EMLSAG00000000349, EMLSAG00000000349-683115 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000349
Unique NameEMLSAG00000000349-683115
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000349 vs. C. finmarchicus
Match: gi|592813020|gb|GAXK01141548.1| (TSA: Calanus finmarchicus comp191846_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.935e+0
Identity = 9/23 (39.13%), Postives = 13/23 (56.52%), Query Frame = 0 
Query:   32 GCFSCETLMIPENIDGISFWKHR 54
             CF+C+    P+ +  ISFW  R
Sbjct: 1403 ACFTCQLQFTPQQLSHISFWSDR 1471
[Close]
BLAST of EMLSAG00000000349 vs. L. salmonis peptides
Match: EMLSAP00000000349 (pep:novel supercontig:LSalAtl2s:LSalAtl2s104:872395:880227:1 gene:EMLSAG00000000349 transcript:EMLSAT00000000349 description:"maker-LSalAtl2s104-augustus-gene-8.14")

HSP 1 Score: 217.624 bits (553), Expect = 4.389e-74
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 
Query:    1 MTNEVCEISIRRVRMDDHTKIVKLFQASLERGCFSCETLMIPENIDGISFWKHRLGSVRIESILNEPRVRNHEVIVRLNRMEMKEYYERSEMNQEEDEEVLDLFDVL 107
            MTNEVCEISIRRVRMDDHTKIVKLFQASLERGCFSCETLMIPENIDGISFWKHRLGSVRIESILNEPRVRNHEVIVRLNRMEMKEYYERSEMNQEEDEEVLDLFDVL
Sbjct:    1 MTNEVCEISIRRVRMDDHTKIVKLFQASLERGCFSCETLMIPENIDGISFWKHRLGSVRIESILNEPRVRNHEVIVRLNRMEMKEYYERSEMNQEEDEEVLDLFDVL 107
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000349 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000349 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592813020|gb|GAXK01141548.1|1.935e+039.13TSA: Calanus finmarchicus comp191846_c0_seq1 trans... [more]
back to top
BLAST of EMLSAG00000000349 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000003494.389e-74100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s104:87239... [more]
back to top
BLAST of EMLSAG00000000349 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000349 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000349 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000349 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s104supercontigLSalAtl2s104:872395..880227 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s104-augustus-gene-8.14
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000349 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000349EMLSAT00000000349-696196Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s104:872395..880227+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000349-683115 ID=EMLSAG00000000349-683115|Name=EMLSAG00000000349|organism=Lepeophtheirus salmonis|type=gene|length=7833bp|location=Sequence derived from alignment at LSalAtl2s104:872395..880227+ (Lepeophtheirus salmonis)
AAAGAGAAAAAAGAAGAGGAAAAAAACGAGCGTGTACTCTTCTACGTGTG
TGTGAGAGTGAAGAGAGAGACGATAAAAAAAATTGGCCGTCATTGGCGCG
CGCATTATTTAAAATCATTTGTTTTTCTTATTTTTTTCCCGGCCGAGGCC
GCCGTTCTAAAGTAGCTATATAATATTTCTTTTCTTTTTTTTTATTTCCA
TCAGTGAATTAAACAAGAAATAGTGATTTTGCCGCTCGGTCCTGAGTCCT
CCTCTCTCTCTCTTCCTCTCCCTACTTCCAATGCCATGACGAACGAAGTC
TGTGAGATCTCTATCCGTCGTGTCCGTATGGATGATCATACCAAGATTGT
CAAACTCTTTCAGGTCAGTTACTGATGATTGAATCCATTTTCTTTCTTTC
TTTTTCTATTCATGATAATAAATAACAATCAATGGCCATACTTTATCTTT
ATAATATAATAATAGGCCTTGATCGACTTTATGTATTTGGCATTTGGTAG
CACTTTTATTTCTCTCTCTTTTCTTATCATATGAATTATGATCAGAATGA
TAAGTAGGAGGATGTCCAGAGTAATGAATTTCTTTTTCGAGACTCATGKC
CGAGCCAAAGTAGACATAATCCAGGCATAGCTCTTCCCTAAGAATGAAAA
TGACTCTCTCACCTCCTTGATGCTAGTTGGCTATACTAGTGGTTGATCCA
CTTCCAGTTATGTTTGATAGTTCATTTTTTCCTTCAATGAGCAAAGGCTA
ACGAGCTAAGTGGCTTCCATTCTCAATTAATAAGCCATCCTTATTTATTT
CATCTTTAATGGTAGTTGATTTTTCTTTCCAATTGGGAATCTATTGTTCA
TTCACAATTTATTGCTTCCTCCCCACATATCAGAAATCTACAATCTCCCC
TCTCTCCCTCCCTTTGATGGAGTCCAATAGGAATCAATTTCTTCTTTCCA
TGTGCAATATACTATTATTATTTTCATCATCTATTCATTTTTAATATATT
GCACACTTTTGTCATGTTTCAACTCCCATTGAGTTATTTTAATCAACTTT
CCCACCACCCGGTGAGTTCCAAATGAAAGCAATTGCTGTTACTTCCTTCA
TTCTCAGCATCATTATTGATAGTTTTGGATTCAAATAGTACCCGTACTAC
AGAAAAAAAAAACCTCTACATTACCAAAGCTCTAACTCTCTAAAAACTAC
TCAAACAATGTTATTTGAAAAACATCCTTAACTCGAATTATCAAAAAGGT
GAAGGAAAAAATTCATATCCAAATTTGTTTGAAGAAGCAATGAAGTACTT
ATCCATTCGTTACCAAGTGAGAAGATATTTTCTATTGCTGTTTGGCAATT
ATATCGAAAAGAAAATATAGAATTGATAGTGGTGCGGCTTAGATGTTAAT
GATAATACAATATGGCAACCTAAATTAATTTAATTTAGGCTTTGCCCTGA
TTATTTAGATGCAACATTAACAATTAATGTCCTACTATGCAAATAAATAT
TTCATAAAATTACCTACATTACTTGATTCATGCTTAAAATACTACCTTAT
TGAAGTGAAGTCAAACTGACTTCTTTGTTGAGCCTATTGTTAGATTTGAT
CCATTCAATGAAAACATATTTATCCTTGTCGAATGCCTTTACTCGAACTC
CATAGTTATAACTCGAATCCAATAATAATTATAATTGATAAGCTTTTATT
ATTATTATGTATAAGGAACATCCCAGTAACCTTCTCTCATCCGTCATTTT
TTCCATCCTTTTTCAGACATTTGACAAAGAAAAATACAAGTTCATTAAAA
CAGGGGAGCACAATAATAACAACAATAACCGTTCCAATCTCTCATTGGCG
GGMCTTCGGYTCGATGAAAGGGGAGGGATATATTTGAATCCTCTACTGGA
TTCACATTCAGCATATTTTAAGTAAGAGAACGTCACGACGGCTCAAGGTT
ACTATTCCTCGTATTTACTACATAATAAGAGATAATTATTTTGAAAAGAA
CCACATTATTTGTACCTTTGATAATAAAAAATAATATTCGTATGTCGTGT
ACATGTTCCAACTTGTGTAAGCAAATTATATAGCCTTCAAGTAAAAAACA
AGATAAAGAAATTTAAGTCCTTTTGATGAAAATAATGCAAAAGTTTCATA
TTCAATGGATAGTTGAACTATTACTGGTGTAATTTTTGACAATTTTGATT
ACTTATTACCAAATAATTATAAGTATTATGTGGCACATTTTAAATTTCAA
ATGGGCATAGTAATTATGCTAGTTGTAAGTATATCATAAATTCTTCATTT
TAATAAACCAAAATGTTATGATAACATTAATAGCTAGTTGTAATGTATAT
ATATATTCTAACTTGTACAATTTCTTTATACAATTTGCAACATGTACAGA
ACATAATATACATATAACTAAGTATATATTTATTTTCCCTCTAGATGCTA
CGTAGCAGAGGATTTAAATTCAAAGATCCTCGTGGGCTACATCCTATTCT
TCAACACCCTGGATGAAAAGGGCAATGATGATCCTGTGGCTGTGATAGAG
GATTTATTTGTCAAGTCTGCATATCGCTGTCGTGGTATTGCAACTCAACT
ATGGAGAAAAGTATTGAAGGTATATATATATTTATTTATCTACTATATAT
GCCCAAAATATACTCAGATTATCTCTGAGTTAAACTTTTACAACATGAAT
TATTTACATATTTTGTGTGTATTATATTTAATAATGGTGCGTAGATTCCT
CGCCTTTCTACGCCCATAGAAGAAATGGTATTAATCCTTCAACATACGGA
GTTTATTATTTACCGTTAAACACAGCTGGTATTTGTACAAAATATGGGGA
GAAGGGAGGGATCTGAAGGGGATCTTTTGTTATCATTATTTTTATTTTTT
GACTATATATACATATGTTGATAAAAAAATATCTTATTACTCCTAACGAC
TATAAGGTTTGCCATGTGATCATTATTATAATCAATGGTCAACTAGCAAA
ATCAATTTAGTTAATAGTTTTTATTTAGTTATGTACTAAATAAATACGGT
TAAATTCTATAAAGCTTTTATCAAAAAAAAAAAATGAACTTTCGTTTAGA
AAAAGAGGTCAAGAATGATTGGAATGGGCTCTACGTTTTGATTCTATACA
TAGATTTTCAAATGATATATAATATAATATGCTGGGGAATCTGTAATTTC
GTATTTTTTGCTTTAGAAGAAGTGTAACAATTATCCAATTTATGGCCCGT
TCTAGTCGAAAACTTGATGCCATCGGTAATCCAACTTCATAATGCCCTTG
TTGCTATTGGCAAAACACTCTGACAACCAATTTTCCCAGGCCTCTATTGA
GGCCAAATTTGTAACCCCTAGCGAATTGGCAATAGATAAGAACAGGTAAT
AGTCACTTGGTGCCATGTCAGGACTGTAGGGTTGATGCATAAGAACTTCT
CATCCGAGCTCCCGGAGCTTCTTGCGCTTCATCAAAGATGTATGCAGCCT
AGCGTTGTCTTGATTATGTCTTGTTGTCTCCTATTCTACAATACTGGCTG
STCCTGTTCGATCGCTAGCTTCAAACGGTTGAGTTGCACACAGTAGAGMG
CAGAAATGAGSGGGGGGGGGGGGGATTGCTCGAACCACATTTCTGCAATA
CAAACCGAAAGAATATCGGCTACATATATATAACAAATTTTCTTGGTCTC
TTTCGACACGTTTTTCGCTTTCAAGTAGTAAAAATGTAAAATATGGCGAA
TTTCTTTCTTTGAGACCTCCATACCCGACACTTGATAATTCACGACTGAA
CTGGCCAAGCGCAATACTGCCCAAAAAGCGTTTATAGTATATACTCACAC
CTTAGCTTATTGTATGTTCCAATGTCACCAATAATGAACAAGATATACTT
AGTTAAAAAAAGGGGGTGGGAAATACGAAATTACTTTTTCCCCAAACTAA
TAGTAATATTTAGATTCTTACATGATAGATTGAATAAGCACGGAGTTAAG
GGTTTGTTAAAATCAGAACTGGTATGAAAAATTTAACCTGCATTTAATCT
GTTCATAACTCTTGCTCCGGTCAAGTTATTAAACCATGAAATTTTAAACA
TAGGCTAACTAGATATTTATATCTAAGGTGACCTTGTAATAAGTATGCAT
GTTTTGGGCCCTCTTCCATGTTCGCGTTTGGTTCACATAATCTCCATATT
TAATTATAGTTTATGTTTGCGATTTCAAAATCCCATCTACCTGCTTATAC
ATGTACTTTATACATAGCTTCTAAAGTTAGTTATAATTTCATCCAAATCT
CGGACATCAGTTGTGTTCAGTACGATATTTTACATTTTTATGTAATTACC
CATATATAAACATTCTATATTTACGTAGATTACTAGATATTTCTTATTTC
CTATTATGTAGGAAAAAAACAAAAAACGTCAAGAGCTAATGTAATTAATT
ATCCTTCATGTTTACAGGCTTCACTGGAGCGTGGATGTTTTTCTTGTGAG
ACACTAATGATCCCTGAAAATATAGATGGTATCTCCTTTTGGAAACATCG
TCTTGGTTCAGTACGGATTGAATCCATTCTTAATGAACCTCGCGTACGAA
ATCATGAAGTTATAGTTAGACTTAATCGAATGGAGATGAAGGAATATTAT
GAAAGGAGTGAAATGAATCAGGAGGAAGATGAAGAAGTCCTGGATTTGTT
TGATGTTTTGTGATACATGGAACCAATTTGAATATTTAATTACTTCTCTG
ACTAACTCTTACTGCCATTCATTCAGTCGAACAAACCTTTTTGTCTGTAT
ACCTGTCGAATTGACTTGTCTATATTCATTTTCTATTTAAGTGATGTGCT
ATGATTGAATAACGAGGTTATTTTTTTTGTTGTTGAATGAAAACAATATT
TAAGACCTTAAATGCTCTATTTATAAGGTTTAAAAAATACTAAAAAGATT
TACCAATAATTTATTTTGTTGCATTTTGTTAACATACGAAATACCCGTGA
CATTGAAAGTACTAATTGCCTATTTAACAGGTGTCAACATCATACTAATA
ACTACTCACAAATACCAACGGGGTAGTTGCAGATGTCAAACTTGTTGAAT
ATTATTTTAAATATGCATTTTATTGGTATGTTTCATATTTGTACCAAAAA
CCATTTAAGGGTTAAAACCATTTTTCTTAGTTGTTACATCAAAAACTAAT
AACTCATTTAATACAAATATACGGACATAGAATTGAATAAAAATTGTGAA
ATAAGTAAATATATATTTTTTTGTCATTAAAGAAAGAAATACAAAAAATC
GTAACAACAATATATTTTTTTAATAGATTATCATAATAGCGTAAAATTTA
TATTTATATATTTCCGACTTTAAAAAAAAGATACATCAGCCACATCATAT
TGTTATAAAAATGGAATCTGCATCAATAACCGTATTTCTCCTAAAATGAA
GAGCAAATAATAATTAATTATGTAAATAAGTAAACGGGACCTTTACAACA
CTGAACCCACCTGTATTTGCGAATAGACCCCAGACGCCATTCCGGATAAT
TTACTAGCAACCTTAGTCACACCTTGTCTTACACTTTCTTTAACATCTTC
CATATCTGGAGATTGGATACGTGAGCCGGGAGTAACCTCCGTTCTGTTAA
AATAATCGGCAGAGGAGATGGAGMTTGATCCTTGGAAGCGGTTGAGATTA
GCGTCTTGAGAATCCTAATGGATGAAAAACAGGATTAGATAAATTGCATT
ATATTAATAAAATCAATGGAAATCATCCAGTATCACATACTTTCACTACA
GATATCTATCTAATCTTATCTCTGTAAAGCTCTTAAGCACAAATCATCAA
TGAATGTGACTACTTACATTGCGATCATTGTCAAAAAACATGTCCGATGA
AATTGCCTTTGCCTCACCAAATTTTTTGCTAGCTTCCACTGATGACGCAC
CATTGTAAGAATGAACTTTAGAGGACGACCTGACAAATATTAATAGATCA
TTTGATACTAAAAAGGTTACAAATTAGATCTACCTGTTGGAAGACGAGTT
ACTAAAACTATTGCCCCAAGAGCCCTTATCCTTAGTTGTATTTTTTTCCA
TTTTTAGTTTTTCAAATTCGCTTTCCCAGGAAATCATGGGATCAGAAAAT
CCTTTAAACATATTATCATCATTGTTAGTGTCAATATCATCCATATAGTT
GGAAGACCGATCAACAAATAAGTTGTTTTGTTTCTTATACCCAGAAGGCT
CCTCTTGAACAATTGTTATCGTATCACTCATTAGCGAGTGGCTGACTCCT
GAAGAAGCCCGGAACCCCATTCCGAGACGTTCAACTTGTTCAGCCTTTTT
AGGATCAGTTTTTTTCAAATTGTCTTCTTTTTTCTTTTGTTGGACGGATA
TATCGTGGTAGGCTAATCTCATGGATGAAGTTATTTCTTCCTCATCGACT
TTCTTAGTACTTTCATCTGCCATTTTGGAACGAATTTGATCAGCCATCTC
TGCTTCTTTTTCAATTTCTGAGAAGTCCTTCTTGACTTTGGTTGCTCCCA
ATCCTCCACCAAGTTTTTTAGCTCCGAGGCCACCCTTTTTAGCAGAGCTC
CTCTTGTTCATAATGGTGGATTTTCGTGGAGCTTGCACTGTTGATGCATG
GATGCCATCTACATTAGGTCCTTCAGTTGGATCAACTACTTCTTTTTTAA
TTGTGTCTGAAAGTTTTGGCTGAAAATTAAGAAAAAGAGACATTATATAT
ATTTATATATATAAATAGATTGAAATTATCAGAAAAATTACGAGCTGAAT
TACTTATATGATATAAAATAATCTGATGTGCACTTTTTTATACATTTTTT
TTTTTTTTTTAAATAAAYAAGTCAAACAAACTTGTGGTTTTGTAGAATAA
GTATTAATAACATATACAAACACTTGCAAGTAATACTGAACTTAATATAT
CTTACCAATTGACCGAGATATTCTAAATCATTCTACAATTTAAAAGATAA
AAAAAAAGATCACTATATAGTTAATGAACTATATCTCATACAAAGATAAA
TAAAAATAAAATCCAAATATTGCTTGGATGAAGTAAAAGAAAGATGCATA
ATTACAATGTTTTCTGGAAGGGGATTGGAATGATTTTGCGTAAAGAAATC
CTCATCCACCTCTTTGTCTTCAGTTTCCTTCTCCGGAGCCACGGCAGCAC
TCTCAATGAAGAGTTTGCTTCCATGTATTTTAATGGCTTGAACAGCAGCA
TTATGAAGCTTCTCCCGATAGAGTTGTGCCGTGCGAGACTTGTATTTAAC
TTGCACATCCGAAGTGAGAGTGTTATACTGTTGAAAGAACGCTTTTGCCC
CCGCATTGCCCCCTAATTGCATTTGTCGTAGCTGAACCCATGTCCAATTG
CAATCCAGGACGGTGGAGCGCACAAATGTCAAATGCACCCCCAGAGAACG
GTGAATTCCAGAGCAGTCGATGCAAATGAAGATCCCGTAGGTCACGGAGC
TCCAAGTGGGATTATTGGAGCCGCAATCAAAGCAAACCTACAAGTAGAAA
AAGAGGAAGGAGGGATGACGTGGCTCATCACACAATCAAGGGAAGGCTCC
CTCTCAAAAATAAGGGTTGGGCAACACTTACTTTATTAGCGGATTGGGAC
TTGAGGCGTTTGAAGATATGGGCAATGTCGTTCTTAGAGGGTCCATCCAT
GTTGGTAGGAAAATCTACGGGTCCACTTCCCAAGGGATGATTCTATGAAA
GCAACGAAGGTGGAGGAAGACGTCAGATAGCTGCTAAAACTTAAAGGGAA
AAACACTCACAGAAGGACACAGTCACAGTAAGA
back to top
Add to Basket