EMLSAG00000000475, EMLSAG00000000475-683241 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000475
Unique NameEMLSAG00000000475-683241
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000475 vs. C. finmarchicus
Match: gi|592894617|gb|GAXK01063758.1| (TSA: Calanus finmarchicus comp8909141_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 3.868e+0
Identity = 15/50 (30.00%), Postives = 29/50 (58.00%), Query Frame = 0 
Query:    7 IGI--KFDFHRQKRPQGLYEEYEGKKICLKRYKGQVQVQNLENIRIPLEK 54
            +GI  K+  H   + +G+ +EY G ++  K+   +VQV  L   R+P+++
Sbjct:   18 VGIMKKYKLHVHPKEEGILDEYPGSQVIAKQIPWEVQVGQL---RVPIKE 158
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BLAST of EMLSAG00000000475 vs. C. finmarchicus
Match: gi|592849737|gb|GAXK01107807.1| (TSA: Calanus finmarchicus comp3993920_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 4.390e+0
Identity = 16/38 (42.11%), Postives = 21/38 (55.26%), Query Frame = 0 
Query:   21 GLYEEYEGKKICLKRYKGQVQVQNLENIRIPLEK-WLN 57
             L+ EY+G K CL    G V  + L  +R+PL   WLN
Sbjct:   53 SLFREYQGFKACL---IGAVPRKELAEMRLPLPLYWLN 157
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BLAST of EMLSAG00000000475 vs. L. salmonis peptides
Match: EMLSAP00000000475 (pep:novel supercontig:LSalAtl2s:LSalAtl2s106:86488:94304:-1 gene:EMLSAG00000000475 transcript:EMLSAT00000000475 description:"snap_masked-LSalAtl2s106-processed-gene-1.7")

HSP 1 Score: 146.747 bits (369), Expect = 2.488e-47
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 
Query:    1 MPTRYNIGIKFDFHRQKRPQGLYEEYEGKKICLKRYKGQVQVQNLENIRIPLEKWLNIARSHLPEKQRIIF 71
            MPTRYNIGIKFDFHRQKRPQGLYEEYEGKKICLKRYKGQVQVQNLENIRIPLEKWLNIARSHLPEKQRIIF
Sbjct:    1 MPTRYNIGIKFDFHRQKRPQGLYEEYEGKKICLKRYKGQVQVQNLENIRIPLEKWLNIARSHLPEKQRIIF 71
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000475 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000475 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592894617|gb|GAXK01063758.1|3.868e+030.00TSA: Calanus finmarchicus comp8909141_c0_seq1 tran... [more]
gi|592849737|gb|GAXK01107807.1|4.390e+042.11TSA: Calanus finmarchicus comp3993920_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000475 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000004752.488e-47100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s106:86488... [more]
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BLAST of EMLSAG00000000475 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000475 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000475 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000475 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s106supercontigLSalAtl2s106:86488..94304 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s106-processed-gene-1.7
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000475 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000475EMLSAT00000000475-696322Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s106:86488..94304-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000475-683241 ID=EMLSAG00000000475-683241|Name=EMLSAG00000000475|organism=Lepeophtheirus salmonis|type=gene|length=7817bp|location=Sequence derived from alignment at LSalAtl2s106:86488..94304- (Lepeophtheirus salmonis)
ATGCCTACTCGCTACAATATTGGTATTAAGTTTGATTTCCATCGACAAAA
ACGTCCTCAAGGGCTCTATGAAGAATATGAAGGCAAGAAAATTTGTTTGA
AACGATATAAAGGACAAGTACAAGTCCAGAATCTGGAAAGTGTTTTTCCA
AAGGTTAAGATTCTAAGAGGAGGCGAGATAATTCTGTGCATTCTTTAATA
TTATATTCCACCTTTGTTTCAAACTATTTCTCGATAAAGTAAAATATGGG
CTCAAAAGTCCTTTGTGTGAAGCCCGGCACTTTTCATCACATGTGTTATA
ATAGATATTCACATCTACAAATAAACAAAAAAAACAACAACCATAAATCA
TAAATAAATTTTATTAAAAATATTCAATTCTCAATTCATGGTGTTATGAG
GAGGACCACACAAAGTATATGTAAGTGCTATATGTGAGGTTGTATGTATG
TAGTTTGAGGACCCTTGAGTAGTGTATAAAGAAACAACTGCAATAAATAT
GCGATTTTATGACCGGACAAAGGAAGCAATTGTACATTTCAAGATCCCTC
CATTCCATGAGAATTGAGACATCTTTCAAAGGACCCCCTTGAGCCTCTTT
CTCAATACAAGGGTATACAACATACATATATTCTATGTTGAAGATGTACA
ATCTAAAAACTCTGTAGGTAAATGTAAATGAATATTTATTTAAGAAAAAA
AAAATGGAAATGGAAATAGGGAAAAGTTTCATTTTTTTACTTTCTATATA
CTTTTAACATATGTATACTTTACGTATGTAAGGGTAAGGCGATTGAGAAG
TAATGAGGCAATTTATTCAAGAAATCATTAAACACTCCCCTTAAAAAAAC
AGCTTCTTTAGAAAATTATTTGCAAATATATACATATTTGCAAATCAAAT
CTAACAAAAGTAATTTATTTTATTTTATTCATCTCATTACTCACTGTCAT
CCAATTGGCAGATCCATACTCTATAGATATTCATTGATAGGTGTGAGCAT
TTCAGAAGGCTATTGAATTAAAACCCTTGTTAACAAGATTTGCATTTTCT
ATGATTTTGGAGGGAGAAAATATAATAATGCAATAGAGAGCAGAATCTTC
AAACATTAGCATTAGTTCAGTAAAATATGTTAAATTCATATTTAAATATA
TATATATAACTATTTTGTTATGCGTTAAAAAAAAATAGACCAAAAGTACG
CGAGAATTCTTCACTCAAAGGAAGACGTTTATACCACGAGGTTCTATTAT
ACAATGAAAAAAAAAGACAGATAACTCGAAATGTTTGACTTATTTTAAAT
CACAAAACGGTTATTTTTTTCTACGTTTTGCCCGATCTTAGTCCTGAATA
GAGCTTTAAAGGATGCCTTGTCGGTATTTTATAAAAAAAGCCAAATAGGA
CCGTGAAAGCCTTGCCAATTTGAAATAATGTTTGGGATGAGAGCAGCTAG
CTTTTGTAGAGTTTTATTAGATTTGCTGTTGTGAGAGGATGGAAGTACAC
ACAAATTACTCTTTATATCCATTAAGTACATAAGCAGGAATTACTACGAT
ATCAATCCTCAATTCTACTTTGACCCCAACATGGACTCTCTCGTATTATG
GTCGGACATAGCGTCTAAAGACAAAAGGAAGAACAAAACGTAGAATGAAC
AATTTTTATGAGGATAATTCGAAACAAAAAAATTATGGAACAAAGATAAA
CCAGTTAATTTTACGGTTAAAAAATTTCTTTATTCGCTTAAATATATATT
TGCAGTAAATTTTAGGAACATTTTTAGTTTGTTAATATGCTCAATTGGCG
TTATACCTATAGGTTTCACGTTTATTGTATTCTGACTTCAAATTGCTAAG
ACTCCATAAGGCGAAAAAAGACTATTGCATGATGGGCTATATAAAGAAAA
TTGTTATAACATCTATTGCAAATGTGATAAAAGAAGATAATGTTGGGGCA
GAGCCATTACAAACAACAATTTAATCAGCATCATCAAAATTCATGCCTTC
AGATCTCTTTGTTTATGCATTTTCTTTATCTCATATTTTTTTTCTTCCAA
GATATCCTCATGAAAATGGTCTGTTCTACGTTTTGTCTTTCCACATTTTG
TCGTTTGTCCTAGTACCGTTTTTTATGTGAACACGCATTTGTGGTTAAAT
GATAATTTATGCTCTCTTTTCAAGAATTTAAAAGTAATGATTTCAGCCTT
GGAAAACAAAAGCCCCTGCTCAAAGTGCCAATGACAAAAAGTCTCACACT
AGTTTTAGGTTATTATATTTGTTACAATTATAATCATATCTCAGAGGCAT
TGTCTCTCGGGATCCCTTTATGTTTTTAAATTTGAAAAATTCCTAATAAA
AACTAAATATACTATTGATGAATTATTTTCTTGAAAGTAAATTCTATATA
ACTCACATTTAAAAAACAAACAAACAATAACCAAGGAATTGCATTAAGTA
CTGCTAAGGAAGTCTATATTAAAAAACAAAAAACAAAAAAAACAACCAAT
ATCATTCAAAATACTAAAAATTTTATTAGGATTCATGCCACCGACAACAT
CTGGGGAATCAATAAGAGGTTTTTCCGGAGTTGGTTTATTTGTTTAAACT
ATTTAGTAGATACAAGTGTTGATGGTTACATACGTATTTGAAGTCTATAG
GATGTGGGATCTACCTAATATTATATATTGTGTATAAATTGATAGCCAAA
TGATTAGATTTTTATTAAAGCTATTATAATGGTATTTTATTCACGATTAT
TAAGATTTATGTATAAAAATGAATACCTATATATATACCTATTAATACAA
GGTAAATGAAATAAACATCTTGCATTACTCCGTTATGATTAGATATTAAA
AAAAATTTATAATTAAGATCTTTTAATCCCGCAATCCCATGATAAGATTT
TTCTTTAAAATTACAATCTGCATATTAGAAATGAACTCATAAGAAATTTG
ACCAACTACCAATTAATTGGCTGTTGTTAATCGGCCAATTGTTGGTTAAT
TTAATAGTAAATACTAAATATAGTTTAAAAAAGCCCAGTAAACGGCAGCC
ATTTTTATAAAAATTTTAAAATATATCTGGCAACACTGCTTTAGCCTTGC
ACAGTCTCTCAGTACGGGTACGCTATTCAAAGCTATAAACCAAGTGGCGA
AACGTAACCTAAGTGATGAATATTTGAAAGTAGTGGTCTTAACGGCACTT
TTTTAGCTCGCTAGGGGCGTCAAGTGCATTTTAATATTATTCTATAACTA
ACTACTATCTTCCATGAATTCACCTTTTTTACTGACTCAAAAAGCTGAAT
TCTGCAAAGTGAAAAAAAAAAAATATGTCATGAGGGAAAATGATCAAGTG
ATATAATAAAAAACGACATCTTGCGTGAGAAAAAGTATATAAACTAGACA
AAGAATTACTCAAGGTAACATGCATATATTACCACTCTGTTTTAAAGCAA
TATCACTATTATTTTGTAGAGTATGCTCTTAAGTCTGTTATAAATGCAAT
CCCATTCATTCCCTTATAAATTAAATTGATAATTGTGGTCCAATAAAACA
AAAGCAAGCTTGGATCTGTATTATATTTCCATTTAAAGTAGCCGATATTG
ATTGGACAGTTATAAATGATAAATTAACAATTTTTTTATTTGAAAGGTGC
AATATGAGGGGCAGTATACAGCTCCTAAATCAAATAAGGTTTCTAATCCA
TAGCTAAAGTTCTTGAGTATTTTAAATAACCCCATAAATTTGAATACAAG
GCCTATAACTGACTCAAATATGGGCTATGCATATATATGAAGTAAAAACT
AAATTGATCTGAGGGCAATAATTATATATACTTCTGTGGGATATATCGTT
TTACTTAAAGATCTAAAACTTGTCAAGTAGCTCGTGGAACTATGCTCTTG
ATTTTGAATACTTATCGTACACCACATTCCCTTCCATACTATTCCACGTT
GAAGTGTATCCCCGGGTAGTATGAATTTTTTTTGAAGAGAGATAAACATC
ATAAATTGAAGAGTACTACATTATTTTATCATTGTTGTGTTTTAATTAGT
TGATTATTTTTGATACTTTTATGGATGTTTGATCTTGGTTTGGAGATCTA
ATTTTAAACTGCAATTTGTAATTATGTTTTGTTTGCCTTAATTCTTTCCA
ACATTTTATATTGTTTTGAGGCTATGTGTAGTTATATTATTTTAACTATA
GTTGTACATATATCATCAAAATATGAATAAAGACTTTTAAGTTATTTTTT
TGGTTATTTTAACTCACCCTATAAGCTTGAGTACAAAACCTATAACTGAC
TTAAATATGTCTATGAAATATTTGGGTATGTATGTATATGAAGTACAAAA
CTAAATTGGAGTTTTACCCATTTTTTGATTTTGGTTCAAGATTATTTTTA
TGTTGATGTTCCACCAATGCTTAGGTCTTGTATTTGCTCATGTTGTTATT
CGAGTATTGATCACTAAAGTTGTAAATACTAAGCATTTTTGTAGTTGGCA
ATCATTTAATTTCTTATAAAGTAATTGTCAATTACCAATTAATCTGCTTA
GAGGCAGATTAATCTGTGAGTACTACTTGCAGAATGCTTGAAATATCAAA
TACACACATGTACAAGAATATCTATGTAAGTAATTGTAGATACAGTACGT
AAGATTAAAAAAAGCTCGATTTTTTAACTATTAATAGAAAAAGTTGTAAA
ATAACAAAAAAAAAACTTTTTACTCTGACAATTTTCTCTTTTTACTTTAT
TTCTCTTCTTTAATCTTGGGAAAAGAAACAAAAAAACAAAACAAAAAACG
ATAGCAACACTAATGATCAAAATGGAAAAGAATACTTGGTTTTGTTTTAA
GTAAAGAAAACAAAAACTTATACAACATACAGTACTCAGAATAGGGGCTC
ATTTATATGCATGAATTAGGCATGTAAAAGTATTACTGATTAATTAATAA
TTATTATTTTATAAACACTCCAGCGACAAAATTGGCGCTAAAAAAACAAT
TTCAAACACAATAAATAAATACTTAAAAATATTCTTATTGAACAAAACAA
ATTGTTCCGTTTGCTAGCTCATATTTTTTCCCCTCAGTTCAAACATCTGT
TCTGCTGAAAACAATAAAAAAACGGTTCAAAATTTTTTATAGTAAAAATT
GACCATTTTGAGCTCCCTTGACCCGCAACAAATACCGGTAGTTGCATAAA
TACGCGGACTAATTTTTAAACGCTGAGATCTCGAGGTTCCGTGACCGGAA
ATAAAAAATTTCAGCCCAAGTAACTCGGTAAATCTTTTGGCTTTGTTTTG
TTTTTCTTACTCGCATCAAACAAAGTCGTTCACAATGAATGACGAGGCCA
AACATCATATGGTTGCCACTCTCCTCCGGTCCGGTAGGTCTGTCAAGGAG
ATAATCAAGGACACTGGATTATCCAGGACTACTGTTTTCAAGGTCCAGAA
GCTTTTCAAGGAGGGAGAAGATCTGAAAGMCCTGCCCATACCTCTGGAAT
GACTCAAGATTGGCTCGCTGCCAACATGCCATTTTGGAACAAAAACCTTT
GGCCACCTCAATCWCCTGATTTGAATCCCCTTGACTACAGTGTGTGGTGA
CAAATTGAGAAGAAGGTCTGTGCTACCCGCTGTCCGAATTTGGACTCATT
GAAGGACAGKGYCAATGAGCAATGGGCAGCCATGGAAGACCATTACATCC
TCAATGTGTGCAAGGCCTTCCACGGGCGCTTGGAGGGTGTCATAGCAGCT
GANNCAAATTGAGAAGAAGGTCTGTGCTACCCGCTGTCCGAATTTGGACT
CATTGAAGGACAGTGTCAATGAGCAATGGGCAGCCATGGAAGACCATTAC
ATCCTCAATGTGTGCAAGGCCTTCCACGGGCGCTTGGAGGGTGTCATAGC
AGCTGATGGCGGKTATATTYAGTAAWTATATTAAATTTNATATCAGAATA
AATCCTTTATTATATAATTCTCAAAAAAAATACGTCATACGAATTTTATT
ACACATTTAATTATTTGCCACAAATAGTCCGCGTATTTATGCAACTACTG
GTATAGTGCTACGAGTCAAAAATTTTACTTTATGTTGTTTTTAGTATTTG
GTTTATCAGTAAAAATATTGTAACCCTTGTTTTAAATATGTTAAGGGTTG
TAAGATGCACTCAATGATTTGCGGTTTACTTTTTGACCACAGATAATGAT
TCTCTTTTTGTTTAACAACTATTAATTAAACTAGGATTACCTTTTACTAA
AGGCGTTGCTTCCCTTTATCCATGTGCAGAGATAAATAAAAATATTAGCC
ARAAAAAAGGAYTGTCCAATAGGTATCTAATGATSCCCTYTATCCACTCA
ATCAAAAAAAAACTTTCTTTACTCTCAATCCTGCTTTTGAAACAGAAACG
CAAGAATGCATTTTAATGGGATATTAACCAGATTTATACTATAATATCCC
CCNNTTATTGGTCAGATAGAGTTGCACCAATTAAGTATACATTATACAAG
GTCTGATGTCAAAGTATTTTCCAATCTGATTAGACAATTTACAAATGATG
TACCTTTATCCTTGAAATCAATTCCTTTGTTTTGTCACAATTGCTAAGTT
TTGTTTGCATCTTGTTTTAGCCCTTGATTTGGTTAACGCTTTACTCGATC
GAAAAGGCTGAATCGTGAGAGTGACAAAGTACAATTTGATTCCGATTTAA
TAATGTTAGCAAGGTAAACTTGAGAAGCCTTGATTCAATCATGTATTGGA
TTTTTTACCTAATGTAAGGACCAGGGAAGCAAACTTTGTACTGCTTTATT
TTTATTAAGTACATAAGTCGTAAATAGTATATTCATCTATGGATATCAGT
ACCTTGTGCATTAAGCATTGCTCGGCTACAAAGATTCTATCCATTTTTCT
GATTGCATCATATAAAATATAGCAAAAAATGCCTTTATTTCTAATATTTT
TTCCGATACCGATACGATGAAGAGATTGGATATTTTATCTGATGTATACG
TTTTCCGATTTGGATCCTATATATTGGAATATACTATATATCCTATATAC
GTCTAGTAGTACTACAATTAATCTATTTGACTTACGAAATGAATTCAATA
TACATATTATATCCAGTCATGTAAATGGTCTAATTTTTTTAGCTTCCCGT
TCTGTTTTGGAGTTGATAATCTGAAGGATGAATTTTCTTTTCCTTAAAAG
TTGTTGTTTTTATTCAATTCTAGAGTTGCAAACTTCCTTTTCCAAATATA
CATTCAATTATGCTCATAACCTGATTGAACATACGTGTGTGCTCTTAAAA
GCGTAACCTTGTGGATTTGTTGTGGAGTTACCATTGTAAGTTCTTGTTGA
ACTCAGAGTAGAATAGGGGATTCAAACAGGAGTTATTCATGCCAATGTCC
TTTTTTATTTCCTACTCCCCCTCTTCCCTTGTCAAAGCTGATTCTAGGTG
ATCTCTTCCAAAACATTCTTCATTGTCATTCTCAGGGTTGCCGTGTTGAT
CTTCGGTTTCTATTTTTTATCATGCCCATTATATGCACGATTCTCATCAC
TAGTTATATGCATATTTCCTTCTCTGGGAGCGACAGGGTATCGAACCTAC
ACACATTGAGTTCATTGTCGTTTATGATAAGTATCACTCCTTATTTCTAC
TCTTTCGGTAAATCATCTATAACTTTTCATGCCAATTTATTTTCCAGAGC
CTGTATCCCTAACAAACTGTTTAATTATATATATATATAGATATAAGAAT
CCCTTTAGAAAAGTGGCTTAATATAGCAAGGTCTCATTTGCCGGAAAAAC
AAAGGATAATATTTTGA
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