EMLSAG00000000331, EMLSAG00000000331-683097 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000331
Unique NameEMLSAG00000000331-683097
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000331 vs. C. finmarchicus
Match: gi|592859905|gb|GAXK01097657.1| (TSA: Calanus finmarchicus comp38631_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 94.3597 bits (233), Expect = 8.318e-22
Identity = 55/103 (53.40%), Postives = 61/103 (59.22%), Query Frame = 0 
Query:    1 MGHSRSETNLVAESTTSSLDLTRTGNFLHPGTLR------------------------------ARANPKCSLVMPTIPALAPIINIPKSGACPVMPNTILHR 73
            MGH+ S T LVAE TTSS   T TG FLHPG LR                              ARA+P+CSLVMPTIPALAP INIPKSGACPV+PNT++ R
Sbjct:  929 MGHNLSLTKLVAERTTSSAVFTITGTFLHPGDLRIFTSSLRVS*RTFGGHMSILVTTTNTGTLSARASPRCSLVMPTIPALAPTINIPKSGACPVIPNTVVFR 1237
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BLAST of EMLSAG00000000331 vs. C. finmarchicus
Match: gi|592863673|gb|GAXK01093889.1| (TSA: Calanus finmarchicus comp48282_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 2.979e-1
Identity = 19/43 (44.19%), Postives = 25/43 (58.14%), Query Frame = 0 
Query:   31 GTLRARANPKCSLVMPTIPALAPIINIPKSGACPVMPNTILHR 73
            GT +A A P+CS V+PT PALA   +I   G  PV    ++ R
Sbjct: 1016 GTSKATAMPRCS*VIPTTPALADTTSIT*CGQ*PVRAEMVVLR 1144
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BLAST of EMLSAG00000000331 vs. C. finmarchicus
Match: gi|592863674|gb|GAXK01093888.1| (TSA: Calanus finmarchicus comp48282_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 2.980e-1
Identity = 19/43 (44.19%), Postives = 25/43 (58.14%), Query Frame = 0 
Query:   31 GTLRARANPKCSLVMPTIPALAPIINIPKSGACPVMPNTILHR 73
            GT +A A P+CS V+PT PALA   +I   G  PV    ++ R
Sbjct: 1016 GTSKATAMPRCS*VIPTTPALADTTSIT*CGQ*PVRAEMVVLR 1144
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BLAST of EMLSAG00000000331 vs. C. finmarchicus
Match: gi|592885811|gb|GAXK01072564.1| (TSA: Calanus finmarchicus comp1686092_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 7.289e+0
Identity = 17/69 (24.64%), Postives = 31/69 (44.93%), Query Frame = 0 
Query:   25 GNFLHPGTLRARANPKCSLVMPTIPALAPIINIPKSGACPVMPNTILHRRGPNPDFHGLVYSRHFLWSQ 93
             NF +   L ++      L +P +    P++ I +    P+ P  +  R+ P+P FH L+     +WS 
Sbjct:  216 ANFSYQSKLLSQLILCIDLTLPNLSM*CPLLIIARDCPLPLFPEKM--RKHPHPSFHTLLTLSPRIWSM 416
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BLAST of EMLSAG00000000331 vs. L. salmonis peptides
Match: EMLSAP00000000331 (pep:novel supercontig:LSalAtl2s:LSalAtl2s104:450307:450913:-1 gene:EMLSAG00000000331 transcript:EMLSAT00000000331 description:"maker-LSalAtl2s104-snap-gene-4.28")

HSP 1 Score: 313.153 bits (801), Expect = 2.736e-110
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 
Query:    1 MGHSRSETNLVAESTTSSLDLTRTGNFLHPGTLRARANPKCSLVMPTIPALAPIINIPKSGACPVMPNTILHRRGPNPDFHGLVYSRHFLWSQSPKYRCPQRTFVLTLAHACDERVFDEQILFHCRVLRELELQGEYFSPHPHSPPLPRGSP 152
            MGHSRSETNLVAESTTSSLDLTRTGNFLHPGTLRARANPKCSLVMPTIPALAPIINIPKSGACPVMPNTILHRRGPNPDFHGLVYSRHFLWSQSPKYRCPQRTFVLTLAHACDERVFDEQILFHCRVLRELELQGEYFSPHPHSPPLPRGSP
Sbjct:    1 MGHSRSETNLVAESTTSSLDLTRTGNFLHPGTLRARANPKCSLVMPTIPALAPIINIPKSGACPVMPNTILHRRGPNPDFHGLVYSRHFLWSQSPKYRCPQRTFVLTLAHACDERVFDEQILFHCRVLRELELQGEYFSPHPHSPPLPRGSP 152
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000331 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000331 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592859905|gb|GAXK01097657.1|8.318e-2253.40TSA: Calanus finmarchicus comp38631_c0_seq1 transc... [more]
gi|592863673|gb|GAXK01093889.1|2.979e-144.19TSA: Calanus finmarchicus comp48282_c2_seq2 transc... [more]
gi|592863674|gb|GAXK01093888.1|2.980e-144.19TSA: Calanus finmarchicus comp48282_c2_seq1 transc... [more]
gi|592885811|gb|GAXK01072564.1|7.289e+024.64TSA: Calanus finmarchicus comp1686092_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000331 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000003312.736e-110100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s104:45030... [more]
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BLAST of EMLSAG00000000331 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000331 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000331 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000331 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s104supercontigLSalAtl2s104:450307..450913 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s104-snap-gene-4.28
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000331 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000331EMLSAT00000000331-696178Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s104:450307..450913-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000331-683097 ID=EMLSAG00000000331-683097|Name=EMLSAG00000000331|organism=Lepeophtheirus salmonis|type=gene|length=607bp|location=Sequence derived from alignment at LSalAtl2s104:450307..450913- (Lepeophtheirus salmonis)
ATGGGACATAGTCGTTCGGAAACAAATTTAGTCGCTGAAAGTACAACATC
ATCACTGGATTTAACAAGAACAGGAAACTTTCTGCATCCCGGTGATTTTA
GGATACGAACCAAGAGCTTCAAAGTATCCTGAAGTACATTAGGTGGACAC
ATGTCAATTTTTGTAACAACAACAAAAACAGGAACACTAAGAGCAAGGGC
TAATCCTAAATGTTCCTTAGTCATGCCCACAATACCAGCATTGGCTCCAA
TCATTAACATTCCAAAATCCGGGGCATGTCCTGTCATGCCAAACACGGTT
GTTTTTAGATAGCGTTCGTGKCCTGCCAAGTCTATAAAAGTAATAACTTT
GGAAGATTCTTCACAGACGCGGACCCAATCCAGATTTCCATGGTCTGGTT
TATTCACGACATTTCCTATGGAGTCAAAGCCCAAAATATCGTTGCCCACA
GAGGACGTTCGTCCTGACTCTTGCTCATGCTTGTGACGAAAGAGTTTTTG
ACGAGCAAATCCTCTTCCATTGTCGAGTTCTCCGTGAGTTAGAACTCCAA
GGAGAGTACTTTTCCCCGCATCCACATTCCCCACCACTGCCACGCGGATC
TCCATGA
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