EMLSAG00000000376, EMLSAG00000000376-683142 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000376
Unique NameEMLSAG00000000376-683142
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000376 vs. C. finmarchicus
Match: gi|592933879|gb|GAXK01024674.1| (TSA: Calanus finmarchicus comp6686493_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 2.555e+0
Identity = 10/21 (47.62%), Postives = 12/21 (57.14%), Query Frame = 0 
Query:    8 GCLYSRKKCNSAWRIEQELTR 28
            GC Y    CN  +R E+EL R
Sbjct:  171 GCAYYCDPCNETFRYEEELKR 233
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BLAST of EMLSAG00000000376 vs. C. finmarchicus
Match: gi|592852217|gb|GAXK01105327.1| (TSA: Calanus finmarchicus comp185866_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 4.924e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:    2 LLAMYYGCLYSRKKCNSAWRIEQELTR 28
            LL +  GCL + +KC ++W   Q L R
Sbjct:  457 LLVLPTGCLKANQKC*NSWIQSQHLPR 537
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BLAST of EMLSAG00000000376 vs. C. finmarchicus
Match: gi|592765275|gb|GAXK01189293.1| (TSA: Calanus finmarchicus comp857185_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 25.7942 bits (55), Expect = 5.775e+0
Identity = 9/26 (34.62%), Postives = 15/26 (57.69%), Query Frame = 0 
Query:    1 MLLAMYYGCLYSRKKCNSAWRIEQEL 26
            M L + +G L++   CN+ WR+   L
Sbjct:  489 MQLMVNFGILFNNVNCNTNWRVSTGL 566
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BLAST of EMLSAG00000000376 vs. C. finmarchicus
Match: gi|592765276|gb|GAXK01189292.1| (TSA: Calanus finmarchicus comp857185_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 25.7942 bits (55), Expect = 6.180e+0
Identity = 9/26 (34.62%), Postives = 15/26 (57.69%), Query Frame = 0 
Query:    1 MLLAMYYGCLYSRKKCNSAWRIEQEL 26
            M L + +G L++   CN+ WR+   L
Sbjct:  489 MQLMVNFGILFNNVNCNTNWRVSTGL 566
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BLAST of EMLSAG00000000376 vs. C. finmarchicus
Match: gi|592887786|gb|GAXK01070589.1| (TSA: Calanus finmarchicus comp215363_c5_seq13 transcribed RNA sequence)

HSP 1 Score: 25.0238 bits (53), Expect = 6.366e+0
Identity = 9/22 (40.91%), Postives = 12/22 (54.55%), Query Frame = 0 
Query:    3 LAMYYGCLYSRKKCNSAWRIEQ 24
            +  Y+GC YS + CN  W   Q
Sbjct:  234 VPWYFGCRYSCQICNKVWHYPQ 299
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BLAST of EMLSAG00000000376 vs. C. finmarchicus
Match: gi|592887787|gb|GAXK01070588.1| (TSA: Calanus finmarchicus comp215363_c5_seq12 transcribed RNA sequence)

HSP 1 Score: 25.0238 bits (53), Expect = 6.366e+0
Identity = 9/22 (40.91%), Postives = 12/22 (54.55%), Query Frame = 0 
Query:    3 LAMYYGCLYSRKKCNSAWRIEQ 24
            +  Y+GC YS + CN  W   Q
Sbjct:  234 VPWYFGCRYSCQICNKVWHYPQ 299
[Close]
BLAST of EMLSAG00000000376 vs. C. finmarchicus
Match: gi|592887785|gb|GAXK01070590.1| (TSA: Calanus finmarchicus comp215363_c5_seq14 transcribed RNA sequence)

HSP 1 Score: 25.0238 bits (53), Expect = 6.627e+0
Identity = 9/22 (40.91%), Postives = 12/22 (54.55%), Query Frame = 0 
Query:    3 LAMYYGCLYSRKKCNSAWRIEQ 24
            +  Y+GC YS + CN  W   Q
Sbjct:  235 VPWYFGCRYSCQICNKVWHYPQ 300
[Close]
BLAST of EMLSAG00000000376 vs. C. finmarchicus
Match: gi|592887800|gb|GAXK01070575.1| (TSA: Calanus finmarchicus comp215363_c3_seq11 transcribed RNA sequence)

HSP 1 Score: 25.0238 bits (53), Expect = 6.627e+0
Identity = 9/22 (40.91%), Postives = 12/22 (54.55%), Query Frame = 0 
Query:    3 LAMYYGCLYSRKKCNSAWRIEQ 24
            +  Y+GC YS + CN  W   Q
Sbjct:   31 VPWYFGCRYSCQICNKVWHYPQ 96
[Close]
BLAST of EMLSAG00000000376 vs. C. finmarchicus
Match: gi|592887790|gb|GAXK01070585.1| (TSA: Calanus finmarchicus comp215363_c5_seq9 transcribed RNA sequence)

HSP 1 Score: 25.409 bits (54), Expect = 7.257e+0
Identity = 9/19 (47.37%), Postives = 11/19 (57.89%), Query Frame = 0 
Query:    6 YYGCLYSRKKCNSAWRIEQ 24
            Y+GC YS + CN  W   Q
Sbjct:  462 YFGCRYSCQICNKVWHYPQ 518
[Close]
BLAST of EMLSAG00000000376 vs. C. finmarchicus
Match: gi|592887791|gb|GAXK01070584.1| (TSA: Calanus finmarchicus comp215363_c5_seq8 transcribed RNA sequence)

HSP 1 Score: 25.409 bits (54), Expect = 7.327e+0
Identity = 9/19 (47.37%), Postives = 11/19 (57.89%), Query Frame = 0 
Query:    6 YYGCLYSRKKCNSAWRIEQ 24
            Y+GC YS + CN  W   Q
Sbjct:  486 YFGCRYSCQICNKVWHYPQ 542
[Close]
BLAST of EMLSAG00000000376 vs. L. salmonis peptides
Match: EMLSAP00000000376 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1057:99555:102319:-1 gene:EMLSAG00000000376 transcript:EMLSAT00000000376 description:"maker-LSalAtl2s1057-augustus-gene-1.5")

HSP 1 Score: 73.1738 bits (178), Expect = 1.764e-19
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 
Query:    1 MLLAMYYGCLYSRKKCNSAWRIEQELTRMNIRLKK 35
            MLLAMYYGCLYSRKKCNSAWRIEQELTRMNIRLKK
Sbjct:    1 MLLAMYYGCLYSRKKCNSAWRIEQELTRMNIRLKK 35
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000376 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000376 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 12
Match NameE-valueIdentityDescription
gi|592933879|gb|GAXK01024674.1|2.555e+047.62TSA: Calanus finmarchicus comp6686493_c0_seq1 tran... [more]
gi|592852217|gb|GAXK01105327.1|4.924e+040.74TSA: Calanus finmarchicus comp185866_c0_seq1 trans... [more]
gi|592765275|gb|GAXK01189293.1|5.775e+034.62TSA: Calanus finmarchicus comp857185_c0_seq6 trans... [more]
gi|592765276|gb|GAXK01189292.1|6.180e+034.62TSA: Calanus finmarchicus comp857185_c0_seq5 trans... [more]
gi|592887786|gb|GAXK01070589.1|6.366e+040.91TSA: Calanus finmarchicus comp215363_c5_seq13 tran... [more]
gi|592887787|gb|GAXK01070588.1|6.366e+040.91TSA: Calanus finmarchicus comp215363_c5_seq12 tran... [more]
gi|592887785|gb|GAXK01070590.1|6.627e+040.91TSA: Calanus finmarchicus comp215363_c5_seq14 tran... [more]
gi|592887800|gb|GAXK01070575.1|6.627e+040.91TSA: Calanus finmarchicus comp215363_c3_seq11 tran... [more]
gi|592887790|gb|GAXK01070585.1|7.257e+047.37TSA: Calanus finmarchicus comp215363_c5_seq9 trans... [more]
gi|592887791|gb|GAXK01070584.1|7.327e+047.37TSA: Calanus finmarchicus comp215363_c5_seq8 trans... [more]

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BLAST of EMLSAG00000000376 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000003761.764e-19100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1057:9955... [more]
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BLAST of EMLSAG00000000376 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000376 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000376 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000376 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1057supercontigLSalAtl2s1057:99555..102319 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1057-augustus-gene-1.5
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000376 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000376EMLSAT00000000376-696223Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1057:99555..102319-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000376-683142 ID=EMLSAG00000000376-683142|Name=EMLSAG00000000376|organism=Lepeophtheirus salmonis|type=gene|length=2765bp|location=Sequence derived from alignment at LSalAtl2s1057:99555..102319- (Lepeophtheirus salmonis)
ATATTCAAATTACACATCCTTATCTCCGATTTCACCTATGATAATAAACC
ACATACAACAATATTTTCAAAAAATATGCTTCTAGCTATGTATTATGGAT
GTCTTTATTCGCGAAAGAAATGCAACTCTGCTTGGAGAATTGAACAAGAA
TTAACGAGGTGATTATTCAAAAATACATAATACATAATTAAGCTGTTATT
TTTTGAGACTCTCTTGTAAAAAGTATTTATTTTCACAGAGGTTTAGTTCA
TTTGAGCACACTTACAAATTGGGTGCATAATTTTGATAATATAGATACTA
AATATATCAAATTATCTTCTGTAACTTCTTAATTTTTTTTAGTATTTTTA
ATCAATCAAAGAGCATTTAAAACTTTTGTGTGTGTGTGTATTGATTTAAT
TGATCAGACAAAGATGCAGTGATATAGAATAAGTGAACATTATAGTATAA
AAATTAAATATCTTACCTAGGAATTACATTTGAAGTTCATAATGTACATT
AAATACATTTCCTTCTCTAGGAACGACCGAGACGCGAACTGACGCACCTT
GAGTTCAATAGAAATATTTCTTGATAATGTGGTGTCCATTGAGCTATGAC
GTTCTATTTTAAAATTTTATATTGAAAATATAAGTTTGAAGCTGTTGTTT
TTTACCACTTTCATAATTTTATTTCAATGTCTATTTCCTTTATGGATTGA
GCATTTTTTCTATATTATTTCATTGTATGGGATATTGTACAAAGTATACA
CAGAAGTGTTCGGACATTTTTTAATCCCCCTCCCCCCAAATATAGAACAA
AAATGTATTTAAAGGTAATTCACGTGTACTTACAGGTGGCGTACGTGGCT
AGCACAGACATTTGATGACCTTTTTTAAAAAATGTCTGAAAGATGATGTC
ATTTACTGTCACATGACAAAACAAAGTAACATTAGAATGAATAGTTAAAT
GTATATTAGGGTGTCTCATATTACACAAGTTACTCCCATCCCTTGTCGAT
TTGGTAAGTTTGTCTAGTGATAAATATGTTCTATGGAATTGAAGTCCAGA
GACTGGCTAYGCACTCTGAAACCTTAATGTGGMTCTTTTTMAGCCACTTT
CTTATTGCTTTGGTCATTGTTCTATTGAAAGGCATATTACACAACCCACA
TTCAATTCCCTGCCTTGAGGGAAGGAAGATTTCCCGGGAGGATGGWTCTT
TCGATGWAAGYAAGCCGTAATTCACACCTAGCAGAGAAACATAATGTTTC
CATCCCCAATGTTAACGGTTAGGATATTGTTCTTGGGGTTATACAAACTG
GTCCAATCAAATATGACCACTTACTAGTTCAATAATTATTGAGGGTTGAG
TGATTGAAATTAATTTATATTTCGATATATTAAAGCATAAACAATTAGTC
ACAGAAAGAAAAAAAAACCTGATCTGTCTAGGTTACGTTCAAGTCGAGAA
AAGGACATATGAAAATGATCGACACATTTCCATTCGTGCAATCCAAGCAG
TTGTGTGTCTCCAAGGCCACTGTCTACGCCTTCAGCAAGTCCAAAACGTT
GGAAAGGAAGAAGGTCTCTGTCAAAAAGGTCAAATTGGACTCGGAGGAGT
TAAGGGAAATAACCCAGGCCAATCCACTAAAGTCCATGAGAGCCCATTCA
AGAAATCTCGGGTTTTTACACCAGACTGTGAGCTATCAAAAAAGGAGGTG
GAAAGAGCATTGTGAGGGTGAGATGTTCTTTTGAACACTTTTGGCGAACT
TCCCTGATGTCAAGCCCCTCGACTACACCTTTTGGGTGCATGTCGAGGGG
ACATATTAGACAGCACTTTGACACCATGACAGAAAACTACATCCGCAGTG
GGTGCCAGACCTTCCCTCACCGCTTAGAAGCCATCACTGGTACTAAGGGC
GGTTGCATTAATGATTAAAAAAGCTCAGGGACACTTATATTTATATAGTA
TTTATTTTGTTAAAATTATATTATTACTTAATAAATTATATCTTCCTGAA
TTTTAAAATTCAAAGTGTTCATATTTTAGTTGACCACTCAGTACTTAGTA
TTTTCCTTCCTCCAAACCCTTTCTTTGGTGTTCATATTCTATGTCTAACT
GTTAAAATGAACCTAGCATTAAATAATTATGGAGTCTTTTCAGTTATTGT
GATTGGACAAACTTACAGAATCGGATGAAATACCTATTTTCTTCAGTCTA
ACGGTTTGCTGAGAGAAATATACATAATATGTAGATAGATGTGGAATTGT
CATTTACAATCTATGTACATTCATGATGTATGACAAAGATGAGGTAACCC
CAAGATGATAAAAATATTAATATAGGCAAATGTATGAATGTACTGATTAA
TAAAGATGCATTTATCAGTTCCCTCATAATACTGGTCAATGCTCCTCCAA
ATGACTGCCTCTTTGCCATCCTTTGACAATTAAGGCATGTTTCCTTTCCT
TCCATCTTGTGTACGTCTGTACATAAGAATGATTAATGATATAAGATTTA
TTACTGTACATATATGTATGTACCTAGTGCCCACATAAATAAATATGTAA
AGGCTTCCTGCATGAACAAATAGCTAGCTAGATGTAACAATTGCGGAACT
CAAAGAAATAATAACAGCTGCTGGTTTTTTCCCCCTTCTTTTGTCCAATA
GGTTTCTTTCTCATCTATTTTACTTTATATGTTAAATAATGTCCTATATG
TTTACATACAACTAACCCTTATGTTTCTTCTCCATTTCAGAATGAACATA
CGACTAAAAAAATGA
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