EMLSAG00000000372, EMLSAG00000000372-683138 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000372
Unique NameEMLSAG00000000372-683138
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000372 vs. C. finmarchicus
Match: gi|592834543|gb|GAXK01123001.1| (TSA: Calanus finmarchicus comp4158813_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 45.4394 bits (106), Expect = 3.534e-6
Identity = 20/55 (36.36%), Postives = 32/55 (58.18%), Query Frame = 0 
Query:   13 SAKWFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSG 67
            S  + S  +L+++Y  +I+KC D+ CC  +RTN +  FP R  P  +  K+  SG
Sbjct:  491 SPAFRSRHILETQYMTIILKCDDRQCCSAMRTNVDMFFPDRRVPALIPVKFSPSG 655
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BLAST of EMLSAG00000000372 vs. C. finmarchicus
Match: gi|592765207|gb|GAXK01189361.1| (TSA: Calanus finmarchicus comp1214061_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.5874 bits (96), Expect = 1.155e-4
Identity = 16/47 (34.04%), Postives = 28/47 (59.57%), Query Frame = 0 
Query:   21 VLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSG 67
            V +++Y  + +KC D++CC  LRT  +  FP+R  P  +  K+  +G
Sbjct: 1887 VFETQYMSVFLKCDDRSCCSALRTMVDSFFPHRRIPALIPVKFSVAG 2027
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BLAST of EMLSAG00000000372 vs. C. finmarchicus
Match: gi|592838383|gb|GAXK01119161.1| (TSA: Calanus finmarchicus comp5898468_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 3.630e-2
Identity = 21/71 (29.58%), Postives = 31/71 (43.66%), Query Frame = 0 
Query:    7 ETFEEPSAK----------WFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSG 67
            E  EEPS            + S  +L++RY  + +KC D  CC   RT+    FP R  P  +   +  +G
Sbjct:  509 EFIEEPSKDETLNYTVTPYYRSRHILETRYMTIYLKCDDLACCSKPRTSVASFFPGRRIPALIPIHHTPTG 721
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BLAST of EMLSAG00000000372 vs. C. finmarchicus
Match: gi|592833983|gb|GAXK01123561.1| (TSA: Calanus finmarchicus comp7076450_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 8.754e-2
Identity = 16/55 (29.09%), Postives = 28/55 (50.91%), Query Frame = 0 
Query:   13 SAKWFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSG 67
            SA + S  ++Q++Y  +++KC D +CC   +T     F  R  P  +  K+   G
Sbjct:  253 SAFYKSRHIIQTQYMTIVLKCDDLSCCTKPKTQIMSFFLGRRLPALIPIKFSDCG 417
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BLAST of EMLSAG00000000372 vs. C. finmarchicus
Match: gi|592845058|gb|GAXK01112486.1| (TSA: Calanus finmarchicus comp197699_c1_seq5 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.375e+0
Identity = 11/33 (33.33%), Postives = 19/33 (57.58%), Query Frame = 0 
Query:   10 EEPSAKWFSMLVLQSRYALLIVKCFDKNCCEPL 42
            ++P+  WF MLVL+      +V     +CC+P+
Sbjct:  206 QQPNKIWFIMLVLKM*LYGNLVNILQSSCCQPM 304
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BLAST of EMLSAG00000000372 vs. C. finmarchicus
Match: gi|592845056|gb|GAXK01112488.1| (TSA: Calanus finmarchicus comp197699_c1_seq7 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.508e+0
Identity = 11/33 (33.33%), Postives = 19/33 (57.58%), Query Frame = 0 
Query:   10 EEPSAKWFSMLVLQSRYALLIVKCFDKNCCEPL 42
            ++P+  WF MLVL+      +V     +CC+P+
Sbjct:  206 QQPNKIWFIMLVLKM*LYGNLVNILQSSCCQPM 304
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BLAST of EMLSAG00000000372 vs. C. finmarchicus
Match: gi|592758289|gb|GAXK01196124.1| (TSA: Calanus finmarchicus comp701035_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 2.892e+0
Identity = 12/31 (38.71%), Postives = 15/31 (48.39%), Query Frame = 0 
Query:   26 YALLIVKCFDKNCCEPLRTNWNRVFPYRFFP 56
            Y  L +K   KN C P+ +  NRV     FP
Sbjct:  133 YHFLFLKLKKKNTCHPMNSKRNRVRAVEHFP 225
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BLAST of EMLSAG00000000372 vs. C. finmarchicus
Match: gi|592894604|gb|GAXK01063771.1| (TSA: Calanus finmarchicus comp3585810_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 3.524e+0
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 0 
Query:   38 CCEPLRTNWNRVFP 51
            CCEPLR + +R FP
Sbjct:  253 CCEPLRRDHHRTFP 294
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BLAST of EMLSAG00000000372 vs. C. finmarchicus
Match: gi|592820539|gb|GAXK01134029.1| (TSA: Calanus finmarchicus comp1947440_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.137e+0
Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = 0 
Query:   46 WNRVFPYRFFPTPLVYKYGTSG 67
            W+ +   RF P P +Y++GT G
Sbjct:  677 WHTIICRRFLPFPCLYRHGTHG 742
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BLAST of EMLSAG00000000372 vs. C. finmarchicus
Match: gi|592820540|gb|GAXK01134028.1| (TSA: Calanus finmarchicus comp1947440_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.435e+0
Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = 0 
Query:   46 WNRVFPYRFFPTPLVYKYGTSG 67
            W+ +   RF P P +Y++GT G
Sbjct:  677 WHTIICRRFLPFPCLYRHGTHG 742
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BLAST of EMLSAG00000000372 vs. L. salmonis peptides
Match: EMLSAP00000000372 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1056:392725:394192:1 gene:EMLSAG00000000372 transcript:EMLSAT00000000372 description:"maker-LSalAtl2s1056-snap-gene-2.22")

HSP 1 Score: 143.665 bits (361), Expect = 3.882e-46
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 
Query:    1 MLKDCRETFEEPSAKWFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSGL 68
            MLKDCRETFEEPSAKWFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSGL
Sbjct:    1 MLKDCRETFEEPSAKWFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSGL 68
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BLAST of EMLSAG00000000372 vs. Select Arthropod Genomes
Match: EFX81466.1 (hypothetical protein DAPPUDRAFT_317650 [Daphnia pulex])

HSP 1 Score: 50.447 bits (119), Expect = 3.066e-8
Identity = 24/62 (38.71%), Postives = 30/62 (48.39%), Query Frame = 0 
Query:    7 ETFEEPSAKWFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSGL 68
            E      +KWFS  V  S+Y   IVKC D  CC   R+++  V P RF P P+       GL
Sbjct:  568 ENLVTKDSKWFSQHVRTSQYFTQIVKCLDVTCCAKPRSSYFTVVPGRFIPPPIPIYQSADGL 629
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BLAST of EMLSAG00000000372 vs. nr
Match: gi|828225853|ref|XP_012563449.1| (PREDICTED: uncharacterized protein LOC105848061 [Hydra vulgaris])

HSP 1 Score: 63.5438 bits (153), Expect = 2.722e-10
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 0 
Query:   12 PSAKWFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSG 67
            P   W      QSRY+L IVKC +++CC P  TNW + FP RF P P +Y+Y  +G
Sbjct:  360 PDPVWVDKHCQQSRYSLQIVKCQEESCCTPFETNWLKNFPQRFIPFPAIYEYCENG 415
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BLAST of EMLSAG00000000372 vs. nr
Match: gi|828227748|ref|XP_012564059.1| (PREDICTED: uncharacterized protein LOC105848481, partial [Hydra vulgaris])

HSP 1 Score: 60.8474 bits (146), Expect = 2.913e-9
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 0 
Query:   12 PSAKWFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSG 67
            P   W      QSRY+L IVKC +++CC P  TNW + FP RF P P +Y+Y  +G
Sbjct:  408 PDPVWVDKHCQQSRYSLQIVKCQEESCCTPFETNWLKNFPQRFIPFPAIYEYCENG 463
[Close]
BLAST of EMLSAG00000000372 vs. nr
Match: gi|675864614|ref|XP_009017867.1| (hypothetical protein HELRODRAFT_172961 [Helobdella robusta] >gi|555700698|gb|ESO03931.1| hypothetical protein HELRODRAFT_172961 [Helobdella robusta])

HSP 1 Score: 57.7658 bits (138), Expect = 3.025e-8
Identity = 23/60 (38.33%), Postives = 36/60 (60.00%), Query Frame = 0 
Query:    9 FEEPSAKWFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSGL 68
             + P   WF+  V QS+Y L I+KC  + CC   R+++N +FP+RF P P+ Y    +G+
Sbjct:  374 LQAPPNDWFASHVRQSQYCLHIIKCNTEACCGLKRSHFNEIFPHRFLPPPIPYIITKTGI 433
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BLAST of EMLSAG00000000372 vs. nr
Match: gi|170067470|ref|XP_001868493.1| (conserved hypothetical protein [Culex quinquefasciatus] >gi|167863617|gb|EDS27000.1| conserved hypothetical protein [Culex quinquefasciatus])

HSP 1 Score: 57.7658 bits (138), Expect = 3.155e-8
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 0 
Query:    7 ETFEEPSAKWFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSGL 68
            E+ E     WFS  V  S+Y L IVKC +++CC PLR++ + V P RF P P+   + + GL
Sbjct:  660 ESLECRDQCWFSNHVRTSQYMLQIVKCDNRSCCSPLRSSLSTVLPGRFLPPPIPLIHSSDGL 721
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000372 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000372 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 13
Match NameE-valueIdentityDescription
gi|592834543|gb|GAXK01123001.1|3.534e-636.36TSA: Calanus finmarchicus comp4158813_c0_seq1 tran... [more]
gi|592765207|gb|GAXK01189361.1|1.155e-434.04TSA: Calanus finmarchicus comp1214061_c0_seq1 tran... [more]
gi|592838383|gb|GAXK01119161.1|3.630e-229.58TSA: Calanus finmarchicus comp5898468_c0_seq1 tran... [more]
gi|592833983|gb|GAXK01123561.1|8.754e-229.09TSA: Calanus finmarchicus comp7076450_c0_seq1 tran... [more]
gi|592845058|gb|GAXK01112486.1|2.375e+033.33TSA: Calanus finmarchicus comp197699_c1_seq5 trans... [more]
gi|592845056|gb|GAXK01112488.1|2.508e+033.33TSA: Calanus finmarchicus comp197699_c1_seq7 trans... [more]
gi|592758289|gb|GAXK01196124.1|2.892e+038.71TSA: Calanus finmarchicus comp701035_c0_seq1 trans... [more]
gi|592894604|gb|GAXK01063771.1|3.524e+064.29TSA: Calanus finmarchicus comp3585810_c0_seq1 tran... [more]
gi|592820539|gb|GAXK01134029.1|5.137e+040.91TSA: Calanus finmarchicus comp1947440_c0_seq2 tran... [more]
gi|592820540|gb|GAXK01134028.1|5.435e+040.91TSA: Calanus finmarchicus comp1947440_c0_seq1 tran... [more]

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BLAST of EMLSAG00000000372 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000003723.882e-46100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1056:3927... [more]
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BLAST of EMLSAG00000000372 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000372 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 1
Match NameE-valueIdentityDescription
EFX81466.13.066e-838.71hypothetical protein DAPPUDRAFT_317650 [Daphnia pu... [more]
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BLAST of EMLSAG00000000372 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 4
Match NameE-valueIdentityDescription
gi|828225853|ref|XP_012563449.1|2.722e-1046.43PREDICTED: uncharacterized protein LOC105848061 [H... [more]
gi|828227748|ref|XP_012564059.1|2.913e-946.43PREDICTED: uncharacterized protein LOC105848481, p... [more]
gi|675864614|ref|XP_009017867.1|3.025e-838.33hypothetical protein HELRODRAFT_172961 [Helobdella... [more]
gi|170067470|ref|XP_001868493.1|3.155e-841.94conserved hypothetical protein [Culex quinquefasci... [more]
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BLAST of EMLSAG00000000372 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1056supercontigLSalAtl2s1056:392725..394192 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1056-snap-gene-2.22
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000372 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000372EMLSAT00000000372-696219Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1056:392725..394192+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000372-683138 ID=EMLSAG00000000372-683138|Name=EMLSAG00000000372|organism=Lepeophtheirus salmonis|type=gene|length=1468bp|location=Sequence derived from alignment at LSalAtl2s1056:392725..394192+ (Lepeophtheirus salmonis)
TAAACATTCAAACTCTTCATGATTTGAATAATGAACTTCAGCTTTCATTT
GTCAGGAAGTTTTACTTATCTAAGAATATTATCTCGTAGAGCAAATACAC
TAGAGGGCAATCGTCATGCTCAAAGACTGCCGTGAAACTTTTGAGGTAAC
CTTATATTTATTAATTAAGTAAAATATTATTAATTTTAGAATTAAGACAC
TCAGCATTAGAACTATCATTCAAATTTCATACGATTTTTTTAAATAACTC
GACTTATCACTATTATTATTTTAGACCTGAGAATAAATTTTGAGGAACAG
CAATACTGACAGAATGTTCGCAAAATCTTACACTGATGATATGAAGGACC
TTGATCCACTATTTGGACCTGACGCTTTTAATTATTTCTCTAACGATGAT
ATAGCTAGAGTACCAAGGCTCCGATTTTAATGAGTCTTAAATATAATGCC
AGACTCTCGGATCATAACTTTGCAATCGGCACAAGACATAAACTGATTCC
ATCGATTTATGCTGAGTGTAAGGTCTTGGAAAATGGAAAAGTGTCCTATT
CGGCAGAAACCTTTATTAGAGTCAGAAGTGGAAAATATGATTTCTCGACT
GCCTTTGCACATGCTTTTGACTTAAGGAACCTTTTAATATCGGGATCAAT
AAAAAGAAAACCCATTTTGGTTGTTGAAGCTGATTGGGCTCAGGATGTAA
GTCGAAACTTCTACCTATTAAACTATCTTTATTTCTATTGACTTTATGTC
TTAGAATCACAAAATGGCAACAAAAAAAGAAGTGATTCTGAATAATATTT
TTTGAAGTAATTTTTTTCTCAAATTAGACGTTAGCAAATATAATTACCCC
AACTAATAATCTACACATGATGACTATTAAATTGCCTAATATGATCACTT
AGATCAATTATCTTATAGTATCAAATTTTATATTTGCCAATATATTTTTT
CTAGGAGGCTCCAAGGAATGTAAAGCCATTAGATTGTTCTGTCAGTTTGT
TCAAAGAGCTAAAGCTTGATGCTTTGATACATGGAGTCAATGCTGCTGGA
CTCTCCGCTTTTAACCAAGTAGAAAGGGGGATGTCAAAATTAAGTCATAA
CTTATCTGGTATAATTCTTACCCATGGCACTTAGGGTCCTCATTTGAATG
AATCTGGAAAAACTATCACCCCTGAACTGGAGGGAGAAAAAAAATTTCGC
TGCATCTTAAGCTCTCTCTGAAGTCACTGTCATTGATAATTATTTAGTTG
ACTGTTTACCACTTTAAAAAGTCTCTAAATTTATTCCTGAGGAACCAAGT
GCTAAGTGGTTTTCAATGCTTGTATTACAATCGCGTTATGCATTGCTAAT
AGTTAAATGCTTCGACAAAAATTGCTGTGAGCCTCTTCGGACCAATTGGA
ATCGTGTTTTCCCCTACAGATTTTTCCCGACTCCTTTAGTCTACAAGTAT
GGTACAAGTGGATTATAA
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