EMLSAG00000000493, EMLSAG00000000493-683259 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000493
Unique NameEMLSAG00000000493-683259
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000493 vs. C. finmarchicus
Match: gi|592938392|gb|GAXK01020161.1| (TSA: Calanus finmarchicus comp13458_c2_seq10 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.866e+0
Identity = 13/32 (40.62%), Postives = 18/32 (56.25%), Query Frame = 0 
Query:   12 PCWTVLKNLVNYDVLIRMMIQFVIPVLQNCGF 43
            P   VL+ +   +VL R +I  V+P LQ C F
Sbjct: 2853 PVHQVLQPVALQEVLERFLIVLVVPKLQGCAF 2948
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BLAST of EMLSAG00000000493 vs. C. finmarchicus
Match: gi|592938393|gb|GAXK01020160.1| (TSA: Calanus finmarchicus comp13458_c2_seq9 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.869e+0
Identity = 13/32 (40.62%), Postives = 18/32 (56.25%), Query Frame = 0 
Query:   12 PCWTVLKNLVNYDVLIRMMIQFVIPVLQNCGF 43
            P   VL+ +   +VL R +I  V+P LQ C F
Sbjct: 2918 PVHQVLQPVALQEVLERFLIVLVVPKLQGCAF 3013
[Close]
BLAST of EMLSAG00000000493 vs. C. finmarchicus
Match: gi|592938394|gb|GAXK01020159.1| (TSA: Calanus finmarchicus comp13458_c2_seq8 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.872e+0
Identity = 13/32 (40.62%), Postives = 18/32 (56.25%), Query Frame = 0 
Query:   12 PCWTVLKNLVNYDVLIRMMIQFVIPVLQNCGF 43
            P   VL+ +   +VL R +I  V+P LQ C F
Sbjct: 2997 PVHQVLQPVALQEVLERFLIVLVVPKLQGCAF 3092
[Close]
BLAST of EMLSAG00000000493 vs. C. finmarchicus
Match: gi|592938395|gb|GAXK01020158.1| (TSA: Calanus finmarchicus comp13458_c2_seq7 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.873e+0
Identity = 13/32 (40.62%), Postives = 18/32 (56.25%), Query Frame = 0 
Query:   12 PCWTVLKNLVNYDVLIRMMIQFVIPVLQNCGF 43
            P   VL+ +   +VL R +I  V+P LQ C F
Sbjct: 3013 PVHQVLQPVALQEVLERFLIVLVVPKLQGCAF 3108
[Close]
BLAST of EMLSAG00000000493 vs. C. finmarchicus
Match: gi|592938396|gb|GAXK01020157.1| (TSA: Calanus finmarchicus comp13458_c2_seq6 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.874e+0
Identity = 13/32 (40.62%), Postives = 18/32 (56.25%), Query Frame = 0 
Query:   12 PCWTVLKNLVNYDVLIRMMIQFVIPVLQNCGF 43
            P   VL+ +   +VL R +I  V+P LQ C F
Sbjct: 3036 PVHQVLQPVALQEVLERFLIVLVVPKLQGCAF 3131
[Close]
BLAST of EMLSAG00000000493 vs. C. finmarchicus
Match: gi|592938397|gb|GAXK01020156.1| (TSA: Calanus finmarchicus comp13458_c2_seq5 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.874e+0
Identity = 13/32 (40.62%), Postives = 18/32 (56.25%), Query Frame = 0 
Query:   12 PCWTVLKNLVNYDVLIRMMIQFVIPVLQNCGF 43
            P   VL+ +   +VL R +I  V+P LQ C F
Sbjct: 3052 PVHQVLQPVALQEVLERFLIVLVVPKLQGCAF 3147
[Close]
BLAST of EMLSAG00000000493 vs. C. finmarchicus
Match: gi|592938398|gb|GAXK01020155.1| (TSA: Calanus finmarchicus comp13458_c2_seq4 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.874e+0
Identity = 13/32 (40.62%), Postives = 18/32 (56.25%), Query Frame = 0 
Query:   12 PCWTVLKNLVNYDVLIRMMIQFVIPVLQNCGF 43
            P   VL+ +   +VL R +I  V+P LQ C F
Sbjct: 3062 PVHQVLQPVALQEVLERFLIVLVVPKLQGCAF 3157
[Close]
BLAST of EMLSAG00000000493 vs. C. finmarchicus
Match: gi|592938399|gb|GAXK01020154.1| (TSA: Calanus finmarchicus comp13458_c2_seq3 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.875e+0
Identity = 13/32 (40.62%), Postives = 18/32 (56.25%), Query Frame = 0 
Query:   12 PCWTVLKNLVNYDVLIRMMIQFVIPVLQNCGF 43
            P   VL+ +   +VL R +I  V+P LQ C F
Sbjct: 3078 PVHQVLQPVALQEVLERFLIVLVVPKLQGCAF 3173
[Close]
BLAST of EMLSAG00000000493 vs. C. finmarchicus
Match: gi|592938400|gb|GAXK01020153.1| (TSA: Calanus finmarchicus comp13458_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.876e+0
Identity = 13/32 (40.62%), Postives = 18/32 (56.25%), Query Frame = 0 
Query:   12 PCWTVLKNLVNYDVLIRMMIQFVIPVLQNCGF 43
            P   VL+ +   +VL R +I  V+P LQ C F
Sbjct: 3101 PVHQVLQPVALQEVLERFLIVLVVPKLQGCAF 3196
[Close]
BLAST of EMLSAG00000000493 vs. C. finmarchicus
Match: gi|592938401|gb|GAXK01020152.1| (TSA: Calanus finmarchicus comp13458_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.876e+0
Identity = 13/32 (40.62%), Postives = 18/32 (56.25%), Query Frame = 0 
Query:   12 PCWTVLKNLVNYDVLIRMMIQFVIPVLQNCGF 43
            P   VL+ +   +VL R +I  V+P LQ C F
Sbjct: 3117 PVHQVLQPVALQEVLERFLIVLVVPKLQGCAF 3212
[Close]
BLAST of EMLSAG00000000493 vs. L. salmonis peptides
Match: EMLSAP00000000493 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1076:398335:400148:1 gene:EMLSAG00000000493 transcript:EMLSAT00000000493 description:"snap_masked-LSalAtl2s1076-processed-gene-3.3")

HSP 1 Score: 140.198 bits (352), Expect = 8.065e-45
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 
Query:    1 MEESQKWNTQSPCWTVLKNLVNYDVLIRMMIQFVIPVLQNCGFVGNHCVMALSAKVILRISDMVSKF 67
            MEESQKWNTQSPCWTVLKNLVNYDVLIRMMIQFVIPVLQNCGFVGNHCVMALSAKVILRISDMVSKF
Sbjct:    1 MEESQKWNTQSPCWTVLKNLVNYDVLIRMMIQFVIPVLQNCGFVGNHCVMALSAKVILRISDMVSKF 67
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000493 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000493 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 13
Match NameE-valueIdentityDescription
gi|592938392|gb|GAXK01020161.1|2.866e+040.63TSA: Calanus finmarchicus comp13458_c2_seq10 trans... [more]
gi|592938393|gb|GAXK01020160.1|2.869e+040.63TSA: Calanus finmarchicus comp13458_c2_seq9 transc... [more]
gi|592938394|gb|GAXK01020159.1|2.872e+040.63TSA: Calanus finmarchicus comp13458_c2_seq8 transc... [more]
gi|592938395|gb|GAXK01020158.1|2.873e+040.63TSA: Calanus finmarchicus comp13458_c2_seq7 transc... [more]
gi|592938396|gb|GAXK01020157.1|2.874e+040.63TSA: Calanus finmarchicus comp13458_c2_seq6 transc... [more]
gi|592938397|gb|GAXK01020156.1|2.874e+040.63TSA: Calanus finmarchicus comp13458_c2_seq5 transc... [more]
gi|592938398|gb|GAXK01020155.1|2.874e+040.63TSA: Calanus finmarchicus comp13458_c2_seq4 transc... [more]
gi|592938399|gb|GAXK01020154.1|2.875e+040.63TSA: Calanus finmarchicus comp13458_c2_seq3 transc... [more]
gi|592938400|gb|GAXK01020153.1|2.876e+040.63TSA: Calanus finmarchicus comp13458_c2_seq2 transc... [more]
gi|592938401|gb|GAXK01020152.1|2.876e+040.63TSA: Calanus finmarchicus comp13458_c2_seq1 transc... [more]

Pages

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BLAST of EMLSAG00000000493 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000004938.065e-45100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1076:3983... [more]
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BLAST of EMLSAG00000000493 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000493 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000493 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000493 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1076supercontigLSalAtl2s1076:398335..400148 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1076-processed-gene-3.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000493 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000493EMLSAT00000000493-696340Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1076:398335..400148+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000493-683259 ID=EMLSAG00000000493-683259|Name=EMLSAG00000000493|organism=Lepeophtheirus salmonis|type=gene|length=1814bp|location=Sequence derived from alignment at LSalAtl2s1076:398335..400148+ (Lepeophtheirus salmonis)
ATGGAAGAATCTCAAAAATGGAATACACAAAGTCCATGTTGGACGGTGCT
TAAGAACCTCGTAAGTAAATATCATACATTTAGTAAAATATAGTGTTCTC
TTCTACGAATCGCACCTGAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTCAATTATACACGTCTTGCTATAATTTT
AGTTTTTTGTTTTTTGAATAGATTCCAAAGTTATAAACCAAGTTTCAAAA
CGTAGTCCACGTTATTATTTTTTTTAAATATATTGACTACATAATAACTG
TTCTGTCTATTAGCGGATTGGAGTATGTATGTAAAGTACTCTTCAAAAAA
CACTGAAATCTTCTTAAATTTATCCTCATTACTGAATTAACAAATTGAAT
TCGGCGGAGCGGAGAAAAGTAGCATATATATTATGAGGCACAATGATAAA
AAGACGTTATCTGTTGTCCAATAAAAAGCGAGATCTTGTGTAAGAAGAAT
TTATCAGTAATGAATTAAATCTACTAAAGCTAATCGGCGCGCTGTACTAC
TTTGTTTTAATGGAGACCACGCTGTCTAAGAACAAAGATAATTACTCAGA
TGCCCTTCTTGGACCAATGTAGGATTCATCAAGGTATTTTCTTAAATAAT
TTATTTCATAGATTATGATGTTTTAATCAGAATGATGATACAATTTGTTA
TCCCTGTCCTACAGAATTGTGGTTAATTCATTTATAATCATGGGGAAAAC
ATAATCCTATCTGAACTCAATGTACATCTGTTAACCTTCTATAATATGAT
TTTAATTTTTTGAATATTTAATGTTTTAATGTTTTCTTTAGGATTTGTGG
GAAACCACTGCGTTATGGCTTTATCTGCAAAAGTGATACTAAGAATAAGT
GATATGGTTTCCAAATTTTGAGTACATTTTTCAAGCTACATAGACTTAAT
AGTCAAACTTTTTTTCGAAAAGAATCGATTCCATGAAGATTTTTGGTTCT
CTTTTGAATTTAACAATGCAATAAACAATGTATATTACAAATTAAATTGA
CTATCATTATGTAAATACTTAATGTATTTAAGCATGTGTGCCAAAAATAT
CAAAATATTTGATGTTTGGGATACATTTATTTTTATTTGTCATGGTATGA
CCTTACTACAATCTAAAACACAAAAGGGAACTCAAAACAATTTTTCATCA
AATTCATCATGAAC
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