EMLSAG00000000332, EMLSAG00000000332-683098 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000332
Unique NameEMLSAG00000000332-683098
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000332 vs. C. finmarchicus
Match: gi|592859905|gb|GAXK01097657.1| (TSA: Calanus finmarchicus comp38631_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 4.114e-2
Identity = 16/35 (45.71%), Postives = 21/35 (60.00%), Query Frame = 0 
Query:   34 EGCCLTTSNFSDRHSLSVDTLDGNRSKIAQRVWSQ 68
            E  CL T +   RH L V  LD +  K++QRVW+Q
Sbjct:  625 EAGCLPTLHLCHRHPLPVYGLDSDGCKVSQRVWAQ 729
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BLAST of EMLSAG00000000332 vs. C. finmarchicus
Match: gi|592764983|gb|GAXK01189585.1| (TSA: Calanus finmarchicus comp2861496_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 4.364e-2
Identity = 13/44 (29.55%), Postives = 21/44 (47.73%), Query Frame = 0 
Query:   11 LVTSSETIHTHLCNGCLNKSMKCEGCCLTTSNFSDRHSLSVDTL 54
             V  S +I  H  N  +       G C  +SNF + + +++DTL
Sbjct:  227 FVIFSASIEIHFVNKFVPTIFILLGSCFISSNFVNMYDVAIDTL 358
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BLAST of EMLSAG00000000332 vs. C. finmarchicus
Match: gi|592930227|gb|GAXK01028318.1| (TSA: Calanus finmarchicus comp5791931_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 3.159e+0
Identity = 16/51 (31.37%), Postives = 29/51 (56.86%), Query Frame = 0 
Query:   10 CLVTSSE-TIHTHLCNGCLNKSMKCEGCCLTTSNFSDRHSLSVDTLDGNRS 59
              +T +E  +  H+ +   NK  KCE C  TTS+ +D +++ ++T+ G  S
Sbjct:  194 AFITGTEMELEHHILDVHWNKQYKCEKCDFTTSSVND-YNVHINTIHGTES 343
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BLAST of EMLSAG00000000332 vs. C. finmarchicus
Match: gi|592898363|gb|GAXK01060012.1| (TSA: Calanus finmarchicus comp757876_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.004e+0
Identity = 12/39 (30.77%), Postives = 21/39 (53.85%), Query Frame = 0 
Query:    3 DELKVNRCLVTSSETIHTHLCNGCLNKSMKCEGCCLTTS 41
            D L+    L+ S   ++ H   GC+NK + C+  C++ S
Sbjct: 1336 DRLQNQAPLICSGIVMNLHPMTGCINKLINCKQACISVS 1452
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BLAST of EMLSAG00000000332 vs. C. finmarchicus
Match: gi|592948794|gb|GAXK01009759.1| (TSA: Calanus finmarchicus comp2834922_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.884e+0
Identity = 11/26 (42.31%), Postives = 16/26 (61.54%), Query Frame = 0 
Query:   18 IHTHLCNGCLNKSMKCEGCCLTTSNF 43
            +H  LC GCL ++M C   CL ++ F
Sbjct:  458 LHCTLCCGCLCRTMYCSAPCLASAQF 535
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BLAST of EMLSAG00000000332 vs. C. finmarchicus
Match: gi|592779848|gb|GAXK01174720.1| (TSA: Calanus finmarchicus comp4934667_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.645e+0
Identity = 17/58 (29.31%), Postives = 26/58 (44.83%), Query Frame = 0 
Query:    5 LKVNRCLVTSSETIHTHLCNGCLNKSMKCEGCCLTTSNFSDRHSLSVDTLDGNRSKIA 62
            L+  RC  TSS T  +H+   C  + +     C T+S+ + R    V  L G  +  A
Sbjct:  166 LENPRCHSTSSSTQCSHIWTNCRGQGIAPSSPCFTSSSRTPRPLAPVSLLTGRWAGTA 339
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BLAST of EMLSAG00000000332 vs. L. salmonis peptides
Match: EMLSAP00000000332 (pep:novel supercontig:LSalAtl2s:LSalAtl2s104:451279:451697:-1 gene:EMLSAG00000000332 transcript:EMLSAT00000000332 description:"maker-LSalAtl2s104-snap-gene-4.29")

HSP 1 Score: 140.198 bits (352), Expect = 7.404e-45
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 
Query:    1 MFDELKVNRCLVTSSETIHTHLCNGCLNKSMKCEGCCLTTSNFSDRHSLSVDTLDGNRSKIAQRVWSQ 68
            MFDELKVNRCLVTSSETIHTHLCNGCLNKSMKCEGCCLTTSNFSDRHSLSVDTLDGNRSKIAQRVWSQ
Sbjct:    1 MFDELKVNRCLVTSSETIHTHLCNGCLNKSMKCEGCCLTTSNFSDRHSLSVDTLDGNRSKIAQRVWSQ 68
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000332 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000332 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592859905|gb|GAXK01097657.1|4.114e-245.71TSA: Calanus finmarchicus comp38631_c0_seq1 transc... [more]
gi|592764983|gb|GAXK01189585.1|4.364e-229.55TSA: Calanus finmarchicus comp2861496_c0_seq1 tran... [more]
gi|592930227|gb|GAXK01028318.1|3.159e+031.37TSA: Calanus finmarchicus comp5791931_c0_seq1 tran... [more]
gi|592898363|gb|GAXK01060012.1|5.004e+030.77TSA: Calanus finmarchicus comp757876_c0_seq1 trans... [more]
gi|592948794|gb|GAXK01009759.1|5.884e+042.31TSA: Calanus finmarchicus comp2834922_c0_seq1 tran... [more]
gi|592779848|gb|GAXK01174720.1|7.645e+029.31TSA: Calanus finmarchicus comp4934667_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000332 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000003327.404e-45100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s104:45127... [more]
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BLAST of EMLSAG00000000332 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000332 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000332 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000332 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s104supercontigLSalAtl2s104:451279..451697 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s104-snap-gene-4.29
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000332 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000332EMLSAT00000000332-696179Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s104:451279..451697-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000332-683098 ID=EMLSAG00000000332-683098|Name=EMLSAG00000000332|organism=Lepeophtheirus salmonis|type=gene|length=419bp|location=Sequence derived from alignment at LSalAtl2s104:451279..451697- (Lepeophtheirus salmonis)
ATGTTTGACGAACTTAAAGTGAACCGATGCCTTGTCACCAGTTCTGAGAC
AATCCACACTCATCTTTGTAATGGATGCCTTAACAAGAGTATGAAAGTAA
ATAACTCAATGACTAATACAATCAACTTATATATTACTGTCTGCCGAATG
GATCCACAGTGAACCATGGCTTGATATCTGGCAGCAATGGTTGTGGGATG
ATGAAGMACCATGATATCCCCTTCGAAATCCCAACAGGACTGTGGTTCCA
AAGAGGGGGCCAGCATTACCATGCCTTTCCGTATTGCCGATCTCTTTATT
TTTTTAAGTGCGAAGGATGCTGTTTGACCACTTCGAACTTCAGTGACCGG
CATTCGCTTTCTGTGGATACTCTTGACGGCAATAGAAGTAAAATTGCCCA
AAGGGTCTGGTCCCAGTAA
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