EMLSAG00000000549, EMLSAG00000000549-683315 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000549
Unique NameEMLSAG00000000549-683315
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000549 vs. C. finmarchicus
Match: gi|592801224|gb|GAXK01153344.1| (TSA: Calanus finmarchicus comp545310_c0_seq29 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 1.983e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   34 NDVPIHLHKVNLFFNVVLFCPYYMLSV 60
            N  P+H+   +LF  + L CPY+ LS 
Sbjct: 2689 NQWPLHMKTKDLFLFIELRCPYFTLST 2769
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BLAST of EMLSAG00000000549 vs. C. finmarchicus
Match: gi|592801225|gb|GAXK01153343.1| (TSA: Calanus finmarchicus comp545310_c0_seq28 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 1.984e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   34 NDVPIHLHKVNLFFNVVLFCPYYMLSV 60
            N  P+H+   +LF  + L CPY+ LS 
Sbjct: 2689 NQWPLHMKTKDLFLFIELRCPYFTLST 2769
[Close]
BLAST of EMLSAG00000000549 vs. C. finmarchicus
Match: gi|592801226|gb|GAXK01153342.1| (TSA: Calanus finmarchicus comp545310_c0_seq27 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 1.985e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   34 NDVPIHLHKVNLFFNVVLFCPYYMLSV 60
            N  P+H+   +LF  + L CPY+ LS 
Sbjct: 2689 NQWPLHMKTKDLFLFIELRCPYFTLST 2769
[Close]
BLAST of EMLSAG00000000549 vs. C. finmarchicus
Match: gi|592801227|gb|GAXK01153341.1| (TSA: Calanus finmarchicus comp545310_c0_seq26 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 1.999e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   34 NDVPIHLHKVNLFFNVVLFCPYYMLSV 60
            N  P+H+   +LF  + L CPY+ LS 
Sbjct: 2689 NQWPLHMKTKDLFLFIELRCPYFTLST 2769
[Close]
BLAST of EMLSAG00000000549 vs. C. finmarchicus
Match: gi|592801228|gb|GAXK01153340.1| (TSA: Calanus finmarchicus comp545310_c0_seq25 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.008e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   34 NDVPIHLHKVNLFFNVVLFCPYYMLSV 60
            N  P+H+   +LF  + L CPY+ LS 
Sbjct: 2689 NQWPLHMKTKDLFLFIELRCPYFTLST 2769
[Close]
BLAST of EMLSAG00000000549 vs. C. finmarchicus
Match: gi|592801229|gb|GAXK01153339.1| (TSA: Calanus finmarchicus comp545310_c0_seq24 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.008e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   34 NDVPIHLHKVNLFFNVVLFCPYYMLSV 60
            N  P+H+   +LF  + L CPY+ LS 
Sbjct: 2689 NQWPLHMKTKDLFLFIELRCPYFTLST 2769
[Close]
BLAST of EMLSAG00000000549 vs. C. finmarchicus
Match: gi|592801230|gb|GAXK01153338.1| (TSA: Calanus finmarchicus comp545310_c0_seq23 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.008e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   34 NDVPIHLHKVNLFFNVVLFCPYYMLSV 60
            N  P+H+   +LF  + L CPY+ LS 
Sbjct: 2689 NQWPLHMKTKDLFLFIELRCPYFTLST 2769
[Close]
BLAST of EMLSAG00000000549 vs. C. finmarchicus
Match: gi|592801231|gb|GAXK01153337.1| (TSA: Calanus finmarchicus comp545310_c0_seq22 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.016e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   34 NDVPIHLHKVNLFFNVVLFCPYYMLSV 60
            N  P+H+   +LF  + L CPY+ LS 
Sbjct: 3531 NQWPLHMKTKDLFLFIELRCPYFTLST 3611
[Close]
BLAST of EMLSAG00000000549 vs. C. finmarchicus
Match: gi|592801232|gb|GAXK01153336.1| (TSA: Calanus finmarchicus comp545310_c0_seq21 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.016e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   34 NDVPIHLHKVNLFFNVVLFCPYYMLSV 60
            N  P+H+   +LF  + L CPY+ LS 
Sbjct: 3531 NQWPLHMKTKDLFLFIELRCPYFTLST 3611
[Close]
BLAST of EMLSAG00000000549 vs. C. finmarchicus
Match: gi|592801233|gb|GAXK01153335.1| (TSA: Calanus finmarchicus comp545310_c0_seq20 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.017e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   34 NDVPIHLHKVNLFFNVVLFCPYYMLSV 60
            N  P+H+   +LF  + L CPY+ LS 
Sbjct: 3531 NQWPLHMKTKDLFLFIELRCPYFTLST 3611
[Close]
BLAST of EMLSAG00000000549 vs. L. salmonis peptides
Match: EMLSAP00000000549 (pep:novel supercontig:LSalAtl2s:LSalAtl2s108:35759:35988:-1 gene:EMLSAG00000000549 transcript:EMLSAT00000000549 description:"maker-LSalAtl2s108-snap-gene-0.11")

HSP 1 Score: 119.398 bits (298), Expect = 8.496e-37
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 
Query:    1 MIDFVHFAKKKSIIIFNLITYDNNTILFLKTSFNDVPIHLHKVNLFFNVVLFCPYYMLSVI 61
            MIDFVHFAKKKSIIIFNLITYDNNTILFLKTSFNDVPIHLHKVNLFFNVVLFCPYYMLSVI
Sbjct:    1 MIDFVHFAKKKSIIIFNLITYDNNTILFLKTSFNDVPIHLHKVNLFFNVVLFCPYYMLSVI 61
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000549 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000549 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592801224|gb|GAXK01153344.1|1.983e+040.74TSA: Calanus finmarchicus comp545310_c0_seq29 tran... [more]
gi|592801225|gb|GAXK01153343.1|1.984e+040.74TSA: Calanus finmarchicus comp545310_c0_seq28 tran... [more]
gi|592801226|gb|GAXK01153342.1|1.985e+040.74TSA: Calanus finmarchicus comp545310_c0_seq27 tran... [more]
gi|592801227|gb|GAXK01153341.1|1.999e+040.74TSA: Calanus finmarchicus comp545310_c0_seq26 tran... [more]
gi|592801228|gb|GAXK01153340.1|2.008e+040.74TSA: Calanus finmarchicus comp545310_c0_seq25 tran... [more]
gi|592801229|gb|GAXK01153339.1|2.008e+040.74TSA: Calanus finmarchicus comp545310_c0_seq24 tran... [more]
gi|592801230|gb|GAXK01153338.1|2.008e+040.74TSA: Calanus finmarchicus comp545310_c0_seq23 tran... [more]
gi|592801231|gb|GAXK01153337.1|2.016e+040.74TSA: Calanus finmarchicus comp545310_c0_seq22 tran... [more]
gi|592801232|gb|GAXK01153336.1|2.016e+040.74TSA: Calanus finmarchicus comp545310_c0_seq21 tran... [more]
gi|592801233|gb|GAXK01153335.1|2.017e+040.74TSA: Calanus finmarchicus comp545310_c0_seq20 tran... [more]

Pages

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BLAST of EMLSAG00000000549 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000005498.496e-37100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s108:35759... [more]
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BLAST of EMLSAG00000000549 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000549 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000549 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000549 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s108supercontigLSalAtl2s108:35759..35988 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s108-snap-gene-0.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000549 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000549EMLSAT00000000549-696396Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s108:35759..35988-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000549-683315 ID=EMLSAG00000000549-683315|Name=EMLSAG00000000549|organism=Lepeophtheirus salmonis|type=gene|length=230bp|location=Sequence derived from alignment at LSalAtl2s108:35759..35988- (Lepeophtheirus salmonis)
ATGATTGATTTCGTGCATTTTGCAAAAAAAAAATCTATAATTATTTTCAA
TCTCATCACTTATGATAATAATACAATCCTATTTTTGTTTATTTTTTTTC
TTCTTTAAATTGACATTTATAATAATCAAGAAAGACCTCTTTTAATGATG
TTCCTATTCATTTACATAAGGTTAATCTTTTCTTCAACGTTGTTTTATTT
TGTCCCTATTATATGTTATCAGTTATATAA
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