EMLSAG00000000338, EMLSAG00000000338-683104 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000338
Unique NameEMLSAG00000000338-683104
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000338 vs. C. finmarchicus
Match: gi|592931182|gb|GAXK01027371.1| (TSA: Calanus finmarchicus comp341639_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 5.199e-1
Identity = 10/27 (37.04%), Postives = 20/27 (74.07%), Query Frame = 0 
Query:  119 KTVPNFYYMKAEDIPGFSRFTLNDVIQ 145
            + VPNF Y+ AE +PG+ +F  +++++
Sbjct:  654 RVVPNFIYLNAEQMPGYEKFEDHEIVR 734
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BLAST of EMLSAG00000000338 vs. C. finmarchicus
Match: gi|592931181|gb|GAXK01027372.1| (TSA: Calanus finmarchicus comp341639_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 5.838e-1
Identity = 10/27 (37.04%), Postives = 20/27 (74.07%), Query Frame = 0 
Query:  119 KTVPNFYYMKAEDIPGFSRFTLNDVIQ 145
            + VPNF Y+ AE +PG+ +F  +++++
Sbjct:  628 RVVPNFIYLNAEQMPGYEKFGDHEIVR 708
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BLAST of EMLSAG00000000338 vs. C. finmarchicus
Match: gi|592874318|gb|GAXK01083244.1| (TSA: Calanus finmarchicus comp449186_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.223e+0
Identity = 11/25 (44.00%), Postives = 19/25 (76.00%), Query Frame = 0 
Query:  121 VPNFYYMKAEDIPGFSRFTLNDVIQ 145
            VPNF +++A+ IPG+  F L++ I+
Sbjct:  215 VPNFIHLQADKIPGYETFKLDEYIR 289
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BLAST of EMLSAG00000000338 vs. C. finmarchicus
Match: gi|592874317|gb|GAXK01083245.1| (TSA: Calanus finmarchicus comp449186_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 1.686e+0
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 0 
Query:  121 VPNFYYMKAEDIPGFSRFTLNDVI 144
            VPNF +++A+ IPG+  F L++ I
Sbjct:  218 VPNFIHLQADKIPGYETFKLDEYI 289
[Close]
BLAST of EMLSAG00000000338 vs. C. finmarchicus
Match: gi|592874319|gb|GAXK01083243.1| (TSA: Calanus finmarchicus comp449186_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 1.787e+0
Identity = 11/25 (44.00%), Postives = 19/25 (76.00%), Query Frame = 0 
Query:  121 VPNFYYMKAEDIPGFSRFTLNDVIQ 145
            VPNF +++A+ IPG+  F L++ I+
Sbjct:  248 VPNFIHLQADKIPGYETFKLDEYIR 322
[Close]
BLAST of EMLSAG00000000338 vs. L. salmonis peptides
Match: EMLSAP00000000338 (pep:novel supercontig:LSalAtl2s:LSalAtl2s104:554871:558592:-1 gene:EMLSAG00000000338 transcript:EMLSAT00000000338 description:"augustus_masked-LSalAtl2s104-processed-gene-5.1")

HSP 1 Score: 310.842 bits (795), Expect = 2.319e-109
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0 
Query:    1 MRGFLSLSLLILLGVLTVSGYPNQHQHKRRVAQRYTPTHPFGRIQQFHNGVVDFRRRRFSSRPRKNRFFGPAPLKNKPFDERRFRHPLSNFRSAPKKVIHVAKLPLNLRREIKEPSSLKTVPNFYYMKAEDIPGFSRFTLNDVIQPESSFATLN 154
            MRGFLSLSLLILLGVLTVSGYPNQHQHKRRVAQRYTPTHPFGRIQQFHNGVVDFRRRRFSSRPRKNRFFGPAPLKNKPFDERRFRHPLSNFRSAPKKVIHVAKLPLNLRREIKEPSSLKTVPNFYYMKAEDIPGFSRFTLNDVIQPESSFATLN
Sbjct:    1 MRGFLSLSLLILLGVLTVSGYPNQHQHKRRVAQRYTPTHPFGRIQQFHNGVVDFRRRRFSSRPRKNRFFGPAPLKNKPFDERRFRHPLSNFRSAPKKVIHVAKLPLNLRREIKEPSSLKTVPNFYYMKAEDIPGFSRFTLNDVIQPESSFATLN 154
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000338 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000338 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592931182|gb|GAXK01027371.1|5.199e-137.04TSA: Calanus finmarchicus comp341639_c1_seq1 trans... [more]
gi|592931181|gb|GAXK01027372.1|5.838e-137.04TSA: Calanus finmarchicus comp341639_c1_seq2 trans... [more]
gi|592874318|gb|GAXK01083244.1|1.223e+044.00TSA: Calanus finmarchicus comp449186_c0_seq2 trans... [more]
gi|592874317|gb|GAXK01083245.1|1.686e+045.83TSA: Calanus finmarchicus comp449186_c0_seq3 trans... [more]
gi|592874319|gb|GAXK01083243.1|1.787e+044.00TSA: Calanus finmarchicus comp449186_c0_seq1 trans... [more]
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BLAST of EMLSAG00000000338 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000003382.319e-109100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s104:55487... [more]
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BLAST of EMLSAG00000000338 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000338 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000338 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000338 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s104supercontigLSalAtl2s104:554871..558592 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s104-processed-gene-5.1
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000338 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000338EMLSAT00000000338-696185Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s104:554871..558592-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000338-683104 ID=EMLSAG00000000338-683104|Name=EMLSAG00000000338|organism=Lepeophtheirus salmonis|type=gene|length=3722bp|location=Sequence derived from alignment at LSalAtl2s104:554871..558592- (Lepeophtheirus salmonis)
ATGAGAGGTTTTTTATCGGTAAGTGAACTCAATACTCATTGCATCTATTT
CCCCTTATCTCTCTGTCAATCTACATAATATTCAATTTAATGGTTTTTTA
CGTAATAAATGGTGAGCTGACATAAAAACAGTCTGGAACCAAAATTAAGA
AACGAAAAATATGTGCCAACAAAGCCCAATATTTCATGTATATATATTGA
TCAGGTATAGGCTTTGTATCTAAATTCATGGGATGAGTTGAATGCTCAAT
AATATTGACTATAGTTTAAAGCTTATATAAAATTAAGAGAGTGCCTTTGA
GCTCCAAATGCACTTTTAAATGAAATCATCGATCAATTTCTCATTTAGTC
ATTGTGACGATAATTTTTGCTTATTAGAGTGCAACTTGCGGCGTCTTCAA
AGGATTAATCCGAGTAGTTTGTTGATGGAAATTGACTATAAATATATACG
AAAAATAACTCTCATGACTCAATTTTAAGATAAGTTGTTCTAGCTTGTTT
TTGTGTTGATCGACCCTAGGCATAAATGTTGACAAGTTTTGGAATAAGAA
GTCACATGGTATACACTGACTTAGTTGTATTACTTTTTGTGAGCTTGTTG
CAATGCTGACCAGGTTTCTACAAATTTATAAATCAAGACTCGATTTTATG
GATATTTGTATACAGATCTCGGAACCCATTCAAAAAATTCTGCACATAAT
ATCAATAATAATAATTTAGAGTGGTATCCGTACTACCAAGGTGCGGCACA
ATATCCTTGATCATTAATGTAAGGTTACTACTTAGTTTTGTAGTGTGCAC
AGAGTACNATATTTAGGTGTGGAATTTTATCTTCATATATGTATGATTTA
TTTTGCCATTTGCGATTTATTACCTATATTCTTTGGAAAGTATAATTGAT
GATTCTTAATCATCTATTTACTATTTTGTTAGGCTCACATCCTTCATATT
TATCAAGAAATTACCATAATAAAAACACCGAAATTTAACTTCCCAGAAGA
ACTTCTATATTATATTATTTTTAAAAATATAACATTTTAATTTTACTTAT
ATTTTCCTAACTTTTCTATTGAAAATTATTAGTTCATTTGATTGGAGCCC
TTAGGGAGTGTATTCTATTAAAGTGTTGCTTCTATAACTAACAATGGACA
TTGATTAAAATATGTATTATAATGTAAAATTGATTGGTTATAAAAATCTT
CCACATGGCCTTTACATGATAATTATTTCTCTTGTATATTCCTAAAATTC
TTCGAGTCCTTGAAATCCTTCGACAGGAAGTATGTGTGTGTGCTTGTTTT
TAACATAATTTTCATATTTCTTTTAAAAGAAAAAAAAACTATGATTAAGA
CCTTCAAAAAACCAAAGGGTTTTTCTTCTGTTGTTTTGAGCATGTTAAGA
AGGCACGATTTCCATATTTATAAAAAAAGGTTTTTTGAAGGATTTTTGGG
CATCCTGCACACATGATAGGCCCAGACTTGGGCCTATGTTATTTAATAAC
CATGATTATAATAAATTTCTCCCCCCCCCCCCCCCAATAAATTGCATGTG
TGAGAAATTCCTTTATAAAGGAAGTGAGATCCTAGGGCATGTAGAAACTT
CATCTATATATTTTATATAAGCATATATCATGACATATTATACATGAAAT
TGACATTCTATTTTTGATGCTACTGAAGTTCCATCAAATACTTATTATAG
GAACAGGATCCATGCTTTATATATAAAGGAGGTCCCTATTTAAGGCAGTT
TCAATCACCACAGATGCCGGATAACATTGTGATTGGAATTATTCTTACTC
TCCGTTTAGTCAAGTATATTTCCCGCATATCGCATTCATTTAATATTAAA
ATTCAAAATAATGAAAAACTAAATCTTATGGTAAACAAGAATTTTTGTAG
TTGTTGATGAGTTCATTCATACTATGCCTATATATTCATATTATAGAAGT
TTATAATTTTGCATAGGGGGGGGGGGGATTGTCCTGTAAGTATTTGATTT
GATACCTAGACTTTTGGCTATTACTTCTTATACAAACTAGCAATTAAAAA
GATTGCTGAATAAATATCGGTAAAGTTCTGATTATTTTAATTTTAAAGTA
TTAAAAYGACCAAATAAAAAATCAAGTAAATACCCAATTCAGATTAAATT
TTGAAACTACTTTACAAGTATGTTGTCTGTCATACATTATTTTATATATA
ATTTATAATTAAAACAATCTTTTGAGTGTCCTAACCTTACTAAAAGAACG
AAAGAAAAATAGTAAAAAGTGCACTTTGAAAAATAATTTCCCCCATTTTT
TCAGATTTTACTGCTAAAAAAAAAGTCCACAAAAAACGCAGAATTAATCA
TATATTATGCAGATTTTTCTTGTTCCCTAAAACTGCGATAAGCTGGGAAA
CCCCTGTAATTATGGTTCAATGATTAAAAATAAGAACGAATGAAATAGTA
TCTAATTTTTCCTCGGGCAAGGCCGATACAAAGTCATTTTATAGATGAAA
TAATGTAGATAACATTTTTTTTTGCACGGATCTATCAAGGCCCCTTTGAT
TTTTCTTATTTTGACGTGTAAACCATTTTTTGTAACCAAACAACTTCATT
TCCAGTTTGTAAATAGCATAAGCAAGATGTAAATTTTTTGTAATAAAAAA
ATATAATGTAGTTATAATTATGAATGAAGAATTTATACTCAACATGTATA
TAAAATAATGTTTTAATTTGATGTTCTTTAGATAGACGATATATTCAGGA
ATTTTATTGTTAATTACGAATTGATAATCACATTATATATAGTTGAAATG
TCCACAGTTATATTACACGTACATACATAAAATGTGAGATATTAATATAG
ACCTAATTAGAACAATAGAAACAATTAATAGAATGTAATTCATATGACGG
TAGTTGCAATGGAAAAAGGGGTAATAGGATGTACAAATTGTAACTTATAC
AATCGGTTTATACAAGTTACAACTTGTACATAATTCCAAATTTGTACGCA
GCATATCTTTAAATTTATATATTTGCATAATTTAAAACTGAATCATATGA
TTGAAACCCTTAGTATTGTATTATTTACTAGTAAATTGCTGTTTTAATAA
CTGATTATACTTTCATAATTAATTTATCTCTTTTTATTACATTTTTTAGT
TATCCCTTTTGATTCTCCTTGGAGTATTGACTGTGTCTGGATATCCGAAT
CAACATCAACATAAGCGACGTGTCGCTCAAAGATACACCCCAACACATCC
TTTCGGACGGATTCAACAATTTCATAACGGAGTCGTTGATTTTAGACGAA
GACGATTCTCCTCACGTCCACGAAAGAATAGATTCTTTGGACCAGCTCCT
CTCAAAAATAAACCATTTGACGAGAGGTAAGTTCCTTGTGATTAACACCT
CAGCCTATAACTAATGATGTTTTTTTTTACTTTTTGATTAGACGATTCCG
ACATCCTTTGTCAAACTTCCGCTCTGCTCCTAAGAAAGTTATTCACGTTG
CCAAATTGCCTCTCAACTTGAGGAGAGAAATCAAGGAGCCCTCAAGCCTC
AAAACTGTTCCTAATTTTTATTATATGAAAGCTGAGGATATTCCAGGATT
CTCTCGATTTACTTTAAACGATGTTATTCAACCTGAAGTAAGACTTGTTA
TACACCTATGGGATCTAATTACTAATTTCATTCTTTTGCTTCTTTCAGAG
TTCCTTTGCCACCTTAAACTAA
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