLAST of EMLSAG00000000299 vs. GO
Match: - (symbol:POLR3F "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IBA] [GO:0006383 "transcription from RNA polymerase III promoter" evidence=IBA] [GO:0032728 "positive regulation of interferon-beta production" evidence=IEA] [GO:0045089 "positive regulation of innate immune response" evidence=IEA] [GO:0001056 "RNA polymerase III activity" evidence=IBA] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728 KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780 GeneTree:ENSGT00390000009679 OrthoDB:EOG7FV3R3 OMA:MVQRNSS TreeFam:TF103051 EMBL:AAEX03013766 GeneID:477143 RefSeq:XP_005634798.1 Ensembl:ENSCAFT00000043193 Uniprot:J9P638) HSP 1 Score: 323.939 bits (829), Expect = 9.328e-108 Identity = 162/311 (52.09%), Postives = 219/311 (70.42%), Query Frame = 0 Query: 12 PAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASN--QASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE---------NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 P EV +RI+ L + GI+D+ +Q+ +P I RA AIN LLS G++ L +S+ G+L ++K++Q+ + + +KG D +EK+V+ II+++GNKG W RDIR KSNL T +NK+LK+LE+KKLIKA+KSV A+KKKVYMLY+L PD SVTGGAWYS+QDFE+EFVE+LNQQCF++L TK E +++ P+ +++S ASS ++ KYI ELGISK+ L + DIE IL+TLIYDGK+E V S D K YRA ++PPTGLVR PCG+CPV DC + G I+P C YM EW E Sbjct: 15 PVEVENRIIELCH-QFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQNAGPVSFFLSKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPIIPPTGLVRAPCGLCPVFDDCHEG-GEISPSNCIYMTEWLEF 323
BLAST of EMLSAG00000000299 vs. GO
Match: - (symbol:POLR3F "Uncharacterized protein" species:9823 "Sus scrofa" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IBA] [GO:0006383 "transcription from RNA polymerase III promoter" evidence=IBA] [GO:0032728 "positive regulation of interferon-beta production" evidence=IEA] [GO:0045089 "positive regulation of innate immune response" evidence=IEA] [GO:0001056 "RNA polymerase III activity" evidence=IBA] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728 CTD:10621 KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780 GeneTree:ENSGT00390000009679 OrthoDB:EOG7FV3R3 OMA:MVQRNSS TreeFam:TF103051 EMBL:CU914246 RefSeq:XP_003483946.1 Ensembl:ENSSSCT00000007767 GeneID:100738796 KEGG:ssc:100738796 Uniprot:F1SBH4) HSP 1 Score: 323.553 bits (828), Expect = 9.636e-108 Identity = 162/309 (52.43%), Postives = 216/309 (69.90%), Query Frame = 0 Query: 12 PAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE---------NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 P E+ +RI+ L + GI+D+ +Q+ +P I RA AIN LLS G++ L +S+ G+L ++K++Q N +KG D +EK+V+ II+++GNKG W RDIR KSNL T +NK+LK+LE+KKLIKA+KSV A+KKKVYMLY+L PD SVTGGAWYS+QDFE+EFVE+LNQQCF++L TK E +++ PV +++S ASS ++ KYI ELGISK+ L + DIE IL+TLIYDGK+E V S D K YRA ++ PTGLVR PCG+CPV DC + G I+P C YM EW E Sbjct: 15 PVEIENRIIELCH-QFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQ-----NAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPIISPTGLVRAPCGLCPVFDDCHEG-GEISPSNCIYMTEWLEF 316
BLAST of EMLSAG00000000299 vs. GO
Match: - (symbol:Polr3f "polymerase (RNA) III (DNA directed) polypeptide F" species:10116 "Rattus norvegicus" [GO:0001056 "RNA polymerase III activity" evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IBA] [GO:0006383 "transcription from RNA polymerase III promoter" evidence=IBA] [GO:0032728 "positive regulation of interferon-beta production" evidence=ISO] [GO:0045089 "positive regulation of innate immune response" evidence=ISO] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 RGD:1306428 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 EMBL:CH474026 CTD:10621 KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780 GeneTree:ENSGT00390000009679 OrthoDB:EOG7FV3R3 OMA:MVQRNSS TreeFam:TF103051 EMBL:AABR06026695 RefSeq:NP_001101254.1 UniGene:Rn.22329 Ensembl:ENSRNOT00000010468 GeneID:311487 KEGG:rno:311487 UCSC:RGD:1306428 NextBio:663707 Uniprot:D3ZQ56) HSP 1 Score: 325.479 bits (833), Expect = 1.027e-107 Identity = 163/316 (51.58%), Postives = 219/316 (69.30%), Query Frame = 0 Query: 5 VKTEKMTPAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE---------NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 V+ P E+ +RI+ L + GI+D+ +Q+ +P I RA AIN LLS G++ L +S+ G+L ++K++Q N +KG D +EK+V+ II+++GNKG W RDIR KSNL T +NK+LK+LE+KKLIKA+KSV A+KKKVYMLY+L PD SVTGGAWYS+QDFE+EFVE+LNQQCF++L +K E +++ PV +++S ASS ++ KYI ELGISK+ L + DIE IL+TLIYDGK++ V S D K YRA +LPPTGLVR PCG+CPV DC + G I+P C YM EW E Sbjct: 63 VQPPDADPVEIENRIIELCH-QFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQ-----NAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVDMTIIAAKEGTVGSVDGHMKLYRAVNPILPPTGLVRAPCGLCPVFDDCHEG-GEISPSNCIYMTEWLEF 371
BLAST of EMLSAG00000000299 vs. GO
Match: - (symbol:polr3f "polymerase (RNA) III (DNA directed) polypeptide F" species:7955 "Danio rerio" [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0060041 "retina development in camera-type eye" evidence=IMP] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 ZFIN:ZDB-GENE-040426-972 GO:GO:0003677 GO:GO:0006351 GO:GO:0060041 GO:GO:0003899 CTD:10621 HOVERGEN:HBG006817 KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780 EMBL:BC051782 RefSeq:NP_957481.1 UniGene:Dr.24983 ProteinModelPortal:Q7ZTZ0 SMR:Q7ZTZ0 GeneID:394162 KEGG:dre:394162 InParanoid:Q7ZTZ0 NextBio:20815110 Uniprot:Q7ZTZ0) HSP 1 Score: 313.923 bits (803), Expect = 5.081e-104 Identity = 157/316 (49.68%), Postives = 218/316 (68.99%), Query Frame = 0 Query: 5 VKTEKMTPAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE---------NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 VK E P ++ +RI L + + GI+D+ +Q+ +P + RA AIN LLS G++ L ++S G+L ++K+ Q + + VKG D +EK+V+ II+++GNKG W RDIR KSNL T +NK+LK+LE+KKLIKA+KSV A+KKKVYMLY+L PD SVTGGAWYS+QDFE+EFVE LNQQCF++L +K E ++D P+ +++S A+S ++ KYI ELGISK+ L + DIE IL+TLI+DGK+E V S D + K YR ++ PTGLV+ PCG+CPV DC + G I+P C YM EW + Sbjct: 6 VKKESTDPVDIENRIKELCQ-QFPHGITDQVIQNDMPHVEAQQRATAINRLLSVGQLDLLRNSSGLLYRLKDTQ-----SASKVKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEALNQQCFKFLQSKAETARDSKQSPMVQRNSSFATSHEVWKYICELGISKVDLSMEDIETILNTLIFDGKVEMTIIAAKEGTVGSVDGQMKLYRGVNPIIQPTGLVKTPCGLCPVFDDCHEG-GEISPSNCVYMAEWLDF 314
BLAST of EMLSAG00000000299 vs. C. finmarchicus
Match: gi|592941265|gb|GAXK01017288.1| (TSA: Calanus finmarchicus comp73087_c0_seq1 transcribed RNA sequence) HSP 1 Score: 317.39 bits (812), Expect = 1.767e-105 Identity = 156/282 (55.32%), Postives = 207/282 (73.40%), Query Frame = 0 Query: 29 EGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQG-ILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVASEDSKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFE 309 +G+ DK L + +P + RA+AIN LL K+ L++ S G +L ++K + ++A+ GD EEKIVF II+ +GN G+WIRDIR KSNL QT L KVLKSLE K+LIKA+KSVNA KKKVYMLY+LDPD SVTGGAWYS+QDFE+EFVEILNQQC+R+LY KLE+S+ +GP+A K++S S+ D+ K+I++LGISK++LK DIE IL+T+++DGK E +S YRA E LLP GL R PCG+CPVI+ C + G+I P+ C Y ++W E Sbjct: 38 QGVGDKVLIANMPYVDPKVRAQAINKLLVGEKIDLYKGSDGGLLYRLK------SPSKAATISGDQEEKIVFRIIENAGNLGSWIRDIRGKSNLGQTQLTKVLKSLEAKRLIKAVKSVNANKKKVYMLYNLDPDHSVTGGAWYSDQDFESEFVEILNQQCYRFLYHKLEQSQASSAGPIAAKNSSMVSTKDVAKFITDLGISKVALKTEDIEAILNTIVFDGKAERCEGGESGSLYRAVEPLLPSAGLARSPCGVCPVIRRCGEK-GNIRPETCDYFRDWLE 862
BLAST of EMLSAG00000000299 vs. C. finmarchicus
Match: gi|592954453|gb|GAXK01004100.1| (TSA: Calanus finmarchicus comp255931_c0_seq3 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 1.229e+0 Identity = 19/59 (32.20%), Postives = 31/59 (52.54%), Query Frame = 0 Query: 252 ENVASEDSKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINP-KKCTYMKEWFE 309 E++ E+ K+ R ES PPTG R+P I P K ++ +++P +KC E + Sbjct: 187 EDIGIEEEKRRGRRQESQQPPTGRQRMPSRIAP--KTERRREPTVSPSRKCHQSGERMQ 357
BLAST of EMLSAG00000000299 vs. C. finmarchicus
Match: gi|592769963|gb|GAXK01184605.1| (TSA: Calanus finmarchicus comp134279_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 2.791e+0 Identity = 38/137 (27.74%), Postives = 60/137 (43.80%), Query Frame = 0 Query: 130 LKSLETKKLIKAIKSVNATKKKVYM-LYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKH---ASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVASEDSKKY 262 L E +L KA+++ N VY+ L D+ + +W N+D E IL + C RYLYT EK ++ VA H SC + L S G++ N ++++ Y ++E E+S Y Sbjct: 448 LSGTERAQLEKALETEN-----VYLELLDV-----IKTSSWVGNKDVEPVMKTILTRLCARYLYT--EKRRNNALNSVANFHLRNGSCLWRINWLADPSPRGMT------NSCGLMVNYRYYLDRLE----ENSNNY 792
BLAST of EMLSAG00000000299 vs. C. finmarchicus
Match: gi|592814832|gb|GAXK01139736.1| (TSA: Calanus finmarchicus comp529527_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 3.269e+0 Identity = 18/60 (30.00%), Postives = 35/60 (58.33%), Query Frame = 0 Query: 99 FSIIQESGNKGTWIRDIRLKSNLIQT------TLNKVLKSLETKKLIKAIKSVNATKKKV 152 FSI+Q N+ W+R+I + NL++ T +LK++ T+KL+ ++ N + ++V Sbjct: 138 FSILQ*Y*NRT*WVRNIEAQQNLLEVY*DY*ITSKHILKTVGTQKLLLIMRKRNLSGRQV 317
BLAST of EMLSAG00000000299 vs. C. finmarchicus
Match: gi|592833964|gb|GAXK01123580.1| (TSA: Calanus finmarchicus comp5083597_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 6.061e+0 Identity = 17/47 (36.17%), Postives = 24/47 (51.06%), Query Frame = 0 Query: 235 LNDIEMILDTL-IYDGKIENVASEDSKKYYRATESLLPPTGLVRVPC 280 LND++ + +L D EN A K+YRA +LLPP + C Sbjct: 228 LNDVKNLQASLKCKDFDFENHAVSSRSKFYRAKNNLLPPAKEIVEKC 368
BLAST of EMLSAG00000000299 vs. C. finmarchicus
Match: gi|592878250|gb|GAXK01079651.1| (TSA: Calanus finmarchicus comp5960256_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 6.201e+0 Identity = 17/37 (45.95%), Postives = 23/37 (62.16%), Query Frame = 0 Query: 210 HASCASSDDLLKYISELGISKISLKLNDIEMILDTLI 246 H S S D L+ ELGI+ +SL +ND I++TLI Sbjct: 110 HISFPSKDILVNMTMELGITNLSLAMND---IIETLI 211
BLAST of EMLSAG00000000299 vs. L. salmonis peptides
Match: EMLSAP00000000299 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1044:32287:33278:-1 gene:EMLSAG00000000299 transcript:EMLSAT00000000299 description:"maker-LSalAtl2s1044-augustus-gene-0.35") HSP 1 Score: 626.32 bits (1614), Expect = 0.000e+0 Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0 Query: 1 MDSSVKTEKMTPAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVASEDSKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 MDSSVKTEKMTPAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVASEDSKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI Sbjct: 1 MDSSVKTEKMTPAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVASEDSKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310
BLAST of EMLSAG00000000299 vs. SwissProt
Match: gi|20139517|sp|Q921X6.1|RPC6_MOUSE (RecName: Full=DNA-directed RNA polymerase III subunit RPC6; Short=RNA polymerase III subunit C6; AltName: Full=DNA-directed RNA polymerase III subunit F) HSP 1 Score: 326.25 bits (835), Expect = 1.674e-110 Identity = 162/309 (52.43%), Postives = 218/309 (70.55%), Query Frame = 0 Query: 12 PAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE---------NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 P E+ +RI+ L + GI+D+ +Q+ +P I RA AIN LLS G++ L +S+ G+L ++K++Q N +KG D +EK+V+ II+++GNKG W RDIR KSNL T +NK+LK+LE+KKLIKA+KSV A+KKKVYMLY+L PD SVTGGAWYS+QDFE+EFVE+LNQQCF++L +K E +++ PV +++S ASS ++ KYI ELGISK+ L + DIE IL+TLIYDGK+E V S D K YRA +LPPTG+VR PCG+CPV +DC + G I+P C YM EW E Sbjct: 15 PVEIENRIIELCH-QFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQ-----NAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPILPPTGVVRAPCGLCPVFEDCHEG-GEISPSNCIYMTEWLEF 316
BLAST of EMLSAG00000000299 vs. SwissProt
Match: gi|20139728|sp|Q9H1D9.1|RPC6_HUMAN (RecName: Full=DNA-directed RNA polymerase III subunit RPC6; Short=RNA polymerase III subunit C6; AltName: Full=DNA-directed RNA polymerase III subunit F; AltName: Full=RNA polymerase III 39 kDa subunit; Short=RPC39) HSP 1 Score: 324.324 bits (830), Expect = 6.912e-110 Identity = 161/309 (52.10%), Postives = 217/309 (70.23%), Query Frame = 0 Query: 12 PAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE---------NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 P E+ +RI+ L + GI+D+ +Q+ +P I RA AIN LLS G++ L +S+ G+L ++K++Q N +KG D +EK+V+ II+++GNKG W RDIR KSNL T +NK+LK+LE+KKLIKA+KSV A+KKKVYMLY+L PD SVTGGAWYS+QDFE+EFVE+LNQQCF++L +K E +++ P+ +++S ASS ++ KYI ELGISK+ L + DIE IL+TLIYDGK+E V S D K YRA ++PPTGLVR PCG+CPV DC + G I+P C YM EW E Sbjct: 15 PVEIENRIIELCH-QFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQ-----NAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPIIPPTGLVRAPCGLCPVFDDCHEG-GEISPSNCIYMTEWLEF 316
BLAST of EMLSAG00000000299 vs. SwissProt
Match: gi|110816413|sp|Q2T9S3.1|RPC6_BOVIN (RecName: Full=DNA-directed RNA polymerase III subunit RPC6; Short=RNA polymerase III subunit C6; AltName: Full=DNA-directed RNA polymerase III subunit F) HSP 1 Score: 323.939 bits (829), Expect = 1.129e-109 Identity = 161/309 (52.10%), Postives = 216/309 (69.90%), Query Frame = 0 Query: 12 PAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE---------NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 P E+ +RI+ L + GI+D+ +Q+ +P I RA AIN LLS G++ L +S+ G+L ++K++Q N +KG D +EK+V+ II+++GNKG W RDIR KSNL T +NK+LK+LE+KKLIKA+KSV A+KKKVYMLY+L PD SVTGGAWYS+QDFE+EFVE+LNQQCF++L K E +++ P+ +++S ASS ++ KYI ELGISK+ L + DIE IL+TLIYDGK+E V S D K YRA ++PPTGLVR PCG+CPV DC + G I+P C YM EW E Sbjct: 15 PVEIENRIIELCH-QFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQ-----NAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVSPIIPPTGLVRAPCGLCPVFDDCHEG-GEISPSNCIYMTEWLEF 316
BLAST of EMLSAG00000000299 vs. SwissProt
Match: gi|20139853|sp|Q9VD25.1|RPC6_DROME (RecName: Full=Probable DNA-directed RNA polymerase III subunit RPC6; Short=DNA-directed RNA polymerase III subunit F; Short=RNA polymerase III subunit C6) HSP 1 Score: 294.278 bits (752), Expect = 2.850e-98 Identity = 137/280 (48.93%), Postives = 196/280 (70.00%), Query Frame = 0 Query: 30 GISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVASEDSKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFE 309 G ++ L +P++P R +A+N LL G +++ + + ++ + K+ + A K D EEK+V+ I++E GNKG WIRDIR+KSNL LNK+LK+LETKKLIKA+KSVNA+KKKVYMLY+L+PD+S+TGGAWY +QDFE EFV++LNQQC R+L K + ++ GP+A K SC + +++ K+IS+LGISK++L D+E IL T++YDG E V +D YRA + LPPTGLV++PCGICPVIK+C + G + C YM++W + Sbjct: 19 GATNDDLTKALPDVPAATRVEALNILLQEGGIEILKKGEKLVYRAKDPE----KKSALPKDADNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKILKNLETKKLIKAVKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKREGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQDGSFVYRAVNAPLPPTGLVQMPCGICPVIKNC-SNCGDVTAITCEYMRDWLD 293
BLAST of EMLSAG00000000299 vs. SwissProt
Match: gi|20139429|sp|P91529.1|RPC6_CAEEL (RecName: Full=Probable DNA-directed RNA polymerase III subunit RPC6; Short=RNA polymerase III subunit C6; AltName: Full=DNA-directed RNA polymerase III subunit F) HSP 1 Score: 190.274 bits (482), Expect = 1.466e-57 Identity = 114/308 (37.01%), Postives = 177/308 (57.47%), Query Frame = 0 Query: 3 SSVKTEKMTPAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGIL-IKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKD-CPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVASEDSKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWF 308 +S+K E ++ AE +++ + ++ EGI AL S+ P +P R AIN LLSS K+ + Q+ G+L +KV N + G EE++++S+I+ES +G WI+++R S L Q L K LKSLETKKLIK IK+V T +K Y+L+ ++PD+S+TGG +YS+Q ++E + L C Y ++ + + D P+ + AS ++ ++I+E + + L L D+E IL+ + DG IE A D K S + P LV VPC ICPV++DC+ I+P+ C YMK W Sbjct: 2 ASIKEELISAAESESQVMQIVQA-ALEGIDMDALTSMTPGLPQTVRQTAINSLLSSKKLAIQQAPGGVLRLKV---------NTSEQIAGTEEEQVIYSLIEESKTRGIWIKELREGSGLNQLQLRKTLKSLETKKLIKTIKAVGTT-RKCYILFSIEPDMSLTGGTFYSDQQLDSELINTLISVCGSYAASRRKHAIDENPNNIQMQREASYIRPQEIAQFITEKRVLNVPLSLEDLERILEVAVLDGTIERRA--DGKIRACPPRSSISP--LVSVPCAICPVVEDCRPGY-VISPQSCDYMKNWL 293
BLAST of EMLSAG00000000299 vs. SwissProt
Match: gi|9297041|sp|O94553.1|RPC6_SCHPO (RecName: Full=Probable DNA-directed RNA polymerase III subunit rpc6; Short=RNA polymerase III subunit C6; AltName: Full=DNA-directed RNA polymerase III 34 kDa polypeptide; AltName: Full=RNA polymerase III subunit C34) HSP 1 Score: 152.525 bits (384), Expect = 6.353e-43 Identity = 86/266 (32.33%), Postives = 150/266 (56.39%), Query Frame = 0 Query: 46 GDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGP--VAG-KHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVASEDSKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWF 308 D + A+N LLS + + QG ++ + + + A ++++G +E+IV+S I+ SGN+G W + + L++NL + +++ LKSLE+K L+K+IKSV +K+YMLYDL P +TGG W+++Q+ + EF+E L + +RY+++K K GP V G ++ ++ + ++ I+K+ L L ++ ++D LIYDGK+E + S + R + PCG CPV C + +NP C Y+ +W Sbjct: 43 NDLSSALNILLSRRLLDPLR--QGNVLVYRAVRLDEAKTVSTMEG---DEQIVYSFIKNSGNEGIWRKTLTLRTNLHVSVVDRCLKSLESKNLVKSIKSVKNPTRKIYMLYDLVPSTELTGGPWFTDQELDVEFIENLKKVIYRYVHSKSFPPKKAAMGPDLVWGPEYNGYPTALQIHNWLRSTNITKVDLSLANVISLVDVLIYDGKVEKRSDGASYRAIRVNNENI--DAFTESPCGNCPVSDICDAN-SRVNPITCEYLDKWL 300
BLAST of EMLSAG00000000299 vs. SwissProt
Match: gi|74861297|sp|Q86JM3.1|RPC6_DICDI (RecName: Full=DNA-directed RNA polymerase III subunit rpc6; Short=RNA polymerase III subunit C6; AltName: Full=DNA-directed RNA polymerase III subunit F) HSP 1 Score: 145.591 bits (366), Expect = 1.844e-40 Identity = 82/269 (30.48%), Postives = 146/269 (54.28%), Query Frame = 0 Query: 49 AKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVA--------SEDSKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFE 309 K IN+L+ G++ L Q+S + ++ +QA +G E+ +++ +I+ S N G W R+++ S Q + K+LK+LE++KLIK++KS+ + +KKVYMLY+++P +TGG YS+Q ++ ++++I+ ++ K G V A L+ ++E S+ SL DI+ +++T+IYDG IE + S Y+ T++ +P +PCG CPV C + G ++PK+C Y K++ E Sbjct: 37 VKVINNLIKQGRLMLIQNSD----ETTSYKEVNPEDQAKFRGLGVEDFLIYQLIEASSNTGAWTRELKNSSGYQQVQITKILKTLESRKLIKSVKSIQSGRKKVYMLYNMEPSREITGGQLYSDQSYDHQYIQIMKMHIKTFVDNK---------GAV-----DLADIITYLRKVAEEATSQ-SLGPEDIQALVNTVIYDGDIEEMRDTRMGAMLGRRSGILYKPTKTPIPVNNFCNMPCGNCPVFDICSDN-GLVSPKRCVYFKQYLE 285
BLAST of EMLSAG00000000299 vs. SwissProt
Match: gi|417698|sp|P32910.1|RPC6_YEAST (RecName: Full=DNA-directed RNA polymerase III subunit RPC6; Short=RNA polymerase III subunit C6; AltName: Full=C34; AltName: Full=DNA-directed RNA polymerase III 36 kDa polypeptide) HSP 1 Score: 108.227 bits (269), Expect = 3.985e-26 Identity = 69/232 (29.74%), Postives = 130/232 (56.03%), Query Frame = 0 Query: 47 DRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLY--TKLEKSKDCPSGP-----VAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVASEDSKKYYRAT-ESLL 270 D + +LL ++L + Q +K + ++ A +A++ AEE +V+S I+ SG +G W + I+ ++NL Q + K LKSLE+++ +K++KSV +K+YMLY L P V +TGG W+++ + + EF+ L +R++ T K+ +GP A + +++ ++L++I+ ++ + L ++I + + L+YD K+E V + YR T ES+L Sbjct: 47 DLMSIVQELLDKNLIKLVK--QNDELKFQGVLESEAQKKATM---SAEEALVYSYIEASGREGIWSKTIKARTNLHQHVVLKCLKSLESQRYVKSVKSVKFPTRKIYMLYSLQPSVDITGGPWFTDGELDIEFINSLLTIVWRFISENTFPNGFKNFENGPKKNVFYAPNVKNYSTTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKVTHD----CYRVTLESIL 269
BLAST of EMLSAG00000000299 vs. Select Arthropod Genomes
Match: XP_624984.1 (PREDICTED: probable DNA-directed RNA polymerase III subunit RPC6 [Apis mellifera]) HSP 1 Score: 318.546 bits (815), Expect = 5.268e-108 Identity = 155/295 (52.54%), Postives = 208/295 (70.51%), Query Frame = 0 Query: 15 VRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVASEDSKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFE 309 + +I+AL +++ +GISDK L +P++ RA+ IN LLS G LF+ +L ++K+ S KG D EEKIV++II+E+GNKG WIRDIR KSNL+ T LNK+LKSLETKK IKA+KSV A+KKKVYMLY+L+PD SVTGGAWY +QDFE EFV++LNQQC+R+L K E+ C GP+ ++ + ASS ++ K+IS+LGISK+ L + D+EMIL+TL+YDGK+E S D YRA E LL P GL++ CG+CPV K+C +G + P KC Y+ EW E Sbjct: 24 IEQKIIALAQARP-KGISDKDLTIEMPDLQPAQRAQIINKLLSQGHFDLFKQGGSLLYRLKDP-----SKAKIAKGADNEEKIVYTIIEEAGNKGIWIRDIRFKSNLMPTQLNKILKSLETKKFIKAVKSVAASKKKVYMLYNLEPDTSVTGGAWYQDQDFEAEFVDVLNQQCYRFLEKKKEQMNSCGGGPIMARNVTFASSKEVWKFISDLGISKVKLSVEDLEMILNTLVYDGKVERTLSGDGNTLYRAVEPLLNPPGLIKSTCGVCPVRKNC-CDVGDVTPTKCQYITEWLE 311
BLAST of EMLSAG00000000299 vs. Select Arthropod Genomes
Match: EEB19012.1 (DNA-directed RNA polymerase III subunit F, putative [Pediculus humanus corporis]) HSP 1 Score: 306.99 bits (785), Expect = 2.517e-103 Identity = 155/308 (50.32%), Postives = 208/308 (67.53%), Query Frame = 0 Query: 2 DSSVKTEKMTPAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVASEDSKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFE 309 D VK + + +L + K K +G SD +QS P + DR +N LLS+G + LF ++ K K+ + SVKG D EEK+V+SI++ +GNKG WIRDIR +SNL+ T LNK+LK+LE KKLIKA+KSV+A+KKKVYMLY+L+PD S+TGGAWYS+QDFE EFV +L+QQC+R+L K EK KD P K+ S ASS ++ K+ISELGIS++ L + DIE ILDT++YDGK+E D K YRA E LLP G+V+ PCG+CPV + C +GS+ PKKC Y++ W + Sbjct: 14 DIKVKEQSEVSEDAVSEVLNIIK-KYPKGASDHEIQSEAPSLIPEDRVAILNKLLSTGHIDLFNQGGKLIYKFKDV-----AKGDSVKGADNEEKVVYSIVEAAGNKGIWIRDIRYQSNLLPTQLNKILKALENKKLIKAVKSVSASKKKVYMLYNLEPDKSLTGGAWYSDQDFEAEFVGVLSQQCYRFLQQKQEKLKDFNGSPRQWKNMSYASSKEVWKFISELGISRVMLSVEDIETILDTIVYDGKVEKAVDVDLTKIYRAVEPLLPAPGIVQTPCGVCPVYQFC-GDVGSVTPKKCEYLRNWLD 314
BLAST of EMLSAG00000000299 vs. Select Arthropod Genomes
Match: AFH06555.1 (CG5380, isoform B [Drosophila melanogaster]) HSP 1 Score: 294.278 bits (752), Expect = 1.381e-98 Identity = 137/280 (48.93%), Postives = 196/280 (70.00%), Query Frame = 0 Query: 30 GISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVASEDSKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFE 309 G ++ L +P++P R +A+N LL G +++ + + ++ + K+ + A K D EEK+V+ I++E GNKG WIRDIR+KSNL LNK+LK+LETKKLIKA+KSVNA+KKKVYMLY+L+PD+S+TGGAWY +QDFE EFV++LNQQC R+L K + ++ GP+A K SC + +++ K+IS+LGISK++L D+E IL T++YDG E V +D YRA + LPPTGLV++PCGICPVIK+C + G + C YM++W + Sbjct: 19 GATNDDLTKALPDVPAATRVEALNILLQEGGIEILKKGEKLVYRAKDPE----KKSALPKDADNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKILKNLETKKLIKAVKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKREGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQDGSFVYRAVNAPLPPTGLVQMPCGICPVIKNC-SNCGDVTAITCEYMRDWLD 293
BLAST of EMLSAG00000000299 vs. Select Arthropod Genomes
Match: AAF55978.1 (CG5380, isoform A [Drosophila melanogaster]) HSP 1 Score: 294.278 bits (752), Expect = 1.381e-98 Identity = 137/280 (48.93%), Postives = 196/280 (70.00%), Query Frame = 0 Query: 30 GISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVASEDSKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFE 309 G ++ L +P++P R +A+N LL G +++ + + ++ + K+ + A K D EEK+V+ I++E GNKG WIRDIR+KSNL LNK+LK+LETKKLIKA+KSVNA+KKKVYMLY+L+PD+S+TGGAWY +QDFE EFV++LNQQC R+L K + ++ GP+A K SC + +++ K+IS+LGISK++L D+E IL T++YDG E V +D YRA + LPPTGLV++PCGICPVIK+C + G + C YM++W + Sbjct: 19 GATNDDLTKALPDVPAATRVEALNILLQEGGIEILKKGEKLVYRAKDPE----KKSALPKDADNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKILKNLETKKLIKAVKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKREGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQDGSFVYRAVNAPLPPTGLVQMPCGICPVIKNC-SNCGDVTAITCEYMRDWLD 293
BLAST of EMLSAG00000000299 vs. Select Arthropod Genomes
Match: gb|EFA07655.1| (putative DNA-directed RNA polymerase III subunit RPC6-like Protein [Tribolium castaneum]) HSP 1 Score: 293.893 bits (751), Expect = 2.095e-98 Identity = 147/293 (50.17%), Postives = 201/293 (68.60%), Query Frame = 0 Query: 17 DRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVASEDSKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFE 309 DR+L L K+K EGIS++ ++ +P +P + A IN L +G ++LF++ +L K K++ S + +++G D EEK+VF II+E+GNKG WIRDIR KSNL T LNKVLKSLETKK+IKA+KSV+A+KKKVYMLYDL+ D SVTGGAWY +QDFE+EFV++L+QQC RYL K E + GP+ ++ S A++ D+ K+ISELGISKISL ++DIE IL T++ D E + + + YRA + G+V CG+CP+ C + G INPK C Y EW E Sbjct: 16 DRLLELAKAKP-EGISNENIKQAIPNLPLEELALIINKCLKNGSLELFKTKDKLLYKYKDS-----SKKPAIRGADNEEKVVFKIIEEAGNKGIWIRDIRFKSNLNMTQLNKVLKSLETKKIIKAVKSVSASKKKVYMLYDLEADSSVTGGAWYQDQDFESEFVDVLSQQCCRYLRQKWEDANSMGGGPLLARNRSYATAQDVHKFISELGISKISLSVDDIESILYTVVLDNNAERIVATNGSFLYRAVNKFMQTPGIVTTTCGVCPIASRCADT-GFINPKVCNYFTEWLE 301
BLAST of EMLSAG00000000299 vs. Select Arthropod Genomes
Match: EAA00356.3 (AGAP011973-PA [Anopheles gambiae str. PEST]) HSP 1 Score: 286.96 bits (733), Expect = 9.137e-96 Identity = 144/297 (48.48%), Postives = 203/297 (68.35%), Query Frame = 0 Query: 13 AEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVASEDSKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFE 309 A++ +I+AL K K EGI++ L + +P R +A+N LL +++ + ++ ++K+ ++ K D EE+++++I++E GNKG WIRDIR+KSNL+ T LNKVLK LE KKLIKA+KSVNA+KKKVYMLY+L+PD S+TGGAWY +QDFE EFV++LNQQC R+L K E +K GP+A + S S D+ ++IS+LGISKISL +D+E IL T++YDGK E VA YRA E+ + GLV++PCGICPV+K+C G I P+ CTY+ EW + Sbjct: 5 AQIGFQIIALAKDK-PEGINNDDLAESLQSVPPEQRVQALNKLLQEAVLEILKKGNTLIYRLKDP----GKKSSAPKDIDNEERVIYNIVEEGGNKGIWIRDIRVKSNLVMTQLNKVLKQLENKKLIKAVKSVNASKKKVYMLYNLEPDRSITGGAWYQDQDFEAEFVDVLNQQCLRFLRQKREVAKGSGEGPLAVQKLSECSVADVHRFISDLGISKISLDEDDLETILKTVVYDGKAERVAQISGGFLYRAIETPIAAPGLVQMPCGICPVVKNC-ADCGEITPQLCTYISEWLD 295
BLAST of EMLSAG00000000299 vs. Select Arthropod Genomes
Match: gb|KFM77602.1| (DNA-directed RNA polymerase III subunit RPC6, partial [Stegodyphus mimosarum]) HSP 1 Score: 278.485 bits (711), Expect = 2.615e-92 Identity = 144/304 (47.37%), Postives = 199/304 (65.46%), Query Frame = 0 Query: 15 VRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVASED--------SKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 V D IL L N GI++K LQ+ +P A+N L ++ K+Q+ ++ K+K+ + +G D E+K+++ II+++GNKG WIRD+R +SNL QT +NK+LKSLE KKLIK++KSV A KKKVYMLY+++PD SVTGG WYS+Q+FE+EFV++LNQQCFRYL T+ + D S PV+ ++AS SS D+ YI+ L +SK+ L L DIE ILDTLIYDGK+E E + YR + L+ GL+RVPCG+CPV +C++ G I+P C YMKEW E Sbjct: 8 VEDSILELLNKHPN-GITNKVLQNAMPSTGPAQLVDALNKLTAADKIQILNKGSQLMYKLKDQESARI-----CRGADLEDKLIYQIIEKAGNKGIWIRDLRFESNLPQTQVNKILKSLENKKLIKSVKSVAAAKKKVYMLYNIEPDRSVTGGTWYSDQEFESEFVDVLNQQCFRYL-TQAKIVADKLSDPVSQRNASYKSSKDVCNYINGLKVSKVQLSLQDIETILDTLIYDGKVEKSVVEHGSTSNDSGGENLYRVIKPLVHSCGLMRVPCGVCPVHSECQEG-GVISPSTCPYMKEWLEF 303
BLAST of EMLSAG00000000299 vs. Select Arthropod Genomes
Match: EFX74838.1 (hypothetical protein DAPPUDRAFT_56706 [Daphnia pulex]) HSP 1 Score: 239.195 bits (609), Expect = 1.119e-76 Identity = 135/312 (43.27%), Postives = 194/312 (62.18%), Query Frame = 0 Query: 13 AEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQS-----------SQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSK-DCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE--NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFE 309 E+ RIL L + K +GI+DK L++ +P + R INDLL+ K++LFQ+ Q + IK+KE D EE +V II+E+GNKG +DIR +S L TT+NK+LK+LE K LIK++ S++ K KVYML+DL PD SVTGG+WY++ +FE+E V+I+NQQC+R L K E +K GP+ ++AS SS ++ + IS++ I K +L + +IE IL+TL+YDGKIE V+ D + K YR E+LL +VR+PCG+CPVIK C + G + PK C Y +W + Sbjct: 27 TEIEARILELLR-KYPKGINDKILETHMPNLDIQIRVDVINDLLTKKKMKLFQAPGTNELFWGLNEQPVSIKLKEV--------------DKEENVVMRIIEEAGNKGILNKDIRDQSGLNLTTINKILKALEGKNLIKSVLSISVAKIKVYMLFDLQPDRSVTGGSWYTDGEFESELVDIVNQQCYRMLQQKAEAAKLKAMDGPLIVRNASFLSSKEICQMISDMNIVKFNLTVEEIEAILETLVYDGKIEMRMVSDGDERIKTYRIVETLLSSAAIVRIPCGVCPVIKICGTA-GEVQPKNCVYYDQWLD 322
BLAST of EMLSAG00000000299 vs. Select Arthropod Genomes
Match: EFX74835.1 (hypothetical protein DAPPUDRAFT_199715 [Daphnia pulex]) HSP 1 Score: 237.654 bits (605), Expect = 4.991e-76 Identity = 134/312 (42.95%), Postives = 193/312 (61.86%), Query Frame = 0 Query: 13 AEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQS-----------SQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSK-DCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE--NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFE 309 E+ RIL L + K +GI+DK L++ +P + R INDLL+ K++LFQ+ Q + IK+KE D EE +V II+E+GNKG +DIR +S L TT+NK+LK+LE K LIK++ S++ K KVYML+DL PD SVTGG+WY++ +FE+E V+I+NQQC+R L K E +K GP+ ++AS SS ++ + IS++ I K +L + +IE IL+TL+YDGKIE V+ D + K YR E+LL +VR+PCG+CPVI C + G + PK C Y +W + Sbjct: 27 TEIEARILELLR-KYPKGINDKILETHMPNLDIQIRVDVINDLLTKKKMKLFQAPGTNELFWGLNEQPVSIKLKEV--------------DKEENVVMRIIEEAGNKGILNKDIRDQSGLNLTTINKILKALEGKNLIKSVLSISVAKIKVYMLFDLQPDRSVTGGSWYTDGEFESELVDIVNQQCYRMLQQKAEAAKLKAMDGPLIVRNASFLSSKEICQMISDMNIVKFNLTVEEIEAILETLVYDGKIEMRMVSDGDERIKTYRIVETLLSSAAIVRIPCGVCPVIVKCGTA-GEVQPKNCVYYDQWLD 322
BLAST of EMLSAG00000000299 vs. Select Arthropod Genomes
Match: EFX62917.1 (hypothetical protein DAPPUDRAFT_130662 [Daphnia pulex]) HSP 1 Score: 217.624 bits (553), Expect = 1.474e-68 Identity = 133/310 (42.90%), Postives = 190/310 (61.29%), Query Frame = 0 Query: 4 SVKTEKMTPAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQS--SQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKD-CPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVASEDSKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGS-INPKKCTYMKEWFE 309 S K ++ T AE+ R+L L + + +GI+ K L++ +P + + +N LLS KV +FQ+ ++ + +K+ + +KG D+EEKIV II+E+GNKG W RDIR KS+L QTTLNK+LK+LE KKLIK++ SV+A KKKVYML++L PD SVTGG+WYS+ +FE+E V+ILNQQC+R L K E +K GP +++S SS ++ + IS++ I K +L + DIE ILDTLIYDGKIE + P V C C + +SL S + PK C Y +W + Sbjct: 21 SAKHDEQTEAEIEARMLELLR-EFPKGINYKILETDMPNVDKIIKVNTLNRLLSQEKVNMFQAPGTKELFWCLKQQP------ASKLKGVDSEEKIVMRIIEEAGNKGIWNRDIRTKSSLNQTTLNKILKALEGKKLIKSVSSVSAAKKKVYMLFNLQPDRSVTGGSWYSDNEFESELVDILNQQCYRILQQKSEAAKQKSMDGPFVVRNSSFLSSKEICQIISDMKIVKFNLTVEDIETILDTLIYDGKIE-----------------MSP-----VLCWNC---SNPLRSLSSAVQPKNCVYYDQWLD 298
BLAST of EMLSAG00000000299 vs. nr
Match: gi|646716247|gb|KDR19576.1| (DNA-directed RNA polymerase III subunit RPC6 [Zootermopsis nevadensis]) HSP 1 Score: 357.451 bits (916), Expect = 1.506e-120 Identity = 174/292 (59.59%), Postives = 218/292 (74.66%), Query Frame = 0 Query: 18 RILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVASEDSKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFE 309 RILAL K G +GISDK +Q+ VP++ RA IN LL+ G LF +L K+K+ S VKG D EEKIV+SII+E+GNKG WIRDIR KSNLI T LNK+LK LE KKLIKA+KSV+A+KKKVYMLY+L+PD +VTGGAWY +QDFE EFV++LNQQC+R+L+ KLE ++DC GP+A ++ S ASS D+ KYISELGISK+ L + D+E ILDTL+YDGK+E + D YRA ESLLP G+VR+PCG+CPV++ C +GS+NPKKC YMKEW E Sbjct: 26 RILALAKGSG-KGISDKDIQNEVPDLRPDQRASIINKLLAQGYFDLFNQGGTLLYKLKDP-----SRIQKVKGADNEEKIVYSIIEEAGNKGIWIRDIRFKSNLIPTQLNKILKILENKKLIKAVKSVSASKKKVYMLYNLEPDRTVTGGAWYCDQDFEAEFVDVLNQQCYRFLHQKLEATRDCKGGPIAARNISYASSKDVWKYISELGISKVQLSVEDMETILDTLLYDGKVERCVTTDGSHLYRAVESLLPAPGIVRIPCGVCPVLRHC-SDVGSVNPKKCVYMKEWLE 310
BLAST of EMLSAG00000000299 vs. nr
Match: gi|998499585|ref|XP_015509690.1| (PREDICTED: probable DNA-directed RNA polymerase III subunit RPC6 [Neodiprion lecontei]) HSP 1 Score: 335.495 bits (859), Expect = 6.194e-112 Identity = 162/299 (54.18%), Postives = 219/299 (73.24%), Query Frame = 0 Query: 11 TPAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVASEDSKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFE 309 +P + ++I++L ++K +GISDK + + +P++ +A AIN LL+ G LF+ +L ++K+ S SVKG D EEK+V++II+E+GNKG WIRDIR KSNL+ T LNK+LKSLETKK IKA+KSV A+KKKVYMLY+L+PD SVTGGAWY +QDFE EFV+ILNQQC+R+L K + +K+C GP+ ++ + ASS ++ K+IS+LGISK+ L + D+EMIL+TLIYDGK+E S D YRA E LL P GL+R PCG+CPV K+C +G I PKKC Y+KEW E Sbjct: 22 SPEFIEEKIISLAQAKP-KGISDKDISAEIPDLAPARKAAAINKLLAQGYFDLFKQGGTLLYRLKDP-----SKAKSVKGADNEEKVVYNIIEEAGNKGIWIRDIRFKSNLMPTQLNKILKSLETKKFIKAVKSVAASKKKVYMLYNLEPDRSVTGGAWYQDQDFEAEFVDILNQQCYRFLEQKKDSTKNCKDGPIGARNIAFASSKEVWKFISDLGISKVKLSVEDLEMILNTLIYDGKVERTLSSDGSNLYRAVEPLLSPPGLIRTPCGVCPVRKNC-CDVGEITPKKCHYIKEWLE 313
BLAST of EMLSAG00000000299 vs. nr
Match: gi|817086822|ref|XP_012266158.1| (PREDICTED: probable DNA-directed RNA polymerase III subunit RPC6 [Athalia rosae]) HSP 1 Score: 329.331 bits (843), Expect = 1.530e-109 Identity = 163/307 (53.09%), Postives = 219/307 (71.34%), Query Frame = 0 Query: 3 SSVKTEKMTPAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIENVASEDSKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFE 309 SS+++E P +I+ L ++K +GISDK + + +P + +A IN LL+ G LF+ +L ++K+ + SVKG D EEK+V++II+E+GNKG WIRDIR KSNL+ T LNK+LKSLETKK IKA+KSV A+KKKVYMLY+L+PD SVTGGAWY +QDFE EFV++LNQQCFR+L + E +K+C GP+A ++ + ASS ++ K+IS+LGISK+ L + D+EMIL+TLIYDGK+E S D YRA E LL P GL+ PCG+CPV K+C +G I PKKC Y+KEW E Sbjct: 14 SSIESE--VPDITEQKIILLAQAKP-KGISDKDITAEIPGLEPAQKAATINKLLTQGYFDLFKQGGTLLYRLKDP-----NKTKSVKGADNEEKVVYNIIEEAGNKGIWIRDIRFKSNLMPTQLNKILKSLETKKFIKAVKSVAASKKKVYMLYNLEPDRSVTGGAWYQDQDFEAEFVDVLNQQCFRFLEQRNETTKNCRGGPIAARNIAFASSKEVWKFISDLGISKVKLSIEDLEMILNTLIYDGKVERTLSSDGNNLYRAVEPLLSPPGLISTPCGVCPVRKNC-CDIGDITPKKCQYIKEWLE 311
BLAST of EMLSAG00000000299 vs. nr
Match: gi|507661910|ref|XP_004635654.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Octodon degus]) HSP 1 Score: 328.946 bits (842), Expect = 2.771e-109 Identity = 164/316 (51.90%), Postives = 220/316 (69.62%), Query Frame = 0 Query: 5 VKTEKMTPAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE---------NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 V+T P E+ +RI+ L + GI+D+ +Q+ +P I RA AIN LLS G++ L +SS G+L ++K++Q N +KG D +EK+V+ II+++GNKG W RDIR KSNL T +NK+LK+LE+KKLIKA+KSV A+KKKVYMLY+L PD SVTGGAWYS+QDFE+EFVE+LNQQCF++L +K E +++ P+ +++S ASS ++ KYI ELGISK+ L + DIE IL+TLIYDGK+E V S D K YRA ++PPTGLVR PCG+CPV DC + G I+P C YM EW E Sbjct: 8 VQTPDAVPVEIENRIIELCH-QFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSSTGLLYRIKDSQ-----NAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVSPIIPPTGLVRAPCGLCPVFDDCHEG-GEISPSNCIYMTEWLEF 316
BLAST of EMLSAG00000000299 vs. nr
Match: gi|1016687542|ref|XP_016067467.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform X1 [Miniopterus natalensis]) HSP 1 Score: 328.946 bits (842), Expect = 3.193e-109 Identity = 164/309 (53.07%), Postives = 218/309 (70.55%), Query Frame = 0 Query: 12 PAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE---------NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 P EV RI+ L + GI+D+ +Q+ +P I RA AIN LLS G++ L +S+ G+L ++K++Q N +KG D +EK+V+ II+++GNKG W RDIR KSNL T +NK+LK+LE+KKLIKA+KSV A+KKKVYMLY+L PD SVTGGAWYS+QDFE+EFVE+LNQQCF++L TK E +++ PV +++S ASS ++ KYI ELGISK+ L + DIE IL+TLIYDGK+E V S D + K YRA ++PPTGLVR PCG+CPV DC++ G I+P C YM EW E Sbjct: 15 PVEVESRIIELCH-QFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQ-----NAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGRMKLYRAVNPIIPPTGLVRAPCGLCPVFDDCREG-GEISPSNCVYMTEWLEF 316
BLAST of EMLSAG00000000299 vs. nr
Match: gi|589943664|ref|XP_006984532.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Peromyscus maniculatus bairdii]) HSP 1 Score: 328.561 bits (841), Expect = 4.886e-109 Identity = 164/309 (53.07%), Postives = 217/309 (70.23%), Query Frame = 0 Query: 12 PAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE---------NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 P E+ +RI+ L + GI+D+ +Q+ +P I RA AIN LLS G++ L +S+ G+L ++K++Q N +KG D +EK+V+ II+++GNKG W RDIR KSNL T +NK+LK+LE+KKLIKA+KSV A+KKKVYMLY+L PD SVTGGAWYS+QDFE+EFVE+LNQQCF++L TK E ++D P+ +++S ASS ++ KYI ELGISK+ L + DIE IL+TLIYDGK+E V S D K YRA +LPPTGLVR PCG+CPV DC + G I+P C YM EW E Sbjct: 15 PVEIENRIIELCH-QFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQ-----NAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARDSKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPILPPTGLVRAPCGLCPVFDDCHEG-GEISPSNCIYMTEWLEF 316
BLAST of EMLSAG00000000299 vs. nr
Match: gi|524942199|ref|XP_005072632.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform X1 [Mesocricetus auratus]) HSP 1 Score: 328.176 bits (840), Expect = 5.104e-109 Identity = 164/309 (53.07%), Postives = 217/309 (70.23%), Query Frame = 0 Query: 12 PAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE---------NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 P E+ +RI+ L + GI+D+ +Q+ +P I RA AIN LLS G++ L +S+ G+L ++KE+Q N +KG D +EK+V+ II+++GNKG W RDIR KSNL T +NK+LK+LE+KKLIKA+KSV A+KKKVYMLY+L PD SVTGGAWYS+QDFE+EFVE+LNQQCF++L TK E +++ P+ +++S ASS ++ KYI ELGISK+ L + DIE IL+TLIYDGK+E V S D K YRA +LPPTGLVR PCG+CPV DC + G I+P C YM EW E Sbjct: 15 PVEIENRIIELCH-QFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKESQ-----NAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPILPPTGLVRAPCGLCPVFDDCHEG-GEISPSNCIYMTEWLEF 316
BLAST of EMLSAG00000000299 vs. nr
Match: gi|354468114|ref|XP_003496512.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Cricetulus griseus] >gi|625243681|ref|XP_007613082.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Cricetulus griseus]) HSP 1 Score: 328.176 bits (840), Expect = 6.078e-109 Identity = 164/309 (53.07%), Postives = 216/309 (69.90%), Query Frame = 0 Query: 12 PAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE---------NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 P E+ +RI+ L + GI+D+ +Q+ +P I RA AIN LLS G++ L +S+ G+L ++KE Q N +KG D +EK+V+ II+++GNKG W RDIR KSNL T +NK+LK+LE+KKLIKA+KSV A+KKKVYMLY+L PD SVTGGAWYS+QDFE+EFVE+LNQQCF++L TK E +++ P+ +++S ASS ++ KYI ELGISK+ L + DIE IL+TLIYDGK+E V S D K YRA +LPPTGLVR PCG+CPV DC + G I+P C YM EW E Sbjct: 15 PVEIENRIIELCH-QFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKETQ-----NAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPILPPTGLVRAPCGLCPVFDDCHEG-GEISPSNCIYMTEWLEF 316
BLAST of EMLSAG00000000299 vs. nr
Match: gi|1033401528|ref|XP_016848524.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Anolis carolinensis]) HSP 1 Score: 327.405 bits (838), Expect = 8.388e-109 Identity = 161/309 (52.10%), Postives = 218/309 (70.55%), Query Frame = 0 Query: 12 PAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE---------NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 P E+ +RI+ L + GI+D+ +Q+ +P + RA AIN LLS G++ L +SS G+L ++KE+Q N +KG D +EK+V+ II+++GNKG W RDIR KSNL T +NK+LK+LE+KKLIKA+KSV A+KKKVYMLY+L PD SVTGGAWYS+QDFE+EFVE+LNQQCF++L TK E ++D P+ +++S ASS ++ KYISELG+SK+ L + DIE IL+TLIYDGK+E S D + K YRA ++ PTGL+RVPCG+CPV DC + G I+P C YM EW + Sbjct: 9 PLEIENRIIELCH-QFPHGITDQVIQNDMPHMEAQQRAMAINRLLSMGQLDLLRSSSGLLYRIKESQ-----NAGKMKGSDNQEKLVYQIIEDAGNKGIWTRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAEAARDSKQNPMIQRNSSFASSHEVWKYISELGVSKVELSMEDIETILNTLIYDGKVEMTIIAAKEATAGSVDGRMKLYRAVNPIIQPTGLIRVPCGLCPVFDDCHEG-GEISPSNCIYMTEWLQF 310
BLAST of EMLSAG00000000299 vs. nr
Match: gi|918589074|ref|XP_013367684.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform X1 [Chinchilla lanigera]) HSP 1 Score: 327.791 bits (839), Expect = 8.807e-109 Identity = 163/316 (51.58%), Postives = 220/316 (69.62%), Query Frame = 0 Query: 5 VKTEKMTPAEVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIE---------NVASEDSK-KYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWFEI 310 V+T P E+ +RI+ L + GI+D+ +Q+ +P I RA AIN LLS G++ L +S+ G+L ++K++Q N +KG D +EK+V+ II+++GNKG W RDIR KSNL T +NK+LK+LE+KKLIKA+KSV A+KKKVYMLY+L PD SVTGGAWYS+QDFE+EFVE+LNQQCF++L +K E +++ P+ +++S ASS ++ KYI ELGISK+ L + DIE IL+TLIYDGK+E V S D K YRA ++PPTGLVR PCG+CPV DC + G I+P C YM EW E Sbjct: 8 VQTPDAVPVEIENRIIELCH-QFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQ-----NAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVSPIIPPTGLVRAPCGLCPVFDDCHEG-GEISPSNCIYMTEWLEF 316
BLAST of EMLSAG00000000299 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold619_size123246-snap-gene-0.37 (protein:Tk05503 transcript:maker-scaffold619_size123246-snap-gene-0.37-mRNA-1 annotation:"dna-directed rna polymerase iii subunit rpc6") HSP 1 Score: 340.117 bits (871), Expect = 1.677e-117 Identity = 179/298 (60.07%), Postives = 232/298 (77.85%), Query Frame = 0 Query: 14 EVRDRILALTKSKGNEGISDKALQSLVPEIPNGDRAKAINDLLSSGKVQLFQSSQGILIKVKEAQDNXASNQASVKGGDAEEKIVFSIIQESGNKGTWIRDIRLKSNLIQTTLNKVLKSLETKKLIKAIKSVNATKKKVYMLYDLDPDVSVTGGAWYSNQDFETEFVEILNQQCFRYLYTKLEKSKDCPSGPVAGKHASCASSDDLLKYISELGISKISLKLNDIEMILDTLIYDGKIEN---VASEDSKKYYRATESLLPPTGLVRVPCGICPVIKDCKKSLGSINPKKCTYMKEWF 308 E+ +RILAL K GI+DK LQ+ +P++ RA AIN LL++GK+ L QS +G+L K K AS++ GDAEEK+V+ II+E+GNKGTWIRDIR+KSNLIQT LNK LKSL++KKLIK +K VN+T+K VYML++L+PD SVTGGAWYS+QDFE+EFVEILNQQC+RYLY KLEKS++C SGP+ ++ S ASS ++L+YISELGISK+ L++ DIE ILDTLI+DGK+E +A + + +RA ESLLP TGL+R+PCG CPVIK+C +GS+NP KC+YM EW Sbjct: 22 ELAERILALCKEIPT-GINDKLLQTSMPDVDPKSRALAINHLLTTGKIDLLQSEKGLLYKAK-----SASSKVGTIKGDAEEKLVYKIIEEAGNKGTWIRDIRIKSNLIQTQLNKALKSLKSKKLIKDVKCVNSTRKIVYMLFNLEPDSSVTGGAWYSDQDFESEFVEILNQQCYRYLYQKLEKSRECTSGPLVARNISQASSKEVLQYISELGISKVQLRVEDIEAILDTLIFDGKVEKTMALAEGEETRLFRAVESLLPVTGLMRMPCGGCPVIKEC-GDVGSVNPIKCSYMTEWL 312 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000299 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 25
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BLAST of EMLSAG00000000299 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 6
BLAST of EMLSAG00000000299 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000299 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 8
BLAST of EMLSAG00000000299 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 15
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BLAST of EMLSAG00000000299 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 25
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BLAST of EMLSAG00000000299 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1044:32287..33278- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000299-683065 ID=EMLSAG00000000299-683065|Name=EMLSAG00000000299|organism=Lepeophtheirus salmonis|type=gene|length=992bp|location=Sequence derived from alignment at LSalAtl2s1044:32287..33278- (Lepeophtheirus salmonis)back to top Add to Basket
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