EMLSAG00000000546, EMLSAG00000000546-683312 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000546 vs. GO
Match: - (symbol:Gabrp "gamma-aminobutyric acid (GABA) A receptor, pi" species:10090 "Mus musculus" [GO:0004890 "GABA-A receptor activity" evidence=ISO] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0005254 "chloride channel activity" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0006811 "ion transport" evidence=IEA] [GO:0006821 "chloride transport" evidence=IEA] [GO:0007165 "signal transduction" evidence=ISO] [GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0030054 "cell junction" evidence=IEA] [GO:0034707 "chloride channel complex" evidence=IEA] [GO:0045202 "synapse" evidence=IEA] [GO:0045211 "postsynaptic membrane" evidence=IEA] InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 InterPro:IPR008100 Pfam:PF02931 Pfam:PF02932 PRINTS:PR00252 PRINTS:PR00253 PRINTS:PR01724 InterPro:IPR018000 MGI:MGI:2387597 GO:GO:0007165 GO:GO:0030054 GO:GO:0045211 GO:GO:0005230 GO:GO:0004890 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 PROSITE:PS00236 GO:GO:0034707 GO:GO:0005254 GO:GO:1902476 HOVERGEN:HBG051707 TreeFam:TF315453 ChEMBL:CHEMBL2094133 HOGENOM:HOG000231335 OrthoDB:EOG712TVZ GeneTree:ENSGT00630000089571 CTD:2568 eggNOG:NOG255582 KO:K05189 OMA:NDVEFSW EMBL:AK028946 EMBL:AK160577 EMBL:AL669814 EMBL:BC023693 EMBL:BC025550 EMBL:BC027245 EMBL:BC031196 RefSeq:NP_666129.1 UniGene:Mm.99989 ProteinModelPortal:Q8QZW7 SMR:Q8QZW7 STRING:10090.ENSMUSP00000020366 BindingDB:Q8QZW7 PhosphoSite:Q8QZW7 PRIDE:Q8QZW7 Ensembl:ENSMUST00000020366 GeneID:216643 KEGG:mmu:216643 UCSC:uc007ikm.1 InParanoid:Q8QZW7 NextBio:375250 PRO:PR:Q8QZW7 ArrayExpress:Q8QZW7 Bgee:Q8QZW7 CleanEx:MM_GABRP Genevestigator:Q8QZW7 Uniprot:Q8QZW7) HSP 1 Score: 43.8986 bits (102), Expect = 1.091e-4 Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 0 Query: 38 VELELVGKLWLXDSEILRLKS--FHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 ++ LV LW+ D+ I+ K H ++V +RL L+ +L+ L C M+ +K+PMDTQTCK Q Sbjct: 107 LDARLVEFLWVPDTYIVESKKSFLHEVTVGNRLIRLFSN--GTVLYALRITTTVTCNMDLSKYPMDTQTCKLQ 177
BLAST of EMLSAG00000000546 vs. GO
Match: - (symbol:GABRP "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0004890 "GABA-A receptor activity" evidence=IEA] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0030054 "cell junction" evidence=IEA] [GO:0045202 "synapse" evidence=IEA] InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 InterPro:IPR008100 Pfam:PF02931 Pfam:PF02932 PRINTS:PR00252 PRINTS:PR00253 PRINTS:PR01724 InterPro:IPR018000 GO:GO:0016021 GO:GO:0005886 GO:GO:0007165 GO:GO:0030054 GO:GO:0045202 GO:GO:0005230 GO:GO:0004890 GO:GO:0034220 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 PROSITE:PS00236 TreeFam:TF315453 OrthoDB:EOG712TVZ GeneTree:ENSGT00630000089571 CTD:2568 KO:K05189 EMBL:AADN03006687 RefSeq:XP_004944832.1 RefSeq:XP_004944833.1 RefSeq:XP_414507.3 Ensembl:ENSGALT00000003373 GeneID:416174 KEGG:gga:416174 Uniprot:F1NY45) HSP 1 Score: 43.1282 bits (100), Expect = 2.010e-4 Identity = 28/73 (38.36%), Postives = 42/73 (57.53%), Query Frame = 0 Query: 38 VELELVGKLWLXDSEILRLK-SF-HSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 ++ LV LW+ D+ I+ K SF H ++V +RL L+ IL+ L C M+ +K+PMDTQTC+ Q Sbjct: 106 LDARLVELLWVPDTYIVESKRSFLHDVTVGNRLIRLFSN--GTILYALRITTTVACNMDLSKYPMDTQTCRLQ 176
BLAST of EMLSAG00000000546 vs. GO
Match: - (symbol:ort "ora transientless" species:7227 "Drosophila melanogaster" [GO:0019182 "histamine-gated chloride channel activity" evidence=ISS;IDA;NAS] [GO:0019183 "histamine-gated chloride channel complex" evidence=IDA;NAS] [GO:0016021 "integral component of membrane" evidence=ISM] [GO:0006821 "chloride transport" evidence=IDA] [GO:0007268 "synaptic transmission" evidence=IMP] [GO:0045472 "response to ether" evidence=IMP] [GO:0009636 "response to toxic substance" evidence=IMP] [GO:0030534 "adult behavior" evidence=IMP] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0043052 "thermotaxis" evidence=IMP] InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 Pfam:PF02931 Pfam:PF02932 PRINTS:PR00252 PRINTS:PR00253 InterPro:IPR018000 GO:GO:0016021 GO:GO:0005886 GO:GO:0007268 GO:GO:0009636 GO:GO:0030054 GO:GO:0045202 GO:GO:0005230 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 PROSITE:PS00236 GO:GO:0030534 GO:GO:0043052 GO:GO:0045472 OrthoDB:EOG712TVZ eggNOG:NOG295166 ChiTaRS:oc EMBL:AY672639 ProteinModelPortal:A1KYB3 SMR:A1KYB3 PRIDE:A1KYB3 FlyBase:FBgn0003011 InParanoid:A1KYB3 Bgee:A1KYB3 GO:GO:0019182 Uniprot:A1KYB3) HSP 1 Score: 41.5874 bits (96), Expect = 6.714e-4 Identity = 22/89 (24.72%), Postives = 47/89 (52.81%), Query Frame = 0 Query: 22 NNSIEFNEELLDLWQPVELELVGKLWLXDSEILRLKS--FHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 ++ + E + ++ +E++ + +W DS KS F ++++ + +W+ IL+++ ++ C MN+A +P DTQ CK Q Sbjct: 86 DHRLRLPENMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHY--MWLYKDKTILYMVKLTLKLSCIMNFAIYPHDTQECKLQ 172
BLAST of EMLSAG00000000546 vs. C. finmarchicus
Match: gi|592760233|gb|GAXK01194180.1| (TSA: Calanus finmarchicus comp1891503_c0_seq6 transcribed RNA sequence) HSP 1 Score: 72.7886 bits (177), Expect = 4.202e-16 Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 0 Query: 26 EFNEEL-LDLWQPV---ELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 FN+ L D QP+ L ++ LW+ D EI L+SF + ++L +L+G W+ ++ LA+RI F+CPM + FPMD Q C FQ Sbjct: 67 NFNQSLHQDNSQPLTALNLAILKDLWMPDVEIRNLQSFQTHTILSKLEGFWVDDEQNLMHALASRITFICPMRFNSFPMDVQVCTFQ 327
BLAST of EMLSAG00000000546 vs. C. finmarchicus
Match: gi|592760234|gb|GAXK01194179.1| (TSA: Calanus finmarchicus comp1891503_c0_seq5 transcribed RNA sequence) HSP 1 Score: 72.7886 bits (177), Expect = 4.379e-16 Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 0 Query: 26 EFNEEL-LDLWQPV---ELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 FN+ L D QP+ L ++ LW+ D EI L+SF + ++L +L+G W+ ++ LA+RI F+CPM + FPMD Q C FQ Sbjct: 67 NFNQSLHQDNSQPLTALNLAILKDLWMPDVEIRNLQSFQTHTILSKLEGFWVDDEQNLMHALASRITFICPMRFNSFPMDVQVCTFQ 327
BLAST of EMLSAG00000000546 vs. C. finmarchicus
Match: gi|592894718|gb|GAXK01063657.1| (TSA: Calanus finmarchicus comp375117_c0_seq7 transcribed RNA sequence) HSP 1 Score: 75.0998 bits (183), Expect = 9.491e-16 Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 0 Query: 37 PVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 PV+L L+ LW+ + I LK+F + VL RL GLW++ +++ A++I F+CPM + FP+DTQ CKFQ Sbjct: 518 PVDLNLIKDLWVPNVFIYNLKTFKVIDVLSRLAGLWVSPNKDVMYSQASQITFICPMIFNYFPLDTQVCKFQ 733
BLAST of EMLSAG00000000546 vs. C. finmarchicus
Match: gi|592894720|gb|GAXK01063655.1| (TSA: Calanus finmarchicus comp375117_c0_seq5 transcribed RNA sequence) HSP 1 Score: 74.7146 bits (182), Expect = 1.138e-15 Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 0 Query: 37 PVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 PV+L L+ LW+ + I LK+F + VL RL GLW++ +++ A++I F+CPM + FP+DTQ CKFQ Sbjct: 518 PVDLNLIKDLWVPNVFIYNLKTFKVIDVLSRLAGLWVSPNKDVMYSQASQITFICPMIFNYFPLDTQVCKFQ 733
BLAST of EMLSAG00000000546 vs. C. finmarchicus
Match: gi|592894723|gb|GAXK01063652.1| (TSA: Calanus finmarchicus comp375117_c0_seq2 transcribed RNA sequence) HSP 1 Score: 75.0998 bits (183), Expect = 1.403e-15 Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 0 Query: 37 PVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 PV+L L+ LW+ + I LK+F + VL RL GLW++ +++ A++I F+CPM + FP+DTQ CKFQ Sbjct: 518 PVDLNLIKDLWVPNVFIYNLKTFKVIDVLSRLAGLWVSPNKDVMYSQASQITFICPMIFNYFPLDTQVCKFQ 733
BLAST of EMLSAG00000000546 vs. L. salmonis peptides
Match: EMLSAP00000000546 (pep:novel supercontig:LSalAtl2s:LSalAtl2s108:207826:219456:1 gene:EMLSAG00000000546 transcript:EMLSAT00000000546 description:"snap_masked-LSalAtl2s108-processed-gene-3.2") HSP 1 Score: 239.195 bits (609), Expect = 2.772e-82 Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 Query: 1 MILQFNADPEEEGAPDTYIFTNNSIEFNEELLDLWQPVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQDILKIDLLT 117 MILQFNADPEEEGAPDTYIFTNNSIEFNEELLDLWQPVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQDILKIDLLT Sbjct: 1 MILQFNADPEEEGAPDTYIFTNNSIEFNEELLDLWQPVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQDILKIDLLT 117
BLAST of EMLSAG00000000546 vs. L. salmonis peptides
Match: EMLSAP00000003314 (pep:novel supercontig:LSalAtl2s:LSalAtl2s181:427820:487404:-1 gene:EMLSAG00000003314 transcript:EMLSAT00000003314 description:"augustus_masked-LSalAtl2s181-processed-gene-4.3") HSP 1 Score: 89.3521 bits (220), Expect = 5.463e-22 Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 0 Query: 30 ELLDLWQPVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 E D W PV++ + + WL D+EIL LK F +L VL +L+GLW+ I++ +ATRI F+CPM + FP+D Q C+FQ Sbjct: 136 EDADSWIPVDVSFIKEFWLPDAEILNLKEFKTLDVLSKLEGLWLNRNFEIMYAVATRITFICPMTFNSFPLDVQVCRFQ 214
BLAST of EMLSAG00000000546 vs. L. salmonis peptides
Match: EMLSAP00000003185 (pep:novel supercontig:LSalAtl2s:LSalAtl2s176:68925:134641:-1 gene:EMLSAG00000003185 transcript:EMLSAT00000003185 description:"maker-LSalAtl2s176-augustus-gene-1.7") HSP 1 Score: 78.9518 bits (193), Expect = 3.785e-18 Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 0 Query: 37 PVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 PV LELV +LWL + I LK+F + VL + GLW+T IL+ AT I F+CPM + FP+DTQ CKFQ Sbjct: 112 PVNLELVNELWLPNIFIYNLKTFKVVEVLSKHAGLWITSEKDILYSQATHITFICPMRFDAFPLDTQRCKFQ 183
BLAST of EMLSAG00000000546 vs. L. salmonis peptides
Match: EMLSAP00000003313 (pep:novel supercontig:LSalAtl2s:LSalAtl2s181:399664:401012:-1 gene:EMLSAG00000003313 transcript:EMLSAT00000003313 description:"maker-LSalAtl2s181-augustus-gene-4.10") HSP 1 Score: 78.1814 bits (191), Expect = 5.536e-18 Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 0 Query: 38 VELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 + +++ KLWLXD EIL L SF +LSVL +L+G+W+ +++ LATRI +C M + FPMD Q CKFQ Sbjct: 112 INSKIIEKLWLXDVEILNLSSFETLSVLSKLEGVWIGENSELMYSLATRITIICRMKFNAFPMDIQVCKFQ 182
BLAST of EMLSAG00000000546 vs. L. salmonis peptides
Match: EMLSAP00000001113 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1186:160345:169896:1 gene:EMLSAG00000001113 transcript:EMLSAT00000001113 description:"maker-LSalAtl2s1186-snap-gene-1.38") HSP 1 Score: 75.485 bits (184), Expect = 7.771e-17 Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 0 Query: 3 LQFNADPEEEGAPDTYIFTNNSIEFNEELLDLWQPVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 ++ + D EE A TNN ++ P+ E V +W+ D I LK++ + VL++L GLW+ IL+ AT I F+CPM + KFP+DTQ CKFQ Sbjct: 119 IELSPDFGEEVAGPGVNTTNNP--------NIVVPMSTEFVKDVWMPDIFIYSLKTYKVMDVLNKLAGLWIGADKTILYSQATHITFICPMRFDKFPLDTQVCKFQ 216
BLAST of EMLSAG00000000546 vs. L. salmonis peptides
Match: EMLSAP00000008455 (pep:novel supercontig:LSalAtl2s:LSalAtl2s519:173869:181393:1 gene:EMLSAG00000008455 transcript:EMLSAT00000008455 description:"snap_masked-LSalAtl2s519-processed-gene-1.11") HSP 1 Score: 71.2478 bits (173), Expect = 7.094e-16 Identity = 28/73 (38.36%), Postives = 45/73 (61.64%), Query Frame = 0 Query: 35 WQPVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKF 107 W P++++ + LW+ + + L SFH+L L +L GLW+ + + AT + FMCPM + KFP+D +CKF Sbjct: 43 WIPIDMDFMNYLWVPNVFVYNLVSFHALDCLKKLAGLWVAEGKDLFYNQATHVTFMCPMRFNKFPLDQHSCKF 115
BLAST of EMLSAG00000000546 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold137_size321222-snap-gene-2.20 (protein:Tk01559 transcript:maker-scaffold137_size321222-snap-gene-2.20-mRNA-1 annotation:"sodium channel protein nach") HSP 1 Score: 73.559 bits (179), Expect = 1.096e-16 Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 0 Query: 27 FNEELLDLWQ--PVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 F +D Q PV+L LV LWL + I LK+F + VL +L GLW+ + I++ A++I +CPM + FP+DTQ CKFQ Sbjct: 41 FQNSSMDSAQLNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQ 124
BLAST of EMLSAG00000000546 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold697_size109876-snap-gene-0.18 (protein:Tk05844 transcript:maker-scaffold697_size109876-snap-gene-0.18-mRNA-1 annotation:"hypothetical protein BRAFLDRAFT_79146") HSP 1 Score: 46.2098 bits (108), Expect = 3.356e-7 Identity = 22/75 (29.33%), Postives = 39/75 (52.00%), Query Frame = 0 Query: 36 QPVEL--ELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 +P+EL E +G W DS K ++S++ + L + I + + T + CPM++ +PMD QTC+ + Sbjct: 119 KPIELDPEAIGDFWSPDSYFHHAKDSKTVSLVKKPASLRINPDKMIKYTMMTMVTIGCPMSFHMYPMDQQTCRLE 193
BLAST of EMLSAG00000000546 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold487_size158652-snap-gene-0.40 (protein:Tk00172 transcript:maker-scaffold487_size158652-snap-gene-0.40-mRNA-1 annotation:"gamma-aminobutyric acid receptor subunit delta-like") HSP 1 Score: 45.8246 bits (107), Expect = 4.934e-7 Identity = 22/66 (33.33%), Postives = 36/66 (54.55%), Query Frame = 0 Query: 42 LVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKF 107 L+ +LW+ D EI L++F S SVL + GL + + + + + F C M + +P D+ TC F Sbjct: 159 LLRELWMPDMEIYGLENFGSKSVLKEMSGLRIKRDKIVEYNIKVTVTFSCRMVFDDYPFDSHTCTF 224 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000546 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 13
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BLAST of EMLSAG00000000546 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000000546 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 6
BLAST of EMLSAG00000000546 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000546 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000546 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000546 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 3
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s108:207826..219456+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000546-683312 ID=EMLSAG00000000546-683312|Name=EMLSAG00000000546|organism=Lepeophtheirus salmonis|type=gene|length=11631bp|location=Sequence derived from alignment at LSalAtl2s108:207826..219456+ (Lepeophtheirus salmonis)back to top Add to Basket
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