EMLSAG00000000359, EMLSAG00000000359-683125 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000359
Unique NameEMLSAG00000000359-683125
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000359 vs. C. finmarchicus
Match: gi|592852220|gb|GAXK01105324.1| (TSA: Calanus finmarchicus comp185913_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 46.9802 bits (110), Expect = 3.282e-6
Identity = 33/108 (30.56%), Postives = 58/108 (53.70%), Query Frame = 0 
Query:    1 MEVSNNSQLLKRVRSDRCL--CPLCYNPRATFYCYECIKFGDFSHSNPLKNEILAEKRVXXXXXXXXXXXXYQTIREKLSESNEYFILSENKRLVELRIRYLKEIIAE 106
            ++ + NS++ K + +  CL  CPLC + R+ FYC  C+  GDF HS+    E  +EK ++L     + ++    I  + S +     L E+ +L   +I+YLK +I +
Sbjct:  177 LQRNGNSKICKPM-TQSCLPQCPLCSSKRSNFYCATCVISGDFVHSSTKLFERFSEKNLRLFALQREINESKSAIELRTSRNWTAQQLKEDIKLSRTKIKYLKHVIKQ 497
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BLAST of EMLSAG00000000359 vs. C. finmarchicus
Match: gi|592852221|gb|GAXK01105323.1| (TSA: Calanus finmarchicus comp185913_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 46.9802 bits (110), Expect = 3.282e-6
Identity = 33/108 (30.56%), Postives = 58/108 (53.70%), Query Frame = 0 
Query:    1 MEVSNNSQLLKRVRSDRCL--CPLCYNPRATFYCYECIKFGDFSHSNPLKNEILAEKRVXXXXXXXXXXXXYQTIREKLSESNEYFILSENKRLVELRIRYLKEIIAE 106
            ++ + NS++ K + +  CL  CPLC + R+ FYC  C+  GDF HS+    E  +EK ++L     + ++    I  + S +     L E+ +L   +I+YLK +I +
Sbjct:  177 LQRNGNSKICKPM-TQSCLPQCPLCSSKRSNFYCATCVISGDFVHSSTKLFERFSEKNLRLFALQREINESKSAIELRTSRNWTAQQLKEDIKLSRTKIKYLKHVIKQ 497
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BLAST of EMLSAG00000000359 vs. C. finmarchicus
Match: gi|592852222|gb|GAXK01105322.1| (TSA: Calanus finmarchicus comp185913_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 46.9802 bits (110), Expect = 3.392e-6
Identity = 33/108 (30.56%), Postives = 58/108 (53.70%), Query Frame = 0 
Query:    1 MEVSNNSQLLKRVRSDRCL--CPLCYNPRATFYCYECIKFGDFSHSNPLKNEILAEKRVXXXXXXXXXXXXYQTIREKLSESNEYFILSENKRLVELRIRYLKEIIAE 106
            ++ + NS++ K + +  CL  CPLC + R+ FYC  C+  GDF HS+    E  +EK ++L     + ++    I  + S +     L E+ +L   +I+YLK +I +
Sbjct:  177 LQRNGNSKICKPM-TQSCLPQCPLCSSKRSNFYCATCVISGDFVHSSTKLFERFSEKNLRLFALQREINESKSAIELRTSRNWTAQQLKEDIKLSRTKIKYLKHVIKQ 497
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BLAST of EMLSAG00000000359 vs. C. finmarchicus
Match: gi|592831516|gb|GAXK01126028.1| (TSA: Calanus finmarchicus comp605470_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 3.546e-1
Identity = 14/36 (38.89%), Postives = 20/36 (55.56%), Query Frame = 0 
Query:   13 VRSDRCLCPLCYNPRATFYCYECIKFGDF--SHSNP 46
             R++   CPLC    + FYC +C+  G F  S S+P
Sbjct:   58 ARANLVHCPLCSLRMSKFYCVDCVISGHFIPSRSDP 165
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BLAST of EMLSAG00000000359 vs. C. finmarchicus
Match: gi|592831515|gb|GAXK01126029.1| (TSA: Calanus finmarchicus comp605470_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 3.618e-1
Identity = 14/36 (38.89%), Postives = 20/36 (55.56%), Query Frame = 0 
Query:   13 VRSDRCLCPLCYNPRATFYCYECIKFGDF--SHSNP 46
             R++   CPLC    + FYC +C+  G F  S S+P
Sbjct:   58 ARANLVHCPLCSLRMSKFYCVDCVISGHFIPSRSDP 165
[Close]
BLAST of EMLSAG00000000359 vs. C. finmarchicus
Match: gi|592831517|gb|GAXK01126027.1| (TSA: Calanus finmarchicus comp605470_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 3.780e-1
Identity = 14/36 (38.89%), Postives = 20/36 (55.56%), Query Frame = 0 
Query:   13 VRSDRCLCPLCYNPRATFYCYECIKFGDF--SHSNP 46
             R++   CPLC    + FYC +C+  G F  S S+P
Sbjct:   58 ARANLVHCPLCSLRMSKFYCVDCVISGHFIPSRSDP 165
[Close]
BLAST of EMLSAG00000000359 vs. C. finmarchicus
Match: gi|592831518|gb|GAXK01126026.1| (TSA: Calanus finmarchicus comp605470_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 3.892e-1
Identity = 14/36 (38.89%), Postives = 20/36 (55.56%), Query Frame = 0 
Query:   13 VRSDRCLCPLCYNPRATFYCYECIKFGDF--SHSNP 46
             R++   CPLC    + FYC +C+  G F  S S+P
Sbjct:   58 ARANLVHCPLCSLRMSKFYCVDCVISGHFIPSRSDP 165
[Close]
BLAST of EMLSAG00000000359 vs. C. finmarchicus
Match: gi|592791044|gb|GAXK01163524.1| (TSA: Calanus finmarchicus comp1918931_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 3.462e+0
Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 0 
Query:   73 IREKLSESNEYFILSENKRLVELRIR 98
            I  K+ ESN ++ILSEN   VE++IR
Sbjct:  812 IVRKIKESNLHYILSENAFSVEIKIR 889
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BLAST of EMLSAG00000000359 vs. C. finmarchicus
Match: gi|592791043|gb|GAXK01163525.1| (TSA: Calanus finmarchicus comp1918931_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 3.591e+0
Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 0 
Query:   73 IREKLSESNEYFILSENKRLVELRIR 98
            I  K+ ESN ++ILSEN   VE++IR
Sbjct:  796 IVRKIKESNLHYILSENAFSVEIKIR 873
[Close]
BLAST of EMLSAG00000000359 vs. C. finmarchicus
Match: gi|592831513|gb|GAXK01126031.1| (TSA: Calanus finmarchicus comp605470_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 7.295e+0
Identity = 22/77 (28.57%), Postives = 36/77 (46.75%), Query Frame = 0 
Query:   30 FYCYECIKFGDFSH--SNPLKNEILAEKRVXXXXXXXXXXXXYQTIREKLSESNEYFILSENKRLVELRIRYLKEII 104
            FYC +C+  G F H  S+ L  E  +EK ++L        +    I +K        I+ E   L ++R +YL+E +
Sbjct:    2 FYCVDCVTNGHFIHSRSDLLCYETFSEKSIRLFALQKDILETKNEIEDKNKIVWRTEIIREEIELSKIRAKYLREAV 232
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BLAST of EMLSAG00000000359 vs. L. salmonis peptides
Match: EMLSAP00000000359 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1053:121750:122179:-1 gene:EMLSAG00000000359 transcript:EMLSAT00000000359 description:"snap_masked-LSalAtl2s1053-processed-gene-0.16")

HSP 1 Score: 218.779 bits (556), Expect = 1.918e-74
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 
Query:    1 MEVSNNSQLLKRVRSDRCLCPLCYNPRATFYCYECIKFGDFSHSNPLKNEILAEKRVKLKGFSLKSSKFYQTIREKLSESNEYFILSENKRLVELRIRYLKEIIAEKSN 109
            MEVSNNSQLLKRVRSDRCLCPLCYNPRATFYCYECIKFGDFSHSNPLKNEILAEKRVKLKGFSLKSSKFYQTIREKLSESNEYFILSENKRLVELRIRYLKEIIAEKSN
Sbjct:    1 MEVSNNSQLLKRVRSDRCLCPLCYNPRATFYCYECIKFGDFSHSNPLKNEILAEKRVKLKGFSLKSSKFYQTIREKLSESNEYFILSENKRLVELRIRYLKEIIAEKSN 109
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BLAST of EMLSAG00000000359 vs. Select Arthropod Genomes
Match: XP_396142.4 (PREDICTED: beclin 1-associated autophagy-related key regulator [Apis mellifera])

HSP 1 Score: 50.8322 bits (120), Expect = 7.544e-8
Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 0 
Query:   20 CPLCYNPRATFYCYECIKFGDFSHSNPLKNEILAEKRVKL 59
            CPLC+N R  FYC +CI+ GDF HS  + +E  A+K+++L
Sbjct:   36 CPLCHNSRRIFYCRQCIQNGDFIHSTSVYSERFADKQLRL 75
[Close]
BLAST of EMLSAG00000000359 vs. nr
Match: gi|926645239|ref|XP_013788913.1| (PREDICTED: beclin 1-associated autophagy-related key regulator-like [Limulus polyphemus])

HSP 1 Score: 55.4546 bits (132), Expect = 9.266e-7
Identity = 34/97 (35.05%), Postives = 57/97 (58.76%), Query Frame = 0 
Query:   20 CPLCYNPRATFYCYECIKFGDFSHSNPLKNEILAEKRVKLKGFSLKSSKFYQTIREKLSESNEYFILSENKR-------LVELRIRYLKEII-AEKS 108
            CPLC++ +  F+C +CI+ GDF+HS     E  AEK++KL   S + S   ++ +++ S  + +  L+  K+       L+EL ++  KEI+ AEKS
Sbjct:   38 CPLCFHSKRAFFCQDCIRNGDFTHSKSRYPERYAEKKLKLFKGSQEKSVLLESCKDRFSSQSRFRHLASKKQQILRRIELLELSLKENKEILQAEKS 134
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000359 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000359 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 11
Match NameE-valueIdentityDescription
gi|592852220|gb|GAXK01105324.1|3.282e-630.56TSA: Calanus finmarchicus comp185913_c1_seq3 trans... [more]
gi|592852221|gb|GAXK01105323.1|3.282e-630.56TSA: Calanus finmarchicus comp185913_c1_seq2 trans... [more]
gi|592852222|gb|GAXK01105322.1|3.392e-630.56TSA: Calanus finmarchicus comp185913_c1_seq1 trans... [more]
gi|592831516|gb|GAXK01126028.1|3.546e-138.89TSA: Calanus finmarchicus comp605470_c0_seq3 trans... [more]
gi|592831515|gb|GAXK01126029.1|3.618e-138.89TSA: Calanus finmarchicus comp605470_c0_seq4 trans... [more]
gi|592831517|gb|GAXK01126027.1|3.780e-138.89TSA: Calanus finmarchicus comp605470_c0_seq2 trans... [more]
gi|592831518|gb|GAXK01126026.1|3.892e-138.89TSA: Calanus finmarchicus comp605470_c0_seq1 trans... [more]
gi|592791044|gb|GAXK01163524.1|3.462e+053.85TSA: Calanus finmarchicus comp1918931_c0_seq1 tran... [more]
gi|592791043|gb|GAXK01163525.1|3.591e+053.85TSA: Calanus finmarchicus comp1918931_c0_seq2 tran... [more]
gi|592831513|gb|GAXK01126031.1|7.295e+028.57TSA: Calanus finmarchicus comp605470_c0_seq6 trans... [more]

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BLAST of EMLSAG00000000359 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000003591.918e-74100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1053:1217... [more]
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BLAST of EMLSAG00000000359 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000359 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 1
Match NameE-valueIdentityDescription
XP_396142.47.544e-850.00PREDICTED: beclin 1-associated autophagy-related k... [more]
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BLAST of EMLSAG00000000359 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1
Match NameE-valueIdentityDescription
gi|926645239|ref|XP_013788913.1|9.266e-735.05PREDICTED: beclin 1-associated autophagy-related k... [more]
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BLAST of EMLSAG00000000359 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1053supercontigLSalAtl2s1053:121750..122179 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1053-processed-gene-0.16
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000359 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000359EMLSAT00000000359-696206Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1053:121750..122179-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000359-683125 ID=EMLSAG00000000359-683125|Name=EMLSAG00000000359|organism=Lepeophtheirus salmonis|type=gene|length=430bp|location=Sequence derived from alignment at LSalAtl2s1053:121750..122179- (Lepeophtheirus salmonis)
ATGGAAGTATCCAATAATTCACAACTGTTAAAACGTGTTCGAAGTGATCG
ATGTCTCTGTCCTCTCTGCTACAATCCAAGAGCCACCTTCTATTGTTATG
AATGTATTAAATTCGGAGATTTTTCTCATTCAAATCCCTTAAAAAATGAG
ATTTTAGCGGAGAAAAGAGTCAAGCTGAAGGGATTCTCTCTCAAATCATC
CAAATTTTATCAAACCATTAGGGAAAAGTTGTCTGAAAGTAACGAGTACT
TTATTCTATCCGAGAATAAACGCCTTGTGGAACTACGGATTCGTTATTTG
AAGGAAATCATTGCTGAAAAAAGGTATTTTCAAACTTTCATTGGACTTTT
TTGTTTGTTTGACGTTTGTCCTTGAAAAGTTTATTAATTATTTGGGCCTT
TCTCTATTTCTAAATGTATTTAGTAATTGA
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