EMLSAG00000000487, EMLSAG00000000487-683253 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592953553|gb|GAXK01005000.1| (TSA: Calanus finmarchicus comp349723_c0_seq2 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 1.272e+0 Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0 Query: 150 VFRVEVVGNCCWEAYERKRFRGKFESY--KPGFDTYPEILVKSIRKVHC 196 + RVE GNCCW + R++F+G F+++ G L++SI C Sbjct: 281 LMRVE--GNCCWTVHARRKFKG-FKTFVRSQGELNLSSRLIRSIASTEC 418
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592953542|gb|GAXK01005011.1| (TSA: Calanus finmarchicus comp349723_c0_seq13 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 1.291e+0 Identity = 12/27 (44.44%), Postives = 20/27 (74.07%), Query Frame = 0 Query: 150 VFRVEVVGNCCWEAYERKRFRGKFESY 176 + RVE GNCCW + R++F+G F+++ Sbjct: 281 LMRVE--GNCCWTVHARRKFKG-FKTF 352
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592953545|gb|GAXK01005008.1| (TSA: Calanus finmarchicus comp349723_c0_seq10 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 1.360e+0 Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0 Query: 150 VFRVEVVGNCCWEAYERKRFRGKFESY--KPGFDTYPEILVKSIRKVHC 196 + RVE GNCCW + R++F+G F+++ G L++SI C Sbjct: 241 LMRVE--GNCCWTIHARRKFKG-FKTFVQSQGELNLSSKLIRSIANTEC 378
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592953551|gb|GAXK01005002.1| (TSA: Calanus finmarchicus comp349723_c0_seq4 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 1.562e+0 Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0 Query: 150 VFRVEVVGNCCWEAYERKRFRGKFESY--KPGFDTYPEILVKSIRKVHC 196 + RVE GNCCW + R++F+G F+++ G L++SI C Sbjct: 237 LMRVE--GNCCWTIHARRKFKG-FKTFVQSQGELNLSSKLIRSIANTEC 374
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592953547|gb|GAXK01005006.1| (TSA: Calanus finmarchicus comp349723_c0_seq8 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 1.656e+0 Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0 Query: 150 VFRVEVVGNCCWEAYERKRFRGKFESY--KPGFDTYPEILVKSIRKVHC 196 + RVE GNCCW + R++F+G F+++ G L++SI C Sbjct: 241 LMRVE--GNCCWTIHARRKFKG-FKTFVQSQGELNLSSKLIRSIANTKC 378
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592953548|gb|GAXK01005005.1| (TSA: Calanus finmarchicus comp349723_c0_seq7 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 1.677e+0 Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0 Query: 150 VFRVEVVGNCCWEAYERKRFRGKFESY--KPGFDTYPEILVKSIRKVHC 196 + RVE GNCCW + R++F+G F+++ G L++SI C Sbjct: 268 LMRVE--GNCCWTIHARRKFKG-FKTFVQSQGELNLSSKLIRSIANTKC 405
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592953554|gb|GAXK01004999.1| (TSA: Calanus finmarchicus comp349723_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 1.699e+0 Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0 Query: 150 VFRVEVVGNCCWEAYERKRFRGKFESY--KPGFDTYPEILVKSIRKVHC 196 + RVE GNCCW + R++F+G F+++ G L++SI C Sbjct: 289 LMRVE--GNCCWTVHARRKFKG-FKTFVRSQGELNLSSRLIRSIASTEC 426
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592914891|gb|GAXK01043484.1| (TSA: Calanus finmarchicus comp50519_c1_seq7 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 1.980e+0 Identity = 17/59 (28.81%), Postives = 28/59 (47.46%), Query Frame = 0 Query: 128 ILKTDSFYVSKVHRRRRSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEI 186 +L+ D+ + + S+S SV G+CCW+ + K F G E+ G TY + Sbjct: 170 VLEEDTANLEDISFDNLSVSASV-----SGSCCWQIFSEKNFSGS-ETVLTGQGTYTSV 328
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592953552|gb|GAXK01005001.1| (TSA: Calanus finmarchicus comp349723_c0_seq3 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 2.061e+0 Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0 Query: 150 VFRVEVVGNCCWEAYERKRFRGKFESY--KPGFDTYPEILVKSIRKVHC 196 + RVE GNCCW + R++F+G F+++ G L++SI C Sbjct: 268 LMRVE--GNCCWTIHARRKFKG-FKTFVQSQGELNLSSKLIRSIANTEC 405
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592775135|gb|GAXK01179433.1| (TSA: Calanus finmarchicus comp290090_c1_seq1 transcribed RNA sequence) HSP 1 Score: 29.261 bits (64), Expect = 6.834e+0 Identity = 16/47 (34.04%), Postives = 23/47 (48.94%), Query Frame = 0 Query: 25 CTQLQDCGPVDWLLKNRQSVPSSVGNISELLRNINCGYNENGPKVYC 71 C ++ DC P KNR + +E LR CG++ N PK+ C Sbjct: 329 CVRISDCIP-----KNRFMYITEDRKTTEYLRESACGFDVNTPKICC 454
BLAST of EMLSAG00000000487 vs. L. salmonis peptides
Match: EMLSAP00000000487 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1075:34619:35273:-1 gene:EMLSAG00000000487 transcript:EMLSAT00000000487 description:"maker-LSalAtl2s1075-augustus-gene-0.29") HSP 1 Score: 402.905 bits (1034), Expect = 3.034e-144 Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0 Query: 1 MDFISTSLSFLSLWSFSTEKTSRNCTQLQDCGPVDWLLKNRQSVPSSVGNISELLRNINCGYNENGPKVYCSDEISEFDDEFDEIYDDYDEEASGDYDYNNSSQLRGGVIDGLSMDGSTCQGSAVCYILKTDSFYVSKVHRRRRSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKVHC 196 MDFISTSLSFLSLWSFSTEKTSRNCTQLQDCGPVDWLLKNRQSVPSSVGNISELLRNINCGYNENGPKVYCSDEISEFDDEFDEIYDDYDEEASGDYDYNNSSQLRGGVIDGLSMDGSTCQGSAVCYILKTDSFYVSKVHRRRRSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKVHC Sbjct: 1 MDFISTSLSFLSLWSFSTEKTSRNCTQLQDCGPVDWLLKNRQSVPSSVGNISELLRNINCGYNENGPKVYCSDEISEFDDEFDEIYDDYDEEASGDYDYNNSSQLRGGVIDGLSMDGSTCQGSAVCYILKTDSFYVSKVHRRRRSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKVHC 196
BLAST of EMLSAG00000000487 vs. L. salmonis peptides
Match: EMLSAP00000002218 (pep:novel supercontig:LSalAtl2s:LSalAtl2s141:411139:412003:1 gene:EMLSAG00000002218 transcript:EMLSAT00000002218 description:"maker-LSalAtl2s141-augustus-gene-4.25") HSP 1 Score: 167.933 bits (424), Expect = 3.288e-52 Identity = 85/190 (44.74%), Postives = 120/190 (63.16%), Query Frame = 0 Query: 7 SLSFLSLWSFSTEKTSRNCTQLQDCGPVDWLLKNRQSVPSSVGNISELLRNINCGYNENGPKVYCSDEISEFDDEFDEIYDDYDEEASGDYDYNNSSQLRGGVIDGLSMDGSTCQGSAVCYILKTDSFYVSKVHRRRRSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKVHC 196 +L S W+ T + C ++DC +DWL+KN+ +VP V NI ++L +I CGYNE+ PK+ C+D+I DDE + +S LR GVI G + C GS V + LK ++ +SK+ RR+RSI G VF++EV+GNCCW+AY+RK FRG+FE Y+PGF+ PEI+VKSI+KV C Sbjct: 9 TLFLTSEWTKILAVTYK-CKSIKDCSSLDWLMKNKGNVPFKVSNIFKVLGHIGCGYNESEPKILCTDDIVNADDE------------------DETSALRNGVITGYLENEVGCTGSIVYHELKEKTYSISKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRGEFELYEPGFNICPEIIVKSIKKVDC 179
BLAST of EMLSAG00000000487 vs. L. salmonis peptides
Match: EMLSAP00000007690 (pep:novel supercontig:LSalAtl2s:LSalAtl2s447:466913:467611:-1 gene:EMLSAG00000007690 transcript:EMLSAT00000007690 description:"maker-LSalAtl2s447-augustus-gene-4.44") HSP 1 Score: 70.8626 bits (172), Expect = 1.745e-15 Identity = 56/205 (27.32%), Postives = 88/205 (42.93%), Query Frame = 0 Query: 4 ISTSLSFLSLWSFSTEKT--SRNCTQLQDCGPVDWLLKNRQS-VPSSVGNISELLRNINCGYN--ENGPKVYCSDEISEFDDEFDEIYDDYDEEASGDYDYNNSSQLRGGVIDGLSMDGSTCQGSAV-------CYILKTDSFYVSKVHRRRRSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKVHC 196 IS + S L L+ + NC L +C P+ + LK+R S + I+ +L CG++ +N PKV C D+ +Y + +S + G + + M + V +L +Y + + R VFR+EV+GNCCW+ ER R RGK + GFD P+I KS++ C Sbjct: 7 ISVNFSLLVLFITLERRVEGGSNCIPLTECSPLKYFLKHRGSRIKYDRFRINNILWKKRCGFDPYQNTPKVNCPDK-------------EYPVRETNPVQAKSSGVINGKITRDVCMGSLRIHHNHVRDGSDIKINVLSGRKYYDLIKYLKYR----EVFRIEVIGNCCWKINERTRHRGKTQLLHGGFDDEPDIQPKSVQVFMC 194 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000487 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 21
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BLAST of EMLSAG00000000487 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000000487 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000487 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000487 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000487 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1075:34619..35273- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000487-683253 ID=EMLSAG00000000487-683253|Name=EMLSAG00000000487|organism=Lepeophtheirus salmonis|type=gene|length=655bp|location=Sequence derived from alignment at LSalAtl2s1075:34619..35273- (Lepeophtheirus salmonis)back to top Add to Basket
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