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Associated RNAi Experiments
Homology
BLAST of EMLSAG00000000349 vs. C. finmarchicus
Match: gi|592813020|gb|GAXK01141548.1| (TSA: Calanus finmarchicus comp191846_c0_seq1 transcribed RNA sequence) HSP 1 Score: 29.6462 bits (65), Expect = 1.935e+0 Identity = 9/23 (39.13%), Postives = 13/23 (56.52%), Query Frame = 0
Query: 32 GCFSCETLMIPENIDGISFWKHR 54
CF+C+ P+ + ISFW R
Sbjct: 1403 ACFTCQLQFTPQQLSHISFWSDR 1471
BLAST of EMLSAG00000000349 vs. L. salmonis peptides
Match: EMLSAP00000000349 (pep:novel supercontig:LSalAtl2s:LSalAtl2s104:872395:880227:1 gene:EMLSAG00000000349 transcript:EMLSAT00000000349 description:"maker-LSalAtl2s104-augustus-gene-8.14") HSP 1 Score: 217.624 bits (553), Expect = 4.389e-74 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
Query: 1 MTNEVCEISIRRVRMDDHTKIVKLFQASLERGCFSCETLMIPENIDGISFWKHRLGSVRIESILNEPRVRNHEVIVRLNRMEMKEYYERSEMNQEEDEEVLDLFDVL 107
MTNEVCEISIRRVRMDDHTKIVKLFQASLERGCFSCETLMIPENIDGISFWKHRLGSVRIESILNEPRVRNHEVIVRLNRMEMKEYYERSEMNQEEDEEVLDLFDVL
Sbjct: 1 MTNEVCEISIRRVRMDDHTKIVKLFQASLERGCFSCETLMIPENIDGISFWKHRLGSVRIESILNEPRVRNHEVIVRLNRMEMKEYYERSEMNQEEDEEVLDLFDVL 107
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000349 vs. GO
Analysis Date: 2014-04-02 ( Blast vs. GO)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
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BLAST of EMLSAG00000000349 vs. L. salmonis peptides
Analysis Date: 2014-05-10 ( Blastp vs. self)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| EMLSAP00000000349 | 4.389e-74 | 100.00 | pep:novel supercontig:LSalAtl2s:LSalAtl2s104:87239... | [more] |
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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| LSalAtl2s104 | supercontig | LSalAtl2s104:872395..880227 + |
Analyses
This gene is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Logic name | ensemblgenomes |
| Description | maker-LSalAtl2s104-augustus-gene-8.14 |
| Biotype | protein_coding |
| Evidence | IEA |
| Note | Hypothetical protein |
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s104:872395..880227+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >EMLSAG00000000349-683115 ID=EMLSAG00000000349-683115|Name=EMLSAG00000000349|organism=Lepeophtheirus salmonis|type=gene|length=7833bp|location=Sequence derived from alignment at LSalAtl2s104:872395..880227+ (Lepeophtheirus salmonis)
AAAGAGAAAAAAGAAGAGGAAAAAAACGAGCGTGTACTCTTCTACGTGTG
TGTGAGAGTGAAGAGAGAGACGATAAAAAAAATTGGCCGTCATTGGCGCG
CGCATTATTTAAAATCATTTGTTTTTCTTATTTTTTTCCCGGCCGAGGCC
GCCGTTCTAAAGTAGCTATATAATATTTCTTTTCTTTTTTTTTATTTCCA
TCAGTGAATTAAACAAGAAATAGTGATTTTGCCGCTCGGTCCTGAGTCCT
CCTCTCTCTCTCTTCCTCTCCCTACTTCCAATGCCATGACGAACGAAGTC
TGTGAGATCTCTATCCGTCGTGTCCGTATGGATGATCATACCAAGATTGT
CAAACTCTTTCAGGTCAGTTACTGATGATTGAATCCATTTTCTTTCTTTC
TTTTTCTATTCATGATAATAAATAACAATCAATGGCCATACTTTATCTTT
ATAATATAATAATAGGCCTTGATCGACTTTATGTATTTGGCATTTGGTAG
CACTTTTATTTCTCTCTCTTTTCTTATCATATGAATTATGATCAGAATGA
TAAGTAGGAGGATGTCCAGAGTAATGAATTTCTTTTTCGAGACTCATGKC
CGAGCCAAAGTAGACATAATCCAGGCATAGCTCTTCCCTAAGAATGAAAA
TGACTCTCTCACCTCCTTGATGCTAGTTGGCTATACTAGTGGTTGATCCA
CTTCCAGTTATGTTTGATAGTTCATTTTTTCCTTCAATGAGCAAAGGCTA
ACGAGCTAAGTGGCTTCCATTCTCAATTAATAAGCCATCCTTATTTATTT
CATCTTTAATGGTAGTTGATTTTTCTTTCCAATTGGGAATCTATTGTTCA
TTCACAATTTATTGCTTCCTCCCCACATATCAGAAATCTACAATCTCCCC
TCTCTCCCTCCCTTTGATGGAGTCCAATAGGAATCAATTTCTTCTTTCCA
TGTGCAATATACTATTATTATTTTCATCATCTATTCATTTTTAATATATT
GCACACTTTTGTCATGTTTCAACTCCCATTGAGTTATTTTAATCAACTTT
CCCACCACCCGGTGAGTTCCAAATGAAAGCAATTGCTGTTACTTCCTTCA
TTCTCAGCATCATTATTGATAGTTTTGGATTCAAATAGTACCCGTACTAC
AGAAAAAAAAAACCTCTACATTACCAAAGCTCTAACTCTCTAAAAACTAC
TCAAACAATGTTATTTGAAAAACATCCTTAACTCGAATTATCAAAAAGGT
GAAGGAAAAAATTCATATCCAAATTTGTTTGAAGAAGCAATGAAGTACTT
ATCCATTCGTTACCAAGTGAGAAGATATTTTCTATTGCTGTTTGGCAATT
ATATCGAAAAGAAAATATAGAATTGATAGTGGTGCGGCTTAGATGTTAAT
GATAATACAATATGGCAACCTAAATTAATTTAATTTAGGCTTTGCCCTGA
TTATTTAGATGCAACATTAACAATTAATGTCCTACTATGCAAATAAATAT
TTCATAAAATTACCTACATTACTTGATTCATGCTTAAAATACTACCTTAT
TGAAGTGAAGTCAAACTGACTTCTTTGTTGAGCCTATTGTTAGATTTGAT
CCATTCAATGAAAACATATTTATCCTTGTCGAATGCCTTTACTCGAACTC
CATAGTTATAACTCGAATCCAATAATAATTATAATTGATAAGCTTTTATT
ATTATTATGTATAAGGAACATCCCAGTAACCTTCTCTCATCCGTCATTTT
TTCCATCCTTTTTCAGACATTTGACAAAGAAAAATACAAGTTCATTAAAA
CAGGGGAGCACAATAATAACAACAATAACCGTTCCAATCTCTCATTGGCG
GGMCTTCGGYTCGATGAAAGGGGAGGGATATATTTGAATCCTCTACTGGA
TTCACATTCAGCATATTTTAAGTAAGAGAACGTCACGACGGCTCAAGGTT
ACTATTCCTCGTATTTACTACATAATAAGAGATAATTATTTTGAAAAGAA
CCACATTATTTGTACCTTTGATAATAAAAAATAATATTCGTATGTCGTGT
ACATGTTCCAACTTGTGTAAGCAAATTATATAGCCTTCAAGTAAAAAACA
AGATAAAGAAATTTAAGTCCTTTTGATGAAAATAATGCAAAAGTTTCATA
TTCAATGGATAGTTGAACTATTACTGGTGTAATTTTTGACAATTTTGATT
ACTTATTACCAAATAATTATAAGTATTATGTGGCACATTTTAAATTTCAA
ATGGGCATAGTAATTATGCTAGTTGTAAGTATATCATAAATTCTTCATTT
TAATAAACCAAAATGTTATGATAACATTAATAGCTAGTTGTAATGTATAT
ATATATTCTAACTTGTACAATTTCTTTATACAATTTGCAACATGTACAGA
ACATAATATACATATAACTAAGTATATATTTATTTTCCCTCTAGATGCTA
CGTAGCAGAGGATTTAAATTCAAAGATCCTCGTGGGCTACATCCTATTCT
TCAACACCCTGGATGAAAAGGGCAATGATGATCCTGTGGCTGTGATAGAG
GATTTATTTGTCAAGTCTGCATATCGCTGTCGTGGTATTGCAACTCAACT
ATGGAGAAAAGTATTGAAGGTATATATATATTTATTTATCTACTATATAT
GCCCAAAATATACTCAGATTATCTCTGAGTTAAACTTTTACAACATGAAT
TATTTACATATTTTGTGTGTATTATATTTAATAATGGTGCGTAGATTCCT
CGCCTTTCTACGCCCATAGAAGAAATGGTATTAATCCTTCAACATACGGA
GTTTATTATTTACCGTTAAACACAGCTGGTATTTGTACAAAATATGGGGA
GAAGGGAGGGATCTGAAGGGGATCTTTTGTTATCATTATTTTTATTTTTT
GACTATATATACATATGTTGATAAAAAAATATCTTATTACTCCTAACGAC
TATAAGGTTTGCCATGTGATCATTATTATAATCAATGGTCAACTAGCAAA
ATCAATTTAGTTAATAGTTTTTATTTAGTTATGTACTAAATAAATACGGT
TAAATTCTATAAAGCTTTTATCAAAAAAAAAAAATGAACTTTCGTTTAGA
AAAAGAGGTCAAGAATGATTGGAATGGGCTCTACGTTTTGATTCTATACA
TAGATTTTCAAATGATATATAATATAATATGCTGGGGAATCTGTAATTTC
GTATTTTTTGCTTTAGAAGAAGTGTAACAATTATCCAATTTATGGCCCGT
TCTAGTCGAAAACTTGATGCCATCGGTAATCCAACTTCATAATGCCCTTG
TTGCTATTGGCAAAACACTCTGACAACCAATTTTCCCAGGCCTCTATTGA
GGCCAAATTTGTAACCCCTAGCGAATTGGCAATAGATAAGAACAGGTAAT
AGTCACTTGGTGCCATGTCAGGACTGTAGGGTTGATGCATAAGAACTTCT
CATCCGAGCTCCCGGAGCTTCTTGCGCTTCATCAAAGATGTATGCAGCCT
AGCGTTGTCTTGATTATGTCTTGTTGTCTCCTATTCTACAATACTGGCTG
STCCTGTTCGATCGCTAGCTTCAAACGGTTGAGTTGCACACAGTAGAGMG
CAGAAATGAGSGGGGGGGGGGGGGATTGCTCGAACCACATTTCTGCAATA
CAAACCGAAAGAATATCGGCTACATATATATAACAAATTTTCTTGGTCTC
TTTCGACACGTTTTTCGCTTTCAAGTAGTAAAAATGTAAAATATGGCGAA
TTTCTTTCTTTGAGACCTCCATACCCGACACTTGATAATTCACGACTGAA
CTGGCCAAGCGCAATACTGCCCAAAAAGCGTTTATAGTATATACTCACAC
CTTAGCTTATTGTATGTTCCAATGTCACCAATAATGAACAAGATATACTT
AGTTAAAAAAAGGGGGTGGGAAATACGAAATTACTTTTTCCCCAAACTAA
TAGTAATATTTAGATTCTTACATGATAGATTGAATAAGCACGGAGTTAAG
GGTTTGTTAAAATCAGAACTGGTATGAAAAATTTAACCTGCATTTAATCT
GTTCATAACTCTTGCTCCGGTCAAGTTATTAAACCATGAAATTTTAAACA
TAGGCTAACTAGATATTTATATCTAAGGTGACCTTGTAATAAGTATGCAT
GTTTTGGGCCCTCTTCCATGTTCGCGTTTGGTTCACATAATCTCCATATT
TAATTATAGTTTATGTTTGCGATTTCAAAATCCCATCTACCTGCTTATAC
ATGTACTTTATACATAGCTTCTAAAGTTAGTTATAATTTCATCCAAATCT
CGGACATCAGTTGTGTTCAGTACGATATTTTACATTTTTATGTAATTACC
CATATATAAACATTCTATATTTACGTAGATTACTAGATATTTCTTATTTC
CTATTATGTAGGAAAAAAACAAAAAACGTCAAGAGCTAATGTAATTAATT
ATCCTTCATGTTTACAGGCTTCACTGGAGCGTGGATGTTTTTCTTGTGAG
ACACTAATGATCCCTGAAAATATAGATGGTATCTCCTTTTGGAAACATCG
TCTTGGTTCAGTACGGATTGAATCCATTCTTAATGAACCTCGCGTACGAA
ATCATGAAGTTATAGTTAGACTTAATCGAATGGAGATGAAGGAATATTAT
GAAAGGAGTGAAATGAATCAGGAGGAAGATGAAGAAGTCCTGGATTTGTT
TGATGTTTTGTGATACATGGAACCAATTTGAATATTTAATTACTTCTCTG
ACTAACTCTTACTGCCATTCATTCAGTCGAACAAACCTTTTTGTCTGTAT
ACCTGTCGAATTGACTTGTCTATATTCATTTTCTATTTAAGTGATGTGCT
ATGATTGAATAACGAGGTTATTTTTTTTGTTGTTGAATGAAAACAATATT
TAAGACCTTAAATGCTCTATTTATAAGGTTTAAAAAATACTAAAAAGATT
TACCAATAATTTATTTTGTTGCATTTTGTTAACATACGAAATACCCGTGA
CATTGAAAGTACTAATTGCCTATTTAACAGGTGTCAACATCATACTAATA
ACTACTCACAAATACCAACGGGGTAGTTGCAGATGTCAAACTTGTTGAAT
ATTATTTTAAATATGCATTTTATTGGTATGTTTCATATTTGTACCAAAAA
CCATTTAAGGGTTAAAACCATTTTTCTTAGTTGTTACATCAAAAACTAAT
AACTCATTTAATACAAATATACGGACATAGAATTGAATAAAAATTGTGAA
ATAAGTAAATATATATTTTTTTGTCATTAAAGAAAGAAATACAAAAAATC
GTAACAACAATATATTTTTTTAATAGATTATCATAATAGCGTAAAATTTA
TATTTATATATTTCCGACTTTAAAAAAAAGATACATCAGCCACATCATAT
TGTTATAAAAATGGAATCTGCATCAATAACCGTATTTCTCCTAAAATGAA
GAGCAAATAATAATTAATTATGTAAATAAGTAAACGGGACCTTTACAACA
CTGAACCCACCTGTATTTGCGAATAGACCCCAGACGCCATTCCGGATAAT
TTACTAGCAACCTTAGTCACACCTTGTCTTACACTTTCTTTAACATCTTC
CATATCTGGAGATTGGATACGTGAGCCGGGAGTAACCTCCGTTCTGTTAA
AATAATCGGCAGAGGAGATGGAGMTTGATCCTTGGAAGCGGTTGAGATTA
GCGTCTTGAGAATCCTAATGGATGAAAAACAGGATTAGATAAATTGCATT
ATATTAATAAAATCAATGGAAATCATCCAGTATCACATACTTTCACTACA
GATATCTATCTAATCTTATCTCTGTAAAGCTCTTAAGCACAAATCATCAA
TGAATGTGACTACTTACATTGCGATCATTGTCAAAAAACATGTCCGATGA
AATTGCCTTTGCCTCACCAAATTTTTTGCTAGCTTCCACTGATGACGCAC
CATTGTAAGAATGAACTTTAGAGGACGACCTGACAAATATTAATAGATCA
TTTGATACTAAAAAGGTTACAAATTAGATCTACCTGTTGGAAGACGAGTT
ACTAAAACTATTGCCCCAAGAGCCCTTATCCTTAGTTGTATTTTTTTCCA
TTTTTAGTTTTTCAAATTCGCTTTCCCAGGAAATCATGGGATCAGAAAAT
CCTTTAAACATATTATCATCATTGTTAGTGTCAATATCATCCATATAGTT
GGAAGACCGATCAACAAATAAGTTGTTTTGTTTCTTATACCCAGAAGGCT
CCTCTTGAACAATTGTTATCGTATCACTCATTAGCGAGTGGCTGACTCCT
GAAGAAGCCCGGAACCCCATTCCGAGACGTTCAACTTGTTCAGCCTTTTT
AGGATCAGTTTTTTTCAAATTGTCTTCTTTTTTCTTTTGTTGGACGGATA
TATCGTGGTAGGCTAATCTCATGGATGAAGTTATTTCTTCCTCATCGACT
TTCTTAGTACTTTCATCTGCCATTTTGGAACGAATTTGATCAGCCATCTC
TGCTTCTTTTTCAATTTCTGAGAAGTCCTTCTTGACTTTGGTTGCTCCCA
ATCCTCCACCAAGTTTTTTAGCTCCGAGGCCACCCTTTTTAGCAGAGCTC
CTCTTGTTCATAATGGTGGATTTTCGTGGAGCTTGCACTGTTGATGCATG
GATGCCATCTACATTAGGTCCTTCAGTTGGATCAACTACTTCTTTTTTAA
TTGTGTCTGAAAGTTTTGGCTGAAAATTAAGAAAAAGAGACATTATATAT
ATTTATATATATAAATAGATTGAAATTATCAGAAAAATTACGAGCTGAAT
TACTTATATGATATAAAATAATCTGATGTGCACTTTTTTATACATTTTTT
TTTTTTTTTTAAATAAAYAAGTCAAACAAACTTGTGGTTTTGTAGAATAA
GTATTAATAACATATACAAACACTTGCAAGTAATACTGAACTTAATATAT
CTTACCAATTGACCGAGATATTCTAAATCATTCTACAATTTAAAAGATAA
AAAAAAAGATCACTATATAGTTAATGAACTATATCTCATACAAAGATAAA
TAAAAATAAAATCCAAATATTGCTTGGATGAAGTAAAAGAAAGATGCATA
ATTACAATGTTTTCTGGAAGGGGATTGGAATGATTTTGCGTAAAGAAATC
CTCATCCACCTCTTTGTCTTCAGTTTCCTTCTCCGGAGCCACGGCAGCAC
TCTCAATGAAGAGTTTGCTTCCATGTATTTTAATGGCTTGAACAGCAGCA
TTATGAAGCTTCTCCCGATAGAGTTGTGCCGTGCGAGACTTGTATTTAAC
TTGCACATCCGAAGTGAGAGTGTTATACTGTTGAAAGAACGCTTTTGCCC
CCGCATTGCCCCCTAATTGCATTTGTCGTAGCTGAACCCATGTCCAATTG
CAATCCAGGACGGTGGAGCGCACAAATGTCAAATGCACCCCCAGAGAACG
GTGAATTCCAGAGCAGTCGATGCAAATGAAGATCCCGTAGGTCACGGAGC
TCCAAGTGGGATTATTGGAGCCGCAATCAAAGCAAACCTACAAGTAGAAA
AAGAGGAAGGAGGGATGACGTGGCTCATCACACAATCAAGGGAAGGCTCC
CTCTCAAAAATAAGGGTTGGGCAACACTTACTTTATTAGCGGATTGGGAC
TTGAGGCGTTTGAAGATATGGGCAATGTCGTTCTTAGAGGGTCCATCCAT
GTTGGTAGGAAAATCTACGGGTCCACTTCCCAAGGGATGATTCTATGAAA
GCAACGAAGGTGGAGGAAGACGTCAGATAGCTGCTAAAACTTAAAGGGAA
AAACACTCACAGAAGGACACAGTCACAGTAAGA back to top
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