EMLSAG00000000349, EMLSAG00000000349-683115 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000349
Unique NameEMLSAG00000000349-683115
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000349 vs. C. finmarchicus
Match: gi|592813020|gb|GAXK01141548.1| (TSA: Calanus finmarchicus comp191846_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.935e+0
Identity = 9/23 (39.13%), Postives = 13/23 (56.52%), Query Frame = 0
Query:   32 GCFSCETLMIPENIDGISFWKHR 54
             CF+C+    P+ +  ISFW  R
Sbjct: 1403 ACFTCQLQFTPQQLSHISFWSDR 1471          
BLAST of EMLSAG00000000349 vs. L. salmonis peptides
Match: EMLSAP00000000349 (pep:novel supercontig:LSalAtl2s:LSalAtl2s104:872395:880227:1 gene:EMLSAG00000000349 transcript:EMLSAT00000000349 description:"maker-LSalAtl2s104-augustus-gene-8.14")

HSP 1 Score: 217.624 bits (553), Expect = 4.389e-74
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
Query:    1 MTNEVCEISIRRVRMDDHTKIVKLFQASLERGCFSCETLMIPENIDGISFWKHRLGSVRIESILNEPRVRNHEVIVRLNRMEMKEYYERSEMNQEEDEEVLDLFDVL 107
            MTNEVCEISIRRVRMDDHTKIVKLFQASLERGCFSCETLMIPENIDGISFWKHRLGSVRIESILNEPRVRNHEVIVRLNRMEMKEYYERSEMNQEEDEEVLDLFDVL
Sbjct:    1 MTNEVCEISIRRVRMDDHTKIVKLFQASLERGCFSCETLMIPENIDGISFWKHRLGSVRIESILNEPRVRNHEVIVRLNRMEMKEYYERSEMNQEEDEEVLDLFDVL 107          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000349 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000349 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592813020|gb|GAXK01141548.1|1.935e+039.13TSA: Calanus finmarchicus comp191846_c0_seq1 trans... [more]
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BLAST of EMLSAG00000000349 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000003494.389e-74100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s104:87239... [more]
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BLAST of EMLSAG00000000349 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000349 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000349 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000349 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s104supercontigLSalAtl2s104:872395..880227 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s104-augustus-gene-8.14
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000349 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000349EMLSAT00000000349-696196Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s104:872395..880227+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000349-683115 ID=EMLSAG00000000349-683115|Name=EMLSAG00000000349|organism=Lepeophtheirus salmonis|type=gene|length=7833bp|location=Sequence derived from alignment at LSalAtl2s104:872395..880227+ (Lepeophtheirus salmonis)
AAAGAGAAAAAAGAAGAGGAAAAAAACGAGCGTGTACTCTTCTACGTGTG TGTGAGAGTGAAGAGAGAGACGATAAAAAAAATTGGCCGTCATTGGCGCG CGCATTATTTAAAATCATTTGTTTTTCTTATTTTTTTCCCGGCCGAGGCC GCCGTTCTAAAGTAGCTATATAATATTTCTTTTCTTTTTTTTTATTTCCA TCAGTGAATTAAACAAGAAATAGTGATTTTGCCGCTCGGTCCTGAGTCCT CCTCTCTCTCTCTTCCTCTCCCTACTTCCAATGCCATGACGAACGAAGTC TGTGAGATCTCTATCCGTCGTGTCCGTATGGATGATCATACCAAGATTGT CAAACTCTTTCAGGTCAGTTACTGATGATTGAATCCATTTTCTTTCTTTC TTTTTCTATTCATGATAATAAATAACAATCAATGGCCATACTTTATCTTT ATAATATAATAATAGGCCTTGATCGACTTTATGTATTTGGCATTTGGTAG CACTTTTATTTCTCTCTCTTTTCTTATCATATGAATTATGATCAGAATGA TAAGTAGGAGGATGTCCAGAGTAATGAATTTCTTTTTCGAGACTCATGKC CGAGCCAAAGTAGACATAATCCAGGCATAGCTCTTCCCTAAGAATGAAAA TGACTCTCTCACCTCCTTGATGCTAGTTGGCTATACTAGTGGTTGATCCA CTTCCAGTTATGTTTGATAGTTCATTTTTTCCTTCAATGAGCAAAGGCTA ACGAGCTAAGTGGCTTCCATTCTCAATTAATAAGCCATCCTTATTTATTT CATCTTTAATGGTAGTTGATTTTTCTTTCCAATTGGGAATCTATTGTTCA TTCACAATTTATTGCTTCCTCCCCACATATCAGAAATCTACAATCTCCCC TCTCTCCCTCCCTTTGATGGAGTCCAATAGGAATCAATTTCTTCTTTCCA TGTGCAATATACTATTATTATTTTCATCATCTATTCATTTTTAATATATT GCACACTTTTGTCATGTTTCAACTCCCATTGAGTTATTTTAATCAACTTT CCCACCACCCGGTGAGTTCCAAATGAAAGCAATTGCTGTTACTTCCTTCA TTCTCAGCATCATTATTGATAGTTTTGGATTCAAATAGTACCCGTACTAC AGAAAAAAAAAACCTCTACATTACCAAAGCTCTAACTCTCTAAAAACTAC TCAAACAATGTTATTTGAAAAACATCCTTAACTCGAATTATCAAAAAGGT GAAGGAAAAAATTCATATCCAAATTTGTTTGAAGAAGCAATGAAGTACTT ATCCATTCGTTACCAAGTGAGAAGATATTTTCTATTGCTGTTTGGCAATT ATATCGAAAAGAAAATATAGAATTGATAGTGGTGCGGCTTAGATGTTAAT GATAATACAATATGGCAACCTAAATTAATTTAATTTAGGCTTTGCCCTGA TTATTTAGATGCAACATTAACAATTAATGTCCTACTATGCAAATAAATAT TTCATAAAATTACCTACATTACTTGATTCATGCTTAAAATACTACCTTAT TGAAGTGAAGTCAAACTGACTTCTTTGTTGAGCCTATTGTTAGATTTGAT CCATTCAATGAAAACATATTTATCCTTGTCGAATGCCTTTACTCGAACTC CATAGTTATAACTCGAATCCAATAATAATTATAATTGATAAGCTTTTATT ATTATTATGTATAAGGAACATCCCAGTAACCTTCTCTCATCCGTCATTTT TTCCATCCTTTTTCAGACATTTGACAAAGAAAAATACAAGTTCATTAAAA CAGGGGAGCACAATAATAACAACAATAACCGTTCCAATCTCTCATTGGCG GGMCTTCGGYTCGATGAAAGGGGAGGGATATATTTGAATCCTCTACTGGA TTCACATTCAGCATATTTTAAGTAAGAGAACGTCACGACGGCTCAAGGTT ACTATTCCTCGTATTTACTACATAATAAGAGATAATTATTTTGAAAAGAA CCACATTATTTGTACCTTTGATAATAAAAAATAATATTCGTATGTCGTGT ACATGTTCCAACTTGTGTAAGCAAATTATATAGCCTTCAAGTAAAAAACA AGATAAAGAAATTTAAGTCCTTTTGATGAAAATAATGCAAAAGTTTCATA TTCAATGGATAGTTGAACTATTACTGGTGTAATTTTTGACAATTTTGATT ACTTATTACCAAATAATTATAAGTATTATGTGGCACATTTTAAATTTCAA ATGGGCATAGTAATTATGCTAGTTGTAAGTATATCATAAATTCTTCATTT TAATAAACCAAAATGTTATGATAACATTAATAGCTAGTTGTAATGTATAT ATATATTCTAACTTGTACAATTTCTTTATACAATTTGCAACATGTACAGA ACATAATATACATATAACTAAGTATATATTTATTTTCCCTCTAGATGCTA CGTAGCAGAGGATTTAAATTCAAAGATCCTCGTGGGCTACATCCTATTCT TCAACACCCTGGATGAAAAGGGCAATGATGATCCTGTGGCTGTGATAGAG GATTTATTTGTCAAGTCTGCATATCGCTGTCGTGGTATTGCAACTCAACT ATGGAGAAAAGTATTGAAGGTATATATATATTTATTTATCTACTATATAT GCCCAAAATATACTCAGATTATCTCTGAGTTAAACTTTTACAACATGAAT TATTTACATATTTTGTGTGTATTATATTTAATAATGGTGCGTAGATTCCT CGCCTTTCTACGCCCATAGAAGAAATGGTATTAATCCTTCAACATACGGA GTTTATTATTTACCGTTAAACACAGCTGGTATTTGTACAAAATATGGGGA GAAGGGAGGGATCTGAAGGGGATCTTTTGTTATCATTATTTTTATTTTTT GACTATATATACATATGTTGATAAAAAAATATCTTATTACTCCTAACGAC TATAAGGTTTGCCATGTGATCATTATTATAATCAATGGTCAACTAGCAAA ATCAATTTAGTTAATAGTTTTTATTTAGTTATGTACTAAATAAATACGGT TAAATTCTATAAAGCTTTTATCAAAAAAAAAAAATGAACTTTCGTTTAGA AAAAGAGGTCAAGAATGATTGGAATGGGCTCTACGTTTTGATTCTATACA TAGATTTTCAAATGATATATAATATAATATGCTGGGGAATCTGTAATTTC GTATTTTTTGCTTTAGAAGAAGTGTAACAATTATCCAATTTATGGCCCGT TCTAGTCGAAAACTTGATGCCATCGGTAATCCAACTTCATAATGCCCTTG TTGCTATTGGCAAAACACTCTGACAACCAATTTTCCCAGGCCTCTATTGA GGCCAAATTTGTAACCCCTAGCGAATTGGCAATAGATAAGAACAGGTAAT AGTCACTTGGTGCCATGTCAGGACTGTAGGGTTGATGCATAAGAACTTCT CATCCGAGCTCCCGGAGCTTCTTGCGCTTCATCAAAGATGTATGCAGCCT AGCGTTGTCTTGATTATGTCTTGTTGTCTCCTATTCTACAATACTGGCTG STCCTGTTCGATCGCTAGCTTCAAACGGTTGAGTTGCACACAGTAGAGMG CAGAAATGAGSGGGGGGGGGGGGGATTGCTCGAACCACATTTCTGCAATA CAAACCGAAAGAATATCGGCTACATATATATAACAAATTTTCTTGGTCTC TTTCGACACGTTTTTCGCTTTCAAGTAGTAAAAATGTAAAATATGGCGAA TTTCTTTCTTTGAGACCTCCATACCCGACACTTGATAATTCACGACTGAA CTGGCCAAGCGCAATACTGCCCAAAAAGCGTTTATAGTATATACTCACAC CTTAGCTTATTGTATGTTCCAATGTCACCAATAATGAACAAGATATACTT AGTTAAAAAAAGGGGGTGGGAAATACGAAATTACTTTTTCCCCAAACTAA TAGTAATATTTAGATTCTTACATGATAGATTGAATAAGCACGGAGTTAAG GGTTTGTTAAAATCAGAACTGGTATGAAAAATTTAACCTGCATTTAATCT GTTCATAACTCTTGCTCCGGTCAAGTTATTAAACCATGAAATTTTAAACA TAGGCTAACTAGATATTTATATCTAAGGTGACCTTGTAATAAGTATGCAT GTTTTGGGCCCTCTTCCATGTTCGCGTTTGGTTCACATAATCTCCATATT TAATTATAGTTTATGTTTGCGATTTCAAAATCCCATCTACCTGCTTATAC ATGTACTTTATACATAGCTTCTAAAGTTAGTTATAATTTCATCCAAATCT CGGACATCAGTTGTGTTCAGTACGATATTTTACATTTTTATGTAATTACC CATATATAAACATTCTATATTTACGTAGATTACTAGATATTTCTTATTTC CTATTATGTAGGAAAAAAACAAAAAACGTCAAGAGCTAATGTAATTAATT ATCCTTCATGTTTACAGGCTTCACTGGAGCGTGGATGTTTTTCTTGTGAG ACACTAATGATCCCTGAAAATATAGATGGTATCTCCTTTTGGAAACATCG TCTTGGTTCAGTACGGATTGAATCCATTCTTAATGAACCTCGCGTACGAA ATCATGAAGTTATAGTTAGACTTAATCGAATGGAGATGAAGGAATATTAT GAAAGGAGTGAAATGAATCAGGAGGAAGATGAAGAAGTCCTGGATTTGTT TGATGTTTTGTGATACATGGAACCAATTTGAATATTTAATTACTTCTCTG ACTAACTCTTACTGCCATTCATTCAGTCGAACAAACCTTTTTGTCTGTAT ACCTGTCGAATTGACTTGTCTATATTCATTTTCTATTTAAGTGATGTGCT ATGATTGAATAACGAGGTTATTTTTTTTGTTGTTGAATGAAAACAATATT TAAGACCTTAAATGCTCTATTTATAAGGTTTAAAAAATACTAAAAAGATT TACCAATAATTTATTTTGTTGCATTTTGTTAACATACGAAATACCCGTGA CATTGAAAGTACTAATTGCCTATTTAACAGGTGTCAACATCATACTAATA ACTACTCACAAATACCAACGGGGTAGTTGCAGATGTCAAACTTGTTGAAT ATTATTTTAAATATGCATTTTATTGGTATGTTTCATATTTGTACCAAAAA CCATTTAAGGGTTAAAACCATTTTTCTTAGTTGTTACATCAAAAACTAAT AACTCATTTAATACAAATATACGGACATAGAATTGAATAAAAATTGTGAA ATAAGTAAATATATATTTTTTTGTCATTAAAGAAAGAAATACAAAAAATC GTAACAACAATATATTTTTTTAATAGATTATCATAATAGCGTAAAATTTA TATTTATATATTTCCGACTTTAAAAAAAAGATACATCAGCCACATCATAT TGTTATAAAAATGGAATCTGCATCAATAACCGTATTTCTCCTAAAATGAA GAGCAAATAATAATTAATTATGTAAATAAGTAAACGGGACCTTTACAACA CTGAACCCACCTGTATTTGCGAATAGACCCCAGACGCCATTCCGGATAAT TTACTAGCAACCTTAGTCACACCTTGTCTTACACTTTCTTTAACATCTTC CATATCTGGAGATTGGATACGTGAGCCGGGAGTAACCTCCGTTCTGTTAA AATAATCGGCAGAGGAGATGGAGMTTGATCCTTGGAAGCGGTTGAGATTA GCGTCTTGAGAATCCTAATGGATGAAAAACAGGATTAGATAAATTGCATT ATATTAATAAAATCAATGGAAATCATCCAGTATCACATACTTTCACTACA GATATCTATCTAATCTTATCTCTGTAAAGCTCTTAAGCACAAATCATCAA TGAATGTGACTACTTACATTGCGATCATTGTCAAAAAACATGTCCGATGA AATTGCCTTTGCCTCACCAAATTTTTTGCTAGCTTCCACTGATGACGCAC CATTGTAAGAATGAACTTTAGAGGACGACCTGACAAATATTAATAGATCA TTTGATACTAAAAAGGTTACAAATTAGATCTACCTGTTGGAAGACGAGTT ACTAAAACTATTGCCCCAAGAGCCCTTATCCTTAGTTGTATTTTTTTCCA TTTTTAGTTTTTCAAATTCGCTTTCCCAGGAAATCATGGGATCAGAAAAT CCTTTAAACATATTATCATCATTGTTAGTGTCAATATCATCCATATAGTT GGAAGACCGATCAACAAATAAGTTGTTTTGTTTCTTATACCCAGAAGGCT CCTCTTGAACAATTGTTATCGTATCACTCATTAGCGAGTGGCTGACTCCT GAAGAAGCCCGGAACCCCATTCCGAGACGTTCAACTTGTTCAGCCTTTTT AGGATCAGTTTTTTTCAAATTGTCTTCTTTTTTCTTTTGTTGGACGGATA TATCGTGGTAGGCTAATCTCATGGATGAAGTTATTTCTTCCTCATCGACT TTCTTAGTACTTTCATCTGCCATTTTGGAACGAATTTGATCAGCCATCTC TGCTTCTTTTTCAATTTCTGAGAAGTCCTTCTTGACTTTGGTTGCTCCCA ATCCTCCACCAAGTTTTTTAGCTCCGAGGCCACCCTTTTTAGCAGAGCTC CTCTTGTTCATAATGGTGGATTTTCGTGGAGCTTGCACTGTTGATGCATG GATGCCATCTACATTAGGTCCTTCAGTTGGATCAACTACTTCTTTTTTAA TTGTGTCTGAAAGTTTTGGCTGAAAATTAAGAAAAAGAGACATTATATAT ATTTATATATATAAATAGATTGAAATTATCAGAAAAATTACGAGCTGAAT TACTTATATGATATAAAATAATCTGATGTGCACTTTTTTATACATTTTTT TTTTTTTTTTAAATAAAYAAGTCAAACAAACTTGTGGTTTTGTAGAATAA GTATTAATAACATATACAAACACTTGCAAGTAATACTGAACTTAATATAT CTTACCAATTGACCGAGATATTCTAAATCATTCTACAATTTAAAAGATAA AAAAAAAGATCACTATATAGTTAATGAACTATATCTCATACAAAGATAAA TAAAAATAAAATCCAAATATTGCTTGGATGAAGTAAAAGAAAGATGCATA ATTACAATGTTTTCTGGAAGGGGATTGGAATGATTTTGCGTAAAGAAATC CTCATCCACCTCTTTGTCTTCAGTTTCCTTCTCCGGAGCCACGGCAGCAC TCTCAATGAAGAGTTTGCTTCCATGTATTTTAATGGCTTGAACAGCAGCA TTATGAAGCTTCTCCCGATAGAGTTGTGCCGTGCGAGACTTGTATTTAAC TTGCACATCCGAAGTGAGAGTGTTATACTGTTGAAAGAACGCTTTTGCCC CCGCATTGCCCCCTAATTGCATTTGTCGTAGCTGAACCCATGTCCAATTG CAATCCAGGACGGTGGAGCGCACAAATGTCAAATGCACCCCCAGAGAACG GTGAATTCCAGAGCAGTCGATGCAAATGAAGATCCCGTAGGTCACGGAGC TCCAAGTGGGATTATTGGAGCCGCAATCAAAGCAAACCTACAAGTAGAAA AAGAGGAAGGAGGGATGACGTGGCTCATCACACAATCAAGGGAAGGCTCC CTCTCAAAAATAAGGGTTGGGCAACACTTACTTTATTAGCGGATTGGGAC TTGAGGCGTTTGAAGATATGGGCAATGTCGTTCTTAGAGGGTCCATCCAT GTTGGTAGGAAAATCTACGGGTCCACTTCCCAAGGGATGATTCTATGAAA GCAACGAAGGTGGAGGAAGACGTCAGATAGCTGCTAAAACTTAAAGGGAA AAACACTCACAGAAGGACACAGTCACAGTAAGA
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