EMLSAG00000000501, EMLSAG00000000501-683267 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000501 vs. C. finmarchicus
Match: gi|592941422|gb|GAXK01017131.1| (TSA: Calanus finmarchicus comp73032_c0_seq1 transcribed RNA sequence) HSP 1 Score: 26.1794 bits (56), Expect = 6.858e+0 Identity = 10/29 (34.48%), Postives = 19/29 (65.52%), Query Frame = 0 Query: 4 NGETPSSRRARSEGPIHRIPLLSTVPLKS 32 +G T + ++EGP+HR+ LL V +++ Sbjct: 1292 SGPTVGRPKVQAEGPVHRVLLLCQVEVRA 1378
BLAST of EMLSAG00000000501 vs. C. finmarchicus
Match: gi|592831097|gb|GAXK01126447.1| (TSA: Calanus finmarchicus comp47973_c0_seq6 transcribed RNA sequence) HSP 1 Score: 25.7942 bits (55), Expect = 8.751e+0 Identity = 19/48 (39.58%), Postives = 26/48 (54.17%), Query Frame = 0 Query: 4 NGETPSSRRARSEG-PIH---RIPLLSTVPLKSNNTGSTSGKRDDKKT 47 +G+ P + R EG PIH R+P LSTVPL T + + D+ T Sbjct: 1276 DGQDPPTSR---EGQPIHTP*RVPSLSTVPLLGCQTVQNTAQGADRVT 1410
BLAST of EMLSAG00000000501 vs. C. finmarchicus
Match: gi|592831098|gb|GAXK01126446.1| (TSA: Calanus finmarchicus comp47973_c0_seq5 transcribed RNA sequence) HSP 1 Score: 25.7942 bits (55), Expect = 8.756e+0 Identity = 19/48 (39.58%), Postives = 26/48 (54.17%), Query Frame = 0 Query: 4 NGETPSSRRARSEG-PIH---RIPLLSTVPLKSNNTGSTSGKRDDKKT 47 +G+ P + R EG PIH R+P LSTVPL T + + D+ T Sbjct: 1293 DGQDPPTSR---EGQPIHTP*RVPSLSTVPLLGCQTVQNTAQGADRVT 1427
BLAST of EMLSAG00000000501 vs. C. finmarchicus
Match: gi|592831099|gb|GAXK01126445.1| (TSA: Calanus finmarchicus comp47973_c0_seq4 transcribed RNA sequence) HSP 1 Score: 25.7942 bits (55), Expect = 8.814e+0 Identity = 19/48 (39.58%), Postives = 26/48 (54.17%), Query Frame = 0 Query: 4 NGETPSSRRARSEG-PIH---RIPLLSTVPLKSNNTGSTSGKRDDKKT 47 +G+ P + R EG PIH R+P LSTVPL T + + D+ T Sbjct: 1500 DGQDPPTSR---EGQPIHTP*RVPSLSTVPLLGCQTVQNTAQGADRVT 1634
BLAST of EMLSAG00000000501 vs. C. finmarchicus
Match: gi|592831100|gb|GAXK01126444.1| (TSA: Calanus finmarchicus comp47973_c0_seq3 transcribed RNA sequence) HSP 1 Score: 25.7942 bits (55), Expect = 8.818e+0 Identity = 19/48 (39.58%), Postives = 26/48 (54.17%), Query Frame = 0 Query: 4 NGETPSSRRARSEG-PIH---RIPLLSTVPLKSNNTGSTSGKRDDKKT 47 +G+ P + R EG PIH R+P LSTVPL T + + D+ T Sbjct: 1517 DGQDPPTSR---EGQPIHTP*RVPSLSTVPLLGCQTVQNTAQGADRVT 1651
BLAST of EMLSAG00000000501 vs. C. finmarchicus
Match: gi|592831101|gb|GAXK01126443.1| (TSA: Calanus finmarchicus comp47973_c0_seq2 transcribed RNA sequence) HSP 1 Score: 25.7942 bits (55), Expect = 8.859e+0 Identity = 19/48 (39.58%), Postives = 26/48 (54.17%), Query Frame = 0 Query: 4 NGETPSSRRARSEG-PIH---RIPLLSTVPLKSNNTGSTSGKRDDKKT 47 +G+ P + R EG PIH R+P LSTVPL T + + D+ T Sbjct: 1691 DGQDPPTSR---EGQPIHTP*RVPSLSTVPLLGCQTVQNTAQGADRVT 1825
BLAST of EMLSAG00000000501 vs. C. finmarchicus
Match: gi|592831102|gb|GAXK01126442.1| (TSA: Calanus finmarchicus comp47973_c0_seq1 transcribed RNA sequence) HSP 1 Score: 25.7942 bits (55), Expect = 8.863e+0 Identity = 19/48 (39.58%), Postives = 26/48 (54.17%), Query Frame = 0 Query: 4 NGETPSSRRARSEG-PIH---RIPLLSTVPLKSNNTGSTSGKRDDKKT 47 +G+ P + R EG PIH R+P LSTVPL T + + D+ T Sbjct: 1708 DGQDPPTSR---EGQPIHTP*RVPSLSTVPLLGCQTVQNTAQGADRVT 1842
BLAST of EMLSAG00000000501 vs. C. finmarchicus
Match: gi|592822756|gb|GAXK01131812.1| (TSA: Calanus finmarchicus comp160712_c6_seq2 transcribed RNA sequence) HSP 1 Score: 25.7942 bits (55), Expect = 8.923e+0 Identity = 11/30 (36.67%), Postives = 18/30 (60.00%), Query Frame = 0 Query: 16 EGPIHRIPLLSTVPLKSNNTGSTSGKRDDK 45 +G +HRI LL+T+ + + GK DD+ Sbjct: 1037 QGSLHRIELLNTLETEGLKRDNLDGKEDDQ 1126
BLAST of EMLSAG00000000501 vs. C. finmarchicus
Match: gi|592822757|gb|GAXK01131811.1| (TSA: Calanus finmarchicus comp160712_c6_seq1 transcribed RNA sequence) HSP 1 Score: 25.7942 bits (55), Expect = 9.141e+0 Identity = 11/30 (36.67%), Postives = 18/30 (60.00%), Query Frame = 0 Query: 16 EGPIHRIPLLSTVPLKSNNTGSTSGKRDDK 45 +G +HRI LL+T+ + + GK DD+ Sbjct: 1037 QGSLHRIELLNTLETEGLKRDNLDGKEDDQ 1126
BLAST of EMLSAG00000000501 vs. L. salmonis peptides
Match: EMLSAP00000000501 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1079:22787:36043:1 gene:EMLSAG00000000501 transcript:EMLSAT00000000501 description:"maker-LSalAtl2s1079-snap-gene-0.26") HSP 1 Score: 95.1301 bits (235), Expect = 1.135e-27 Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 Query: 1 MFSNGETPSSRRARSEGPIHRIPLLSTVPLKSNNTGSTSGKRDDKKT 47 MFSNGETPSSRRARSEGPIHRIPLLSTVPLKSNNTGSTSGKRDDKKT Sbjct: 1 MFSNGETPSSRRARSEGPIHRIPLLSTVPLKSNNTGSTSGKRDDKKT 47 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000501 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000501 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 9
BLAST of EMLSAG00000000501 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000501 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000501 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000501 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000501 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1079:22787..36043+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000501-683267 ID=EMLSAG00000000501-683267|Name=EMLSAG00000000501|organism=Lepeophtheirus salmonis|type=gene|length=13257bp|location=Sequence derived from alignment at LSalAtl2s1079:22787..36043+ (Lepeophtheirus salmonis)back to top Add to Basket
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