EMLSAG00000000387, EMLSAG00000000387-683153 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592814016|gb|GAXK01140552.1| (TSA: Calanus finmarchicus comp476126_c1_seq1 transcribed RNA sequence) HSP 1 Score: 105.531 bits (262), Expect = 2.406e-25 Identity = 56/127 (44.09%), Postives = 78/127 (61.42%), Query Frame = 0 Query: 5 MCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSND-DMEDLCGKGNSSDSSGNMPHFEIDSLYG----VQSIAWPFLIGG 126 +CI G+ L +PF +F + + R Q +GAF TADASLI+Y +GP KSRPFT A HA+ G G T L RPFLP S D D +++CG+ NS+ ++ +I+S + +IAWPF+I G Sbjct: 670 ICITGIIMLFLPFTSSFALLVIARLVQIMALGAFCTADASLIVYLLGPEKSRPFTMAFHALIGAGFLAATFLVRPFLPDSGDQDTDEICGRSNSTRVQDDV---KIESTIAEDVLIPTIAWPFIISG 1041 HSP 2 Score: 75.0998 bits (183), Expect = 6.539e-15 Identity = 50/116 (43.10%), Postives = 64/116 (55.17%), Query Frame = 0 Query: 75 ILAR-PF-LPPSNDDMEDLCGKGNSSDSSGNMPHFEIDSLY------GVQSIAWPFLIGGIFTAFTFGICGPLALQPXXXXXXDSCYNGGFMCGRIVSVGLAGIIRPRNMIYICLL 182 ILAR P+ +P D E + GK F + + G++ I P AFTFGICGPLAL P A++IDSCYNGGFMCGR+VS +A + PRNMI + L+ Sbjct: 1075 ILARLPYKMPRFYDSDEAVAGKDLPDKDIKYWKLFLVVVFFYYFISCGIERIYQP-------MAFTFGICGPLALAPRDAVVIDSCYNGGFMCGRLVSALIAAFVAPRNMILMSLV 1401
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592777107|gb|GAXK01177461.1| (TSA: Calanus finmarchicus comp461776_c4_seq1 transcribed RNA sequence) HSP 1 Score: 102.834 bits (255), Expect = 2.256e-24 Identity = 53/143 (37.06%), Postives = 82/143 (57.34%), Query Frame = 0 Query: 1 MGSLMCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSND-----------DMEDLCGKGNSSDSSGNMPHFEIDS----LYGVQSIAWPFLIGGIF 128 M ++ + G+STL++PF+ N P + + RF Q G F+T+D+ L+++ +GP KSRPF NA+H +G LGT L +PFLP S+D D ++ S+ + + D L+GVQSIAWPF+I G++ Sbjct: 701 MSLVLLLTGVSTLLMPFMPNLPMLLVCRFFQFLSYGIFITSDSILLVFTLGPEKSRPFINALHFFISIGFLLGTFLVQPFLPASSDKVCSSQTQVYKDTKEFNITNTQSEEEEDTDMVDYDPVIPILHGVQSIAWPFIISGVW 1129 HSP 2 Score: 46.9802 bits (110), Expect = 1.343e-5 Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 0 Query: 123 LIGGIFTAF-----TFGICGPLALQPXXXXXXDSCYNGGFMCGRIVSVGLAGIIRPRNMIYICLLFAFVG 187 L GGI F TF +CGPL L A + DS Y+ G GR++S+ LA +I P +++ IC++ +G Sbjct: 1292 LSGGIIRVFQSMSMTFALCGPLQLDSHRAALTDSFYSSGMCFGRLMSIWLATVILPSSLLIICMISCLLG 1501
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592814015|gb|GAXK01140553.1| (TSA: Calanus finmarchicus comp476126_c1_seq2 transcribed RNA sequence) HSP 1 Score: 97.8265 bits (242), Expect = 1.951e-23 Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 0 Query: 5 MCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSND-DMEDLCGKGNSSD 99 +CI G+ L +PF +F + + R Q +GAF TADASLI+Y +GP KSRPFT A HA+ G G T L RPFLP S D D +++CG+ NS++ Sbjct: 670 ICITGIIMLFLPFTSSFALLVIARLVQIMALGAFCTADASLIVYLLGPEKSRPFTMAFHALIGAGFLAATFLVRPFLPDSGDQDTDEICGRSNSTE 957
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592921757|gb|GAXK01036618.1| (TSA: Calanus finmarchicus comp903773_c1_seq4 transcribed RNA sequence) HSP 1 Score: 88.5817 bits (218), Expect = 5.442e-21 Identity = 41/104 (39.42%), Postives = 65/104 (62.50%), Query Frame = 0 Query: 1 MGSLMCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSSDSSGNM 104 M ++ + G+STL++PF+ N P + L RF Q G F+T+D+ L+++ +GP KSRPF NA+H +G LGT L +PFLP ++D + K N ++S + Sbjct: 18 MSLVLLLTGISTLMMPFMFNLPMLLLCRFVQFLSYGIFLTSDSILLVFTLGPEKSRPFINALHFFISIGFLLGTFLVQPFLPATSDKVCSGQTKDNDDETSKTL 329
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592918743|gb|GAXK01039632.1| (TSA: Calanus finmarchicus comp1594104_c0_seq1 transcribed RNA sequence) HSP 1 Score: 90.8929 bits (224), Expect = 1.860e-20 Identity = 48/129 (37.21%), Postives = 74/129 (57.36%), Query Frame = 0 Query: 1 MGSLMCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPP-SNDDMEDLCGKGNSSDSSGNMPHFEIDSLYGVQSIAWPFLIGGIF 128 +G + + GL++ ++PF+ +F + + R Q C G ++TAD ++ MGP+ SRPFT A+HA G+G L T + +PFLP S +D + EI + G+QSIAWPFLIGG++ Sbjct: 309 LGITIALTGLTSCIMPFIQSFWLLMMCRLVQFVCQGMYVTADCITVVLCMGPVISRPFTMALHATIGMGFLLATFIVQPFLPNLSGQLAQDTICDTKRTVEEMQTSVDEIPQMGGIQSIAWPFLIGGLW 695 HSP 2 Score: 59.3066 bits (142), Expect = 8.654e-10 Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 0 Query: 132 TFGICGPLALQPXXXXXXDSCYNGGFMCGRIVSVGLAGIIRPRNMIYICLL 182 T+ +CGPL L P A + DS YNGGFMCGRI LAG++RP +M+ I +L Sbjct: 903 TWSMCGPLQLDPGMAALTDSFYNGGFMCGRITGSVLAGVLRPSSMVIISVL 1055
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592929978|gb|GAXK01028567.1| (TSA: Calanus finmarchicus comp468155_c0_seq2 transcribed RNA sequence) HSP 1 Score: 80.8777 bits (198), Expect = 6.589e-17 Identity = 45/126 (35.71%), Postives = 71/126 (56.35%), Query Frame = 0 Query: 7 IAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSSDSSGNMPHFEIDSLYGVQSIAWPFLIGGIFTAFT 132 I G+ ++ P+ +FP + +G F TAD SL++Y GP KSRPFT ++HA GVG LG+++ +PFLP SN +C G + + ++ + + G+ SI WPF+I G++ T Sbjct: 322 ITGIFVILTPWADSFPLLIGIVTIFGMSLGLFDTADNSLMVYMFGPKKSRPFTQSVHAFVGVGFVLGSLMVQPFLPESNAGDSSVC-PGEGLNEAAHV-EYTYKIMAGLPSINWPFIIIGVWHFLT 693 HSP 2 Score: 37.3502 bits (85), Expect = 2.014e-2 Identity = 37/150 (24.67%), Postives = 67/150 (44.67%), Query Frame = 0 Query: 42 DASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTI---------LARPFLPPSNDDMEDLCGKGNSSDSSGNMPHFEIDSLYGVQSIAWPFL---IGGIFTA--FTFGICGPLALQPXXXXXXDSCYNGGFMCGRIVSVGLAGIIRPRNMI 177 +A+ + Y + P N I GV FL I + P ++++E+ SS N+P++ LY + + L + G F + +T+G+CGPL + P A I++ Y G F+ GR + ++ ++ P +I Sbjct: 598 EAAHVEYTYKIMAGLPSINWPFIIIGVWHFLTAIGMIVLGFSGMEMPSFYDKDENVEE-----KSSSKLTNVPNWW---LYMILVYIYYVLSCGLEGFFQSMTYTYGLCGPLKMSPGEANILNGLYFGAFVIGRSSGICISRLMSPTKII 1023
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592929979|gb|GAXK01028566.1| (TSA: Calanus finmarchicus comp468155_c0_seq1 transcribed RNA sequence) HSP 1 Score: 80.8777 bits (198), Expect = 7.251e-17 Identity = 45/126 (35.71%), Postives = 71/126 (56.35%), Query Frame = 0 Query: 7 IAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSSDSSGNMPHFEIDSLYGVQSIAWPFLIGGIFTAFT 132 I G+ ++ P+ +FP + +G F TAD SL++Y GP KSRPFT ++HA GVG LG+++ +PFLP SN +C G + + ++ + + G+ SI WPF+I G++ T Sbjct: 322 ITGIFVILTPWADSFPLLIGIVTIFGMSLGLFDTADNSLMVYMFGPKKSRPFTQSVHAFVGVGFVLGSLMVQPFLPESNAGDSSVC-PGEGLNEAAHV-EYTYKIMAGLPSINWPFIIIGVWHFLT 693 HSP 2 Score: 37.3502 bits (85), Expect = 2.040e-2 Identity = 37/150 (24.67%), Postives = 67/150 (44.67%), Query Frame = 0 Query: 42 DASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTI---------LARPFLPPSNDDMEDLCGKGNSSDSSGNMPHFEIDSLYGVQSIAWPFL---IGGIFTA--FTFGICGPLALQPXXXXXXDSCYNGGFMCGRIVSVGLAGIIRPRNMI 177 +A+ + Y + P N I GV FL I + P ++++E+ SS N+P++ LY + + L + G F + +T+G+CGPL + P A I++ Y G F+ GR + ++ ++ P +I Sbjct: 598 EAAHVEYTYKIMAGLPSINWPFIIIGVWHFLTAIGMIVLGFSGMEMPSFYDKDENVEE-----KSSSKLTNVPNWW---LYMILVYIYYVLSCGLEGFFQSMTYTYGLCGPLKMSPGEANILNGLYFGAFVIGRSSGICISRLMSPTKII 1023
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592929976|gb|GAXK01028569.1| (TSA: Calanus finmarchicus comp468155_c0_seq4 transcribed RNA sequence) HSP 1 Score: 63.1586 bits (152), Expect = 1.195e-11 Identity = 27/74 (36.49%), Postives = 45/74 (60.81%), Query Frame = 0 Query: 14 VIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDD 87 ++PF+ +F + FCI + TA SL+++ +G +SRPF ++HA G LG+++ RPFLP +N+D Sbjct: 319 IVPFVSSFGLLLAALLAAGFCIACYNTASNSLVVFMLGQDRSRPFIQSLHASLATGYMLGSLIVRPFLPENNED 540
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592929977|gb|GAXK01028568.1| (TSA: Calanus finmarchicus comp468155_c0_seq3 transcribed RNA sequence) HSP 1 Score: 63.929 bits (154), Expect = 2.758e-11 Identity = 27/74 (36.49%), Postives = 45/74 (60.81%), Query Frame = 0 Query: 14 VIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDD 87 ++PF+ +F + FCI + TA SL+++ +G +SRPF ++HA G LG+++ RPFLP +N+D Sbjct: 319 IVPFVSSFGLLLAALLAAGFCIACYNTASNSLVVFMLGQDRSRPFIQSLHASLATGYMLGSLIVRPFLPENNED 540 HSP 2 Score: 41.5874 bits (96), Expect = 7.604e-4 Identity = 35/138 (25.36%), Postives = 65/138 (47.10%), Query Frame = 0 Query: 52 PIKSRPF--TNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSSDSSGNMPHFEIDSLYGVQSIAWPFLIGGIF-----TAFTFGICGPLALQPXXXXXXDSCYNGGFMCGRIVSVGLAGIIRPRNMIYICLL 182 P ++PF H G+ F+ ILA +P ++ + + ++S+ + + + L+ + + W F+ GG+ +TFGICGP ++P A + + Y F+ GR+ V L+ + P +I LL Sbjct: 631 PDITKPFLIIAITHVATGL-AFVFLILAGFPMPQYSETVSKDIKELDASNQNKETKKRKSNFLFLLLVLIWFFISGGMEGFFQSQTYTFGICGPHLMEPGKAAALTTVYFSCFLAGRVSGVFLSTRLSPGVLILSSLL 1041
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592954895|gb|GAXK01003658.1| (TSA: Calanus finmarchicus comp454956_c0_seq1 transcribed RNA sequence) HSP 1 Score: 63.5438 bits (153), Expect = 4.613e-11 Identity = 34/99 (34.34%), Postives = 58/99 (58.59%), Query Frame = 0 Query: 35 IGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSSDSSGNMPH-------FEIDSLYGVQ--SIAWPFLI 124 IG+ TA SL+++ +GP +S P+T ++HA G+G LG+++ RPFL P +D +C K + S + ++++L G + ++AWPFLI Sbjct: 1053 IGSLDTASNSLVLFMLGPDRSPPYTQSLHAFVGMGFVLGSLIVRPFL-PDTEDSSAVCAKEEALSYSNVTQNVVDVDDAVQVENLIGTEIPALAWPFLI 1346 HSP 2 Score: 46.2098 bits (108), Expect = 1.947e-5 Identity = 38/127 (29.92%), Postives = 57/127 (44.88%), Query Frame = 0 Query: 62 IHAICGVG-CFL---GTILARPFLPPSNDDMEDLCGKGNSSDSSGNMPHFEIDSLYGVQSIAWPFLIGGIFTA--FTFGICGPLALQPXXXXXXDSCYNGGFMCGRIVSVGLAGIIRPRNMIYICLL 182 +H + VG C L G + R + D+ + CGKG + H +I L + + G F + FTFGICGP + P A + + Y F+ GR V L+ ++PR +I LL Sbjct: 675 VHLLTAVGYCSLVAGGLPMPRFYETVCQDESKLECGKGEKQRTK----HSKITLLLAFFYFTFSCGLEGFFQSQTFTFGICGPHKMVPGKAAALTTTYFACFLAGRFSGVVLSTKLKPRTLIVTSLL 1043
BLAST of EMLSAG00000000387 vs. L. salmonis peptides
Match: EMLSAP00000000387 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1061:189630:200459:-1 gene:EMLSAG00000000387 transcript:EMLSAT00000000387 description:"maker-LSalAtl2s1061-augustus-gene-2.3") HSP 1 Score: 370.933 bits (951), Expect = 5.855e-132 Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 Query: 1 MGSLMCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSSDSSGNMPHFEIDSLYGVQSIAWPFLIGGIFTAFTFGICGPLALQPAAAIIIDSCYNGGFMCGRIVSVGLAGIIRPRNMIYICLLFAFVG 187 MGSLMCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSSDSSGNMPHFEIDSLYGVQSIAWPFLIGGIFTAFTFGICGPLALQPAAAIIIDSCYNGGFMCGRIVSVGLAGIIRPRNMIYICLLFAFVG Sbjct: 1 MGSLMCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSSDSSGNMPHFEIDSLYGVQSIAWPFLIGGIFTAFTFGICGPLALQPAAAIIIDSCYNGGFMCGRIVSVGLAGIIRPRNMIYICLLFAFVG 187
BLAST of EMLSAG00000000387 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold948_size77650-snap-gene-0.12 (protein:Tk08296 transcript:maker-scaffold948_size77650-snap-gene-0.12-mRNA-1 annotation:"sodium-dependent glucose transporter 1") HSP 1 Score: 106.686 bits (265), Expect = 5.311e-29 Identity = 52/129 (40.31%), Postives = 79/129 (61.24%), Query Frame = 0 Query: 5 MCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGK--GNSSDSSG---NMPHFEIDSLYGVQSIAWPFLIGGIF 128 M + G+ +++PF F + R Q +GA++T D+SL++Y MGPIKSRPFTNA+HA G+G T L RPFLP + +++ GN++ SG + P +I+ L+G+Q IAWPF+ G + Sbjct: 90 MSLTGVGMIILPFTATFAFLVTIRALQYTLLGAYITGDSSLLVYTMGPIKSRPFTNALHACVGIGFLAATFLVRPFLPSEANALKNQAEVCFGNTTAPSGGASDEPRNDIEYLWGLQKIAWPFVFSGAW 218
BLAST of EMLSAG00000000387 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold17_size721972-snap-gene-6.22 (protein:Tk09984 transcript:maker-scaffold17_size721972-snap-gene-6.22-mRNA-1 annotation:"sodium-dependent glucose transporter 1") HSP 1 Score: 57.7658 bits (138), Expect = 2.311e-10 Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = 0 Query: 130 AFTFGICGPLALQPAAAIIIDSCYNGGFMCGRIVSVGLAGIIRP----RNMIYICLLFAFV 186 FTFG+CGPL L P+ A++ID +NGGFM GR + +A I+ P ++ I +CL+ + V Sbjct: 284 EFTFGLCGPLHLNPSEAVVIDKSFNGGFMVGRFFGMFVAHIVPPKLLLKSSIVMCLMLSAV 344 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000387 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000000387 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000387 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000387 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000387 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000387 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 2
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1061:189630..200459- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000387-683153 ID=EMLSAG00000000387-683153|Name=EMLSAG00000000387|organism=Lepeophtheirus salmonis|type=gene|length=10830bp|location=Sequence derived from alignment at LSalAtl2s1061:189630..200459- (Lepeophtheirus salmonis)back to top Add to Basket
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