EMLSAG00000000489, EMLSAG00000000489-683255 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000489
Unique NameEMLSAG00000000489-683255
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000489 vs. C. finmarchicus
Match: gi|592758099|gb|GAXK01196314.1| (TSA: Calanus finmarchicus comp596624_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 6.076e+0
Identity = 14/36 (38.89%), Postives = 19/36 (52.78%), Query Frame = 0 
Query:   44 IGNNKKNLLRSYSHEESFVSFLIDGLNSSPTILVPK 79
            I  N  N+L  + H    +SFL   LN S  I+VP+
Sbjct:  736 ISKNLSNILEIFRHSSPIISFLSSALNLSSIIIVPR 843
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BLAST of EMLSAG00000000489 vs. L. salmonis peptides
Match: EMLSAP00000000489 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1075:44264:46432:1 gene:EMLSAG00000000489 transcript:EMLSAT00000000489 description:"maker-LSalAtl2s1075-augustus-gene-0.26")

HSP 1 Score: 379.793 bits (974), Expect = 1.328e-135
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0 
Query:    1 MWTETMAVIPYASRESVICNKCHSPLGYHENDSANFWLHSIKLIGNNKKNLLRSYSHEESFVSFLIDGLNSSPTILVPKIILKGNDLTLCLRVMDTQLNVYQGNHRGSIRLMNAFKLLYGEGSQLPKDELNEWMRYDVRVSILQVPDDVIQNGLCLLEKNKSYAHPDDHDTQGFNVSFLLRE 182
            MWTETMAVIPYASRESVICNKCHSPLGYHENDSANFWLHSIKLIGNNKKNLLRSYSHEESFVSFLIDGLNSSPTILVPKIILKGNDLTLCLRVMDTQLNVYQGNHRGSIRLMNAFKLLYGEGSQLPKDELNEWMRYDVRVSILQVPDDVIQNGLCLLEKNKSYAHPDDHDTQGFNVSFLLRE
Sbjct:    1 MWTETMAVIPYASRESVICNKCHSPLGYHENDSANFWLHSIKLIGNNKKNLLRSYSHEESFVSFLIDGLNSSPTILVPKIILKGNDLTLCLRVMDTQLNVYQGNHRGSIRLMNAFKLLYGEGSQLPKDELNEWMRYDVRVSILQVPDDVIQNGLCLLEKNKSYAHPDDHDTQGFNVSFLLRE 182
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000489 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000489 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592758099|gb|GAXK01196314.1|6.076e+038.89TSA: Calanus finmarchicus comp596624_c0_seq1 trans... [more]
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BLAST of EMLSAG00000000489 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000004891.328e-135100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1075:4426... [more]
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BLAST of EMLSAG00000000489 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000489 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000489 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000489 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1075supercontigLSalAtl2s1075:44264..46432 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1075-augustus-gene-0.26
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000489 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000489EMLSAT00000000489-696336Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1075:44264..46432+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000489-683255 ID=EMLSAG00000000489-683255|Name=EMLSAG00000000489|organism=Lepeophtheirus salmonis|type=gene|length=2169bp|location=Sequence derived from alignment at LSalAtl2s1075:44264..46432+ (Lepeophtheirus salmonis)
ATTTGTGACTACTTAATTATATAAGTATAATATACTGGCTCTTCCCTTCT
AAGTCGCGATATAAAAGTAAACCACATTCCTTTGACGTCATCGGGCTGTA
AATATTTMCTCATSCAGCCGTTACAAAAGGAAGATTCCACGGAATGGGAT
CTATGGGGAGAGTATAGAGGGAGATTTAGCTCTTTCCACGGAATAATTCG
CATCTCATCCCCATTTCAATTCTCTTCCGTCGAGGCCTCTGGCTCCAATG
TAATAGTCAAGGGTGTCCATCGGAAAATTGTTTTAAGTTTTCCTGGAAAT
ATCCAATTTTCGGGGAAACTCATTTATATTCGGACTGGAGATGATCCGAA
TCAAATCCTTTTTGCTCTTCATACTTTGGGATCCAATACATTTGAGGTAG
CTTACTGTTATAAAGTGGAAATTTATATTTATTCATTATTTTTCGCTCAT
TATATTGCTCCATAGGCGGAATTCCAAAAGGAATTTGAGTTGCTTCCATC
TGTGAAGTCACACAAGGAATCGCAAGTCGTAAACAAGTATCCTTTTGTGC
TAGACTCCAATGAAATCGAGAACGTAAATCTATCCTTGCGATGTAAATCA
TGCAACGAGTAAAGACTTCATATATAATAGGAGAATAAAATCCTAATCTT
ATATATTAAAATCTGTCTTTTTGTAGGGAAAGTATATCTCTTGTAGCAAC
ACGAGTTACTGCGTTACCTTCATCGGATTGGAAGGAGGGAGCTGCTTCCT
GGTTTTGTGGTTGTAAGCATGACCCTAGCAAAATTGTTCGATTAGCTGAC
ACAATTAGGGATGGAGTTCTTATGTGGACTGAAACAATGGCCGTCATTCC
ATACGCATCTAGGGAATCCGTCATATGTAACAAATGCCATTCTCCATTAG
GCTATCATGAAAATGATTCAGCAAACTTTTGGTTACACAGTATTAAACTG
ATTGGAAACAATAAGAAAAATCTTTTGAGGTCATATTCTCATGAAGAGTC
CTTCGTTTCCTTCCTCATTGATGGTCTCAACAGTTCTCCCACAATCCTTG
TTCCTAAAATCATTCTAAAAGGAAACGATTTGACCCTATGTCTTCGAGTC
ATGGACACCCAATTAAATGTTTATCAAGGCAATCATCGAGGTTCCATTAG
ATTGATGAATGCGTTTAAGTTACTTTATGGAGAAGGGAGTCAATTACCAA
AAGATGAGCTGAATGAATGGATGCGTTATGATGTTCGAGTTTCAATTTTA
CAAGTTCCTGATGATGTCATTCAAAATGGTCTCTGTCTTCTTGAGAAAAA
TAAGTCTTATGCTCATCCAGATGATCATGATACCCAGGGATTTAATGTTT
CTTTTCTCTTGAGAGAATAATATTTATCCAGTTTTCATTTTTCCTTTATC
AATTAATTATCATTCGAAGATATGGATTATGAATATTGTAAAAATGTAAT
GGATTAACAGAAAAACATAATTATTTGCAATACCAATGACTTTCCCATAG
AGTTGGACCAACCATACGTACTACAATTAACCAAATTAGATAATTTCATG
AAGTGTTAATTTATTTAAGTTACTACAACTGTAAAGATTACAACTACCTT
CTAAGAATACGCTGATGTATTGTGTTTATATAGTGATAATTAATTAATAT
AATTTAAAAGAAATATTTTTTGCAAAAATTTTACTAATTAACTTACCGAT
ATGACATATATAGCCCATGAACAATACCTATTTATCATACTATTTCTATA
TGGTATCACATCGAGAGTCAGGATATGCCAGGGCTTCAGGACGTATTCGA
AGCTGATATAAAGTAAAATATTAATCCACTTTTGTTTCAATAGAATACAG
AAAAAACGCCTTAAAAATGAATTATTTGTCCTCAAAGAGTCTCAATTCTT
TTGCACAGACCGGTATCAATATTAAAAATTGTCTTTTGGTGAAATACCCT
TTGGAAAAATTGTCTTTCGGCGAAATGTACATTTGGCAAAATGGTAAATT
CGGGGCAAGGTTTTCATTGAAAAGTCCACCCGCGCAAAATTATAGTCCGT
TCTTTTCTTTGTCAGTAATCAAACCTACAAAATCGAAAATCCAATAATTA
TTTTCTCCACTGTAGGTAAGTAGGTCGATAATAATTGAATAAACTCTTTA
AATAGCAATTACGTGTAGA
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