EMLSAG00000000414, EMLSAG00000000414-683180 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000414
Unique NameEMLSAG00000000414-683180
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000414 vs. C. finmarchicus
Match: gi|592942373|gb|GAXK01016180.1| (TSA: Calanus finmarchicus comp2958343_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 54.6842 bits (130), Expect = 4.174e-8
Identity = 25/62 (40.32%), Postives = 42/62 (67.74%), Query Frame = 0 
Query:   84 IILREMRNLDRDREQILYGPQIRMIFEKYNVPVLHVLDQLLQRHIAPNEYGFSNYEDILQYL 145
            +++ EMR LDRDRE+I++   +  + +KY +P+   L +L Q+    N  GF+NYED+++YL
Sbjct:  346 MMVMEMRKLDRDRERIIHPSTLDNLVQKYKLPITPCLTRLKQKFEDKNFPGFTNYEDVIRYL 531
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BLAST of EMLSAG00000000414 vs. C. finmarchicus
Match: gi|592873160|gb|GAXK01084402.1| (TSA: Calanus finmarchicus comp5236376_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 38.1206 bits (87), Expect = 5.095e-3
Identity = 18/77 (23.38%), Postives = 42/77 (54.55%), Query Frame = 0 
Query:  230 RFNIDNFRYFLQERDHYGNGQISRQHVQQACEMSYLNIGSEPFYQNKTLQRWLEAXXPLGKGNIFLVEKLVDYLKRS 306
            + +++     ++ +DHYGN Q+S+Q +  +  ++ + +  E       + RW+ A   +G+G I+ +  L+D L ++
Sbjct:   67 KVDMEKLGSIMRSKDHYGNEQLSKQQIVVSLRVADITLDRE------MVTRWMRAADIVGRG-IYSIPALLDILGKA 276
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BLAST of EMLSAG00000000414 vs. C. finmarchicus
Match: gi|592929982|gb|GAXK01028563.1| (TSA: Calanus finmarchicus comp469295_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 36.1946 bits (82), Expect = 1.515e-1
Identity = 16/45 (35.56%), Postives = 25/45 (55.56%), Query Frame = 0 
Query:  220 ELGDIIRASPRFNIDNFRYFLQERDHYGNGQISRQHVQQACEMSY 264
            E G I+   P   I++    +QER  +G+GQ S QH + A  ++Y
Sbjct: 1266 EAGQILTCCPLAGIEDKEIKVQERSGFGSGQCSLQHDKSATCVTY 1400
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BLAST of EMLSAG00000000414 vs. L. salmonis peptides
Match: EMLSAP00000000414 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1066:184635:187941:1 gene:EMLSAG00000000414 transcript:EMLSAT00000000414 description:"maker-LSalAtl2s1066-augustus-gene-1.14")

HSP 1 Score: 634.795 bits (1636), Expect = 0.000e+0
Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0 
Query:    1 DNQSPTSSSNEVFHHSSTQQILGKQKIKLNETFIIRVDNNQNRHFFLPQICPQTDNATTNLDEAYLKNVLESSLRSTSSRTLNIILREMRNLDRDREQILYGPQIRMIFEKYNVPVLHVLDQLLQRHIAPNEYGFSNYEDILQYLLDLKSSNYVEGCSSSNHLRTSSRFSMASMSSSLPARLNKTPTLPSFNHPKDYASSPFDDKTYFFMDRKEAGLLLELGDIIRASPRFNIDNFRYFLQERDHYGNGQISRQHVQQACEMSYLNIGSEPFYQNKTLQRWLEAXXPLGKGNIFLVEKLVDYLKRSTPF 309
            DNQSPTSSSNEVFHHSSTQQILGKQKIKLNETFIIRVDNNQNRHFFLPQICPQTDNATTNLDEAYLKNVLESSLRSTSSRTLNIILREMRNLDRDREQILYGPQIRMIFEKYNVPVLHVLDQLLQRHIAPNEYGFSNYEDILQYLLDLKSSNYVEGCSSSNHLRTSSRFSMASMSSSLPARLNKTPTLPSFNHPKDYASSPFDDKTYFFMDRKEAGLLLELGDIIRASPRFNIDNFRYFLQERDHYGNGQISRQHVQQACEMSYLNIGSEPFYQNKTLQRWLEAXXPLGKGNIFLVEKLVDYLKRSTPF
Sbjct:    1 DNQSPTSSSNEVFHHSSTQQILGKQKIKLNETFIIRVDNNQNRHFFLPQICPQTDNATTNLDEAYLKNVLESSLRSTSSRTLNIILREMRNLDRDREQILYGPQIRMIFEKYNVPVLHVLDQLLQRHIAPNEYGFSNYEDILQYLLDLKSSNYVEGCSSSNHLRTSSRFSMASMSSSLPARLNKTPTLPSFNHPKDYASSPFDDKTYFFMDRKEAGLLLELGDIIRASPRFNIDNFRYFLQERDHYGNGQISRQHVQQACEMSYLNIGSEPFYQNKTLQRWLEAXXPLGKGNIFLVEKLVDYLKRSTPF 309
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000414 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000414 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592942373|gb|GAXK01016180.1|4.174e-840.32TSA: Calanus finmarchicus comp2958343_c0_seq1 tran... [more]
gi|592873160|gb|GAXK01084402.1|5.095e-323.38TSA: Calanus finmarchicus comp5236376_c0_seq1 tran... [more]
gi|592929982|gb|GAXK01028563.1|1.515e-135.56TSA: Calanus finmarchicus comp469295_c0_seq1 trans... [more]
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BLAST of EMLSAG00000000414 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000004140.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1066:1846... [more]
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BLAST of EMLSAG00000000414 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000414 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000414 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000414 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1066supercontigLSalAtl2s1066:184635..187941 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1066-augustus-gene-1.14
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000414 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000414EMLSAT00000000414-696261Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1066:184635..187941+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000414-683180 ID=EMLSAG00000000414-683180|Name=EMLSAG00000000414|organism=Lepeophtheirus salmonis|type=gene|length=3307bp|location=Sequence derived from alignment at LSalAtl2s1066:184635..187941+ (Lepeophtheirus salmonis)
GACAATCAATCACCTACCTCATCTTCAAATGAAGTCTTCCATCATTCAAG
CACACAGCAAATACTAGGGAAGCAAAAAATAAAGCTAAATGAGACTTTTA
TTATTCGAGTGGACAATAATCAAAATCGACATTTCTTCCTTCCGCAGATC
TGTCCTCAGACGGATAATGCCACAACTAATTTGGATGAAGCTTATTTGAA
AAATGTCTTAGAATCGTCTCTCAGATCAACTTCTTCAAGAACTTTAAATA
TTATTTTAAGGGAAATGAGGAATTTGGATCGGGATAGGGAGCAAATTCTC
TATGGTCCTCAAATACGAATGATTTTCGAAAAATATAACGTAATGAAAAA
ACCTCTAAAATTACATATATCTAAAGGGAGGCTTTTCATATACCAATCAT
TAATTTATGTAGGTACCTGTTCTCCACGTTCTTGATCAACTCTTACAAAG
ACATATAGCACCGAATGAATATGGATTTTCAAATTACGAAGACATACTGC
AATATTTACTTGATTTGAAAAGTTCAAATTATGTAGAAGGTTGCTCCTCT
TCGAATCATTTAAGAACTTCAAGTAGATTCAGCATGGCGAGTATGAGTAG
TTCACTTCCAGCTAGACTGAATAAAACACCAACTTTACCTTCATTCAATC
ATCCGAAGGATTATGCATCATCCCCTTTTGACGATAAGTACGTATTTTAG
TTTCAGTTCGTATTTTAAGATATTTAATTATTCAGAAACAAGCCTAGAGT
TCAATAACATTATTACCTGTACTGTATCTCACGACATTTCCTTCAAAAAG
AAGCACAAAAATTCGAACTCAACCAATCAACGTTCAAACACTGATCAAGG
GAAAAGACTGAGAAAATTTGGCAGCTTACAAAAAGTATAGTGTGAATTTT
TATATTGCCATGGTAACACCGTGTCTACTTTCCTTTCAGAAATAACTTGG
AATCAGTTCATAATCAGCTAGGTCGTTTTTAGCCAATCAACGTTCTGAAC
AATAGTAAAAGACATATTAAATAAGTAGAAAATAAACAGCTGATAGATTT
CAACAAATAAATTGTAGATATTTTCGCAGAGTTATCCCAGTAGCATAAAA
TTAGCTATATATTTTATGGTCTGCTGTCAATTTTTCTACTTACTATTTTT
ATTAAGTACTAGCAGGTGTAAACGACATTGCGCAAATTAACAGAAAAAAA
TTTAAGAGTTTTGTTACCCACATTCATGGCCTATTCAATTTGAAAAATTT
TCATTTTTTTTTAATCTTTGAATCTTATGCACAAGTTTAAATTGGGGCAA
ACACAAATACTAAAGGACTTTTTTAAGCAATATTTTTATTACTTCCGCTG
AGATACATAAAGACCATTTTTTATCAGCTCTTGAGCATCCAATGTAAACA
TGATCATGATTTTTTTAATATGACACACTGAACTTTAGCTACTTTACGCT
CGTTGTTACATTAGTATTTTTAGATCATGTAGCCATGCAGTTCTAAGCAG
ACCTGTAAGAAATTTATCATAGAATGCGGGAGTGACTTTTTCTAGTTGCC
AATCTGAACAGGGTGTTTTATTTTCCAAAGTTTTTTTCATTATTATTTCA
TTCTTGTAGAAGAATATATACTTATAGCTGATATAATAAAACTTCATGAC
AGCTAAACTGGTTTCCTCGCAAATATTCTTCAAATTGCTAGGATTATCAC
GTTAATTTTAGATTTATTTCTTTTTTGCATACCAGTAGCGCATATTTTAT
ACATCACTGATCATAGGTCCCACAATAGGAGGAGACATTATCACATCACC
TTTTCAAAGATAATAAAAATGAATTGATTAGCTCTTTGTAATGTCTCCGT
GTGGGGGACAGAGGACGAAAAAGAAGTGTAGTAATCTACGAATAAATGAA
AAATTTGCAAGCTGCTACCAATTGATTTTAGGGCTCTTCTTTCTATTTTT
TCATGGTGGGATATACCAACAATAAAGATAACTACATGATCTATGTAATA
ACTAGAGATAGGGGTTTTGAAATAGTGCGCTGCCTGTTTAATGATTTTTG
AAGGACAAAATGAATTATTGCAAAAATTAGGAGAACTTTCCACATTTAAA
AAAACAAAAATACATTAGGGTAGTGAAAATATTATAATTATACTTAAATT
CATATATATCTATTTTATTTTGTATTTTTAATCTATTTCCGCCCTAATTT
TTAACTATTTGAATTACTTCAAATAGTTACATATTAAGGCTGTAAGCATA
GGTAGACTGGACCTCTTCTTTTAGAGGGAGATGTTAACACACAAACAATT
ATTAAATAACGAAAAAAGGAACAGAATGAGAAAATGCATCAACCGTTTTT
CTTTTTCTAATTACTATACTTAGTTTTTTATTTACACACATCCCCTCTTT
AGTAATAAATTTGCAAGTGTTCTCTCTTTTGTACCATTTTTTTAAGCTAG
ATTTCCTCGAACTACTAAATTTTTCATTCTGTGTCAATTTTATATGTATA
TCATATCAATAGTGATTTTAACTTTGGTTATTATAGGACCTACTTTTTTA
TGGATCGGAAAGAAGCAGGACTCCTATTGGAATTAGGGGATATTATAAGA
GCAAGCCCAAGATTTAATATAGATAATTTCAGATATTTTTTACAAGAAAG
GGATCACTACGGAAATGGACAAATCTCACGTCAACACGTACAACAAGCAT
GTGAAATGTCTTACCTTAACATAGGCTCTGAGCCTTTTTATCAAAATAAA
ACGCTACAAAGATGGCTAGAGGCTTMTGYTCCTCTTGGTAAAGGAAATAT
TTTCTTAGTTGAAAAATTAGTGGACTATTTGAAGAGAAGTACACCATTTT
GATCCTGGATTCCATGCATGAGAATAATTATAAAAGTTATAAATTCTAAG
CAATGCTGTTATCTTAAAAATAAGACCAAACATTAACATGGTAACACTGA
CAATTTGAGGGAAAAAGAAAAGGGAATTTTTTGAGGAAAAGAGTAGCTTG
GCCGTCATGACCTGTCATTGAATTAGCTGTAAGCAGCTATGAGATGAAGG
AAAGAAACACAAATTACACTCCGTATCTAGCAAGGCTACAAGCAGGAATT
ACTAAAATGTCCATCTTCAATTAGACTCTGAGTCTAACAAAGGCTTATAA
CTCTCAAACAAATCCTCACTGTTACTCTCCGTCTTTCAACAGCACATCAA
CTTTATACTTTGATGTTCTCTCTCAAGAATTAAAGAATAATAATAACCGC
TTAGGAAAATAAGTATAACACACTGTTTATATTCGCAACTATAAAAGTTG
TTTACAC
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