EMLSAG00000000536, EMLSAG00000000536-683302 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000536
Unique NameEMLSAG00000000536-683302
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000536 vs. C. finmarchicus
Match: gi|592918338|gb|GAXK01040037.1| (TSA: Calanus finmarchicus comp1097378_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.538e+0
Identity = 13/32 (40.62%), Postives = 19/32 (59.38%), Query Frame = 0 
Query:   63 FGSSEASRYYQMHQAYETAANQARMSMYRPHW 94
            FG +   RY+QM ++ +T     R+S YRP W
Sbjct:  155 FGRTIWRRYFQMLRSGKTKYMFQRVSRYRPRW 250
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BLAST of EMLSAG00000000536 vs. L. salmonis peptides
Match: EMLSAP00000000536 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1088:112569:114055:1 gene:EMLSAG00000000536 transcript:EMLSAT00000000536 description:"maker-LSalAtl2s1088-snap-gene-1.13")

HSP 1 Score: 276.559 bits (706), Expect = 3.117e-96
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 
Query:    1 MMTMAPGMEGHHTPSSHGVSGGGSSSPSRAWYSTVDPSRYPHEHAAAAQGLLAPEHHGETAFFGSSEASRYYQMHQAYETAANQARMSMYRPHWMPNMSGXSAXHVAVQQQQQQHQQQQSWSGGSNSNNPSSSLTPSREPA 141
            MMTMAPGMEGHHTPSSHGVSGGGSSSPSRAWYSTVDPSRYPHEHAAAAQGLLAPEHHGETAFFGSSEASRYYQMHQAYETAANQARMSMYRPHWMPNMSGXSAXHVAVQQQQQQHQQQQSWSGGSNSNNPSSSLTPSREPA
Sbjct:    1 MMTMAPGMEGHHTPSSHGVSGGGSSSPSRAWYSTVDPSRYPHEHAAAAQGLLAPEHHGETAFFGSSEASRYYQMHQAYETAANQARMSMYRPHWMPNMSGXSAXHVAVQQQQQQHQQQQSWSGGSNSNNPSSSLTPSREPA 141
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BLAST of EMLSAG00000000536 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold58_size443543-snap-gene-3.20 (protein:Tk00706 transcript:maker-scaffold58_size443543-snap-gene-3.20-mRNA-1 annotation:"gata-binding factor 2")

HSP 1 Score: 60.077 bits (144), Expect = 1.161e-11
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 0 
Query:   67 EASRYYQMHQAYETAANQ-ARMSMYRPHWMP 96
            EASRYYQMHQAYE+AA Q ARMSMYRPHWMP
Sbjct:   43 EASRYYQMHQAYESAATQAARMSMYRPHWMP 73
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000536 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000536 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592918338|gb|GAXK01040037.1|1.538e+040.63TSA: Calanus finmarchicus comp1097378_c0_seq3 tran... [more]
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BLAST of EMLSAG00000000536 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000005363.117e-96100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1088:1125... [more]
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BLAST of EMLSAG00000000536 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000536 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000536 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000536 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold58_size443543-snap-gene-3.201.161e-1190.32protein:Tk00706 transcript:maker-scaffold58_size44... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1088supercontigLSalAtl2s1088:112569..114055 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1088-snap-gene-1.13
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000536 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000536EMLSAT00000000536-696383Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1088:112569..114055+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000536-683302 ID=EMLSAG00000000536-683302|Name=EMLSAG00000000536|organism=Lepeophtheirus salmonis|type=gene|length=1487bp|location=Sequence derived from alignment at LSalAtl2s1088:112569..114055+ (Lepeophtheirus salmonis)
CTATGACTCTGTGACGTGAGACCCTTCGGTCTTCTTTGCCTACTCCTACG
AAGTTTTGTGTGCTCCTCTTTTCCTTCGTCTCATATGAGTTCGAGTTTTG
AAGAGAGATGAACCTTACTTAATAATAATAAGAGAGGAGAATCAGTTTAA
CAGTGTAATTAGATTTATATGTACATTCACATTTTATTTTGGCGAAAAAA
TAATTGAATTACTTCTTGACCCTATCATTAGTCCGTATATTATTTCTACA
AAGTAGTGAAGTGTGTTTTATCATTCTCTTATTCGATACGGAACCTATAC
ATATATATCGATAAAGGAAATAAGGGTTCAAAAAGGATCTTTGCAAAAAA
AAAAAAAAGTTTTGAATCAGACTTCAATTATTAGAAAACCAGGTAAGCTG
ACAAATCTTTAAGAAATTAATTGCTTCCCTACTGACGTTTCCATGGAATA
TTGAGTCCTGTATATGAATAACTCATGATCAGAAAAGTGGATTTCAATGT
ATCTATAAATATTTGATTCTTTACTCCATGTTTCTTTTTCCTTCTTTGAA
GGAAGCGAAAGGGGATTCAGAAGCTAGCCCTGATCTGTAAGTCCTCTTGA
TGCCCTTTCACAAAGTATGATGACCATGGCTCCGGGAATGGAGGGTCATC
ATACCCCGTCATCTCATGGKGTGTCTGGAGGAGGTTCCTCATCACCCTCA
AGAGCCTGGTATTCGACTGTGGATCCAAGTCGTTATCCACATGAGCATGC
TGCAGCGGCTCAAGGTCTCTTGGCTCCGGAGCACCACGGAGAAACCGCGT
TCTTTGGATCCTCTGAGGCATCACGATACTATCAAATGCATCAAGCCTAC
GAAACGGCTGCGAATCAAGGTAAATCCATGATTTTTAAGCAATCTGTTAG
CCTTGTTAAATAATAGTTTGCAAGAGATATTCTTTCTACATTATAAATAT
GTATATGCAATATTGTAAATTCTACACCACTTCCAAACCTCTCTTCTTTT
TATTCGACTTGTTTATAATAGTGAATGTGTATATGCTATGTATATAATGT
ATATTTGATTATTATCTCAATGTAATTTTCAGTTTTTATTTTTACTCTCT
CTCTCTCTCTCTCTTTCTCTGTACAACAACAATAATAATAATAATAACAT
AATGATAAAAGAACAAAGTACTGAGGCTTACAGCTGCCTCCGTATTCTAT
ATGCATATATATACATATTCATACGTTTAGAGACAATATTTATGACTAGA
AAAGTCCTCTTAATTATGTTTTATGTATCTACAAAACCAATTCTTATGTT
TTAAAACTGATTTCCAGCTCGAATGTCTATGTATCGCCCACATTGGATGC
CAAACATGTCAGGAAMCTCGGCGGMCCATGTTGCTGTTCAACAGCAGCAG
CAGCAGCATCAGCAACAGCAAAGTTGGTCCGGCGGCTCAAACAGTAACAA
TCCGTCGTCATCGTTAACCCCTTCCCGTGAGCCAGCC
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