EMLSAG00000000494, EMLSAG00000000494-683260 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000494 vs. C. finmarchicus
Match: gi|592756275|gb|GAXK01198138.1| (TSA: Calanus finmarchicus comp1353286_c0_seq1 transcribed RNA sequence) HSP 1 Score: 41.9726 bits (97), Expect = 3.122e-5 Identity = 28/79 (35.44%), Postives = 39/79 (49.37%), Query Frame = 0 Query: 23 YEDAKALLAPAPYFANVH--HINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYKMLLQL 99 Y D + L A Y NV + N G D E D D AGS+ VSL + R++ ++YTV+GD + V Y+ Q Sbjct: 125 YADERPLYA---YSYNVKDDYSNNNFGAD----ESRDGEDTAGSYYVSLPDGRLQKVSYTVNGDGGYVVQVSYQGEAQF 340
BLAST of EMLSAG00000000494 vs. C. finmarchicus
Match: gi|592785349|gb|GAXK01169219.1| (TSA: Calanus finmarchicus comp991_c0_seq1 transcribed RNA sequence) HSP 1 Score: 41.2022 bits (95), Expect = 7.649e-5 Identity = 23/65 (35.38%), Postives = 35/65 (53.85%), Query Frame = 0 Query: 30 LAPAPYFANVHHINAESGVDISTVEQCDN-GDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQY 93 LAP PY + S + E D G+VAGSF ++L + R++T TYT + ++ F +V Y Sbjct: 97 LAPQPYAYEYGVADDYSKANFKKAETQDAYGNVAGSFTIALPDGRLQTTTYTATHEAGFVAEVTY 291
BLAST of EMLSAG00000000494 vs. C. finmarchicus
Match: gi|592776562|gb|GAXK01178006.1| (TSA: Calanus finmarchicus comp14256_c0_seq1 transcribed RNA sequence) HSP 1 Score: 40.0466 bits (92), Expect = 1.294e-4 Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0 Query: 46 SGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94 SG + + EQ D +GS++V+L + R + + Y GDS DV Y+ Sbjct: 11 SGANFAQNEQRDGYSTSGSYRVALPDGRTQVVNYHTDGDSGNIQDVTYE 157
BLAST of EMLSAG00000000494 vs. C. finmarchicus
Match: gi|592776558|gb|GAXK01178010.1| (TSA: Calanus finmarchicus comp14256_c0_seq5 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 2.002e-4 Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0 Query: 46 SGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94 SG + + EQ D +GS++V+L + R + + Y GDS DV Y+ Sbjct: 11 SGANFAQNEQRDGYSTSGSYRVALPDGRTQVVNYHTDGDSGNIQDVTYE 157
BLAST of EMLSAG00000000494 vs. C. finmarchicus
Match: gi|592776559|gb|GAXK01178009.1| (TSA: Calanus finmarchicus comp14256_c0_seq4 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 2.152e-4 Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0 Query: 46 SGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94 SG + + EQ D +GS++V+L + R + + Y GDS DV Y+ Sbjct: 11 SGANFAQNEQRDGYSTSGSYRVALPDGRTQVVNYHTDGDSGNIQDVTYE 157
BLAST of EMLSAG00000000494 vs. C. finmarchicus
Match: gi|592776561|gb|GAXK01178007.1| (TSA: Calanus finmarchicus comp14256_c0_seq2 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 2.338e-4 Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0 Query: 46 SGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94 SG + + EQ D +GS++V+L + R + + Y GDS DV Y+ Sbjct: 11 SGANFAQNEQRDGYSTSGSYRVALPDGRTQVVNYHTDGDSGNIQDVTYE 157
BLAST of EMLSAG00000000494 vs. C. finmarchicus
Match: gi|592776557|gb|GAXK01178011.1| (TSA: Calanus finmarchicus comp14256_c0_seq6 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 2.554e-4 Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0 Query: 46 SGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94 SG + + EQ D +GS++V+L + R + + Y GDS DV Y+ Sbjct: 11 SGANFAQNEQRDGYSTSGSYRVALPDGRTQVVNYHTDGDSGNIQDVTYE 157
BLAST of EMLSAG00000000494 vs. C. finmarchicus
Match: gi|592776560|gb|GAXK01178008.1| (TSA: Calanus finmarchicus comp14256_c0_seq3 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 2.771e-4 Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0 Query: 46 SGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94 SG + + EQ D +GS++V+L + R + + Y GDS DV Y+ Sbjct: 11 SGANFAQNEQRDGYSTSGSYRVALPDGRTQVVNYHTDGDSGNIQDVTYE 157
BLAST of EMLSAG00000000494 vs. C. finmarchicus
Match: gi|592776556|gb|GAXK01178012.1| (TSA: Calanus finmarchicus comp14256_c0_seq7 transcribed RNA sequence) HSP 1 Score: 38.1206 bits (87), Expect = 4.117e-4 Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0 Query: 46 SGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94 SG + + EQ D +GS++V+L + R + + Y GDS DV Y+ Sbjct: 11 SGANFAQNEQRDGYSTSGSYRVALPDGRTQVVNYHTDGDSGNIQDVTYE 157
BLAST of EMLSAG00000000494 vs. C. finmarchicus
Match: gi|592844004|gb|GAXK01113540.1| (TSA: Calanus finmarchicus comp94071_c0_seq1 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 4.598e-4 Identity = 17/40 (42.50%), Postives = 25/40 (62.50%), Query Frame = 0 Query: 55 QCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94 Q NG+V GSF ++L + RI+T TYT + F +V Y+ Sbjct: 185 QDQNGNVKGSFVIALPDGRIQTTTYTATEQGGFIAEVTYQ 304
BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Match: EMLSAP00000000494 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1077:68122:71019:1 gene:EMLSAG00000000494 transcript:EMLSAT00000000494 description:"snap_masked-LSalAtl2s1077-processed-gene-0.1") HSP 1 Score: 206.068 bits (523), Expect = 1.021e-69 Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 Query: 1 MCFGLVERLYSTLENILIFEVQYEDAKALLAPAPYFANVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYKMLLQL 99 MCFGLVERLYSTLENILIFEVQYEDAKALLAPAPYFANVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYKMLLQL Sbjct: 1 MCFGLVERLYSTLENILIFEVQYEDAKALLAPAPYFANVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYKMLLQL 99
BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Match: EMLSAP00000007513 (pep:novel supercontig:LSalAtl2s:LSalAtl2s431:235735:236412:-1 gene:EMLSAG00000007513 transcript:EMLSAT00000007513 description:"augustus_masked-LSalAtl2s431-processed-gene-2.0") HSP 1 Score: 62.003 bits (149), Expect = 3.256e-13 Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 0 Query: 43 NAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYKM 95 +AESGVDIS E NGDV GS+KV+L + RI+T+TY V +S F DV+Y++ Sbjct: 155 DAESGVDISAXEXAINGDVEGSYKVALPDGRIQTVTYYVIENSGFVADVKYEV 207
BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Match: EMLSAP00000002964 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1702:3331:3774:-1 gene:EMLSAG00000002964 transcript:EMLSAT00000002964 description:"augustus-LSalAtl2s1702-processed-gene-0.0") HSP 1 Score: 59.6918 bits (143), Expect = 1.321e-12 Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 0 Query: 38 NVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94 N ++ ES VD S E +NG V+GS+KV L + RIKT+TYTV GDS F DVQ++ Sbjct: 73 NYAVLDEESSVDFSADELAENGVVSGSYKVVLPDGRIKTVTYTVEGDSGFVADVQFE 129
BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Match: EMLSAP00000002428 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1463:10232:41558:-1 gene:EMLSAG00000002428 transcript:EMLSAT00000002428 description:"augustus-LSalAtl2s1463-processed-gene-0.3") HSP 1 Score: 58.5362 bits (140), Expect = 2.879e-12 Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 0 Query: 35 YFANVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94 Y N ++ ESGV++S E +NG V+GS+KV L + R+K +TYTV GDS F DVQ++ Sbjct: 43 YGYNYGVVDDESGVNMSADELAENGVVSGSYKVVLPDGRMKIVTYTVEGDSGFVADVQFE 102
BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Match: EMLSAP00000000495 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1077:100747:101118:1 gene:EMLSAG00000000495 transcript:EMLSAT00000000495 description:"augustus-LSalAtl2s1077-processed-gene-0.10") HSP 1 Score: 58.151 bits (139), Expect = 3.178e-12 Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 0 Query: 35 YFANVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94 Y N ++ ESGV++S E +NG V+GS+KV L + R+K +TYTV GDS F DVQ++ Sbjct: 43 YGYNYGVVDDESGVNMSADELAENGVVSGSYKVVLPDGRMKIVTYTVEGDSGFVADVQFE 102
BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Match: EMLSAP00000007669 (pep:novel supercontig:LSalAtl2s:LSalAtl2s446:41257:76039:1 gene:EMLSAG00000007669 transcript:EMLSAT00000007669 description:"augustus-LSalAtl2s446-processed-gene-2.13") HSP 1 Score: 53.5286 bits (127), Expect = 9.258e-10 Identity = 28/72 (38.89%), Postives = 41/72 (56.94%), Query Frame = 0 Query: 23 YEDAKALLAPAPYFANVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94 Y+ A +P PY + SGV+ S E D ++GS+ V+L + RI+T++YTV G S F DVQY+ Sbjct: 124 YQPATYDESPKPYNYQYAVSDDYSGVNFSAEENSDAKVISGSYSVALPDGRIQTVSYTVDGYSGFVADVQYQ 195
BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Match: EMLSAP00000005985 (pep:novel supercontig:LSalAtl2s:LSalAtl2s322:1028992:1029576:1 gene:EMLSAG00000005985 transcript:EMLSAT00000005985 description:"augustus-LSalAtl2s322-processed-gene-9.11") HSP 1 Score: 48.1358 bits (113), Expect = 2.624e-8 Identity = 27/72 (37.50%), Postives = 39/72 (54.17%), Query Frame = 0 Query: 23 YEDAKALLAPAPYFANVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94 Y+ K AP PY + +G + S E D +GS+KV+L + RI+T+TYTV + F DVQY+ Sbjct: 59 YKPTKYKEAPQPYAFQYGVADDYTGSNFSAEENADGKITSGSYKVALPDGRIQTVTYTVDAYNGFVADVQYE 130
BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Match: EMLSAP00000000538 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1088:2159:2548:-1 gene:EMLSAG00000000538 transcript:EMLSAT00000000538 description:"snap_masked-LSalAtl2s1088-processed-gene-0.9") HSP 1 Score: 46.9802 bits (110), Expect = 2.924e-8 Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 0 Query: 46 SGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94 SGV + E D V GS++V+L ++RI+ +TYTV GDS F +V+Y+ Sbjct: 50 SGVKLRAEESSDAKVVKGSYEVALPDSRIQKVTYTVDGDSGFVANVKYE 98
BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Match: EMLSAP00000005986 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3234:38195:38554:1 gene:EMLSAG00000005986 transcript:EMLSAT00000005986 description:"augustus_masked-LSalAtl2s3234-processed-gene-0.0") HSP 1 Score: 46.2098 bits (108), Expect = 5.221e-8 Identity = 24/61 (39.34%), Postives = 33/61 (54.10%), Query Frame = 0 Query: 34 PYFANVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94 PY + SG D S E D V+GS++V L + R+K +TY V G S F DV+Y+ Sbjct: 45 PYSYQYAVQDGPSGNDFSAQESSDGQVVSGSYRVLLPDGRVKVVTYEVEGGSGFVADVKYE 105
BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Match: EMLSAP00000012059 (pep:novel supercontig:LSalAtl2s:LSalAtl2s85:1250196:1251194:1 gene:EMLSAG00000012059 transcript:EMLSAT00000012059 description:"snap-LSalAtl2s85-processed-gene-11.56") HSP 1 Score: 45.8246 bits (107), Expect = 1.321e-7 Identity = 21/49 (42.86%), Postives = 30/49 (61.22%), Query Frame = 0 Query: 46 SGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94 SG + S E D GS+KV+L + RI+T++YTV + F DVQY+ Sbjct: 66 SGSNFSAEENADGKITTGSYKVALPDGRIQTVSYTVDAYNGFVADVQYE 114
BLAST of EMLSAG00000000494 vs. nr
Match: gi|155966360|gb|ABU41132.1| (putative cuticle protein, partial [Lepeophtheirus salmonis]) HSP 1 Score: 75.485 bits (184), Expect = 1.270e-15 Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0 Query: 42 INAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94 ++AESGVDIS EQ DNG V+GS+KV+L + RIKT+TYTV GDS F DVQY+ Sbjct: 35 LDAESGVDISADEQADNGAVSGSYKVALPDGRIKTVTYTVEGDSGFVADVQYE 87
BLAST of EMLSAG00000000494 vs. nr
Match: gi|225714482|gb|ACO13087.1| (Repetitive proline-rich cell wall protein 2 precursor [Lepeophtheirus salmonis]) HSP 1 Score: 67.0106 bits (162), Expect = 1.826e-11 Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 0 Query: 43 NAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYKM 95 +AESGVDIS EQ NGDV GS+KV+L + RI+T+TY V G+S F DV+Y++ Sbjct: 155 DAESGVDISADEQAINGDVEGSYKVALPDGRIQTVTYYVIGNSGFVADVKYEV 207
BLAST of EMLSAG00000000494 vs. nr
Match: gi|155966284|gb|ABU41095.1| (putative cuticle protein [Lepeophtheirus salmonis]) HSP 1 Score: 61.2326 bits (147), Expect = 8.745e-10 Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 0 Query: 33 APYFANVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94 A Y N ++ ES VD S E +NG V+GS+KV L + RIKT+TYTV GDS F DVQ++ Sbjct: 67 ASYAYNYAVLDEESSVDFSADELAENGVVSGSYKVVLPDGRIKTVTYTVEGDSGFVADVQFE 128
BLAST of EMLSAG00000000494 vs. nr
Match: gi|155966124|gb|ABU41017.1| (BCS-1-like protein, partial [Lepeophtheirus salmonis]) HSP 1 Score: 55.0694 bits (131), Expect = 2.543e-7 Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0 Query: 38 NVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDV 91 N ++AESG D S EQ + G V+G +KV L++ +I T++YTV GDS F D+ Sbjct: 64 NYAVLDAESGNDFSAEEQAEGGIVSGEYKVKLADGKIMTVSYTVEGDSGFVADI 117
BLAST of EMLSAG00000000494 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1142_size59991-snap-gene-0.14 (protein:Tk01293 transcript:maker-scaffold1142_size59991-snap-gene-0.14-mRNA-1 annotation:"bcs-1 protein") HSP 1 Score: 43.1282 bits (100), Expect = 7.199e-7 Identity = 19/48 (39.58%), Postives = 32/48 (66.67%), Query Frame = 0 Query: 46 SGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQY 93 S +D + E+ + +GS++V L + R +T+TY+V+GDS + DVQY Sbjct: 53 SQLDFNANEEREGYATSGSYQVLLPDGRTQTVTYSVNGDSGYVADVQY 100 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000494 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000494 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 12
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BLAST of EMLSAG00000000494 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000494 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000494 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 4
BLAST of EMLSAG00000000494 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1077:68122..71019+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000494-683260 ID=EMLSAG00000000494-683260|Name=EMLSAG00000000494|organism=Lepeophtheirus salmonis|type=gene|length=2898bp|location=Sequence derived from alignment at LSalAtl2s1077:68122..71019+ (Lepeophtheirus salmonis)back to top Add to Basket
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