EMLSAG00000000549, EMLSAG00000000549-683315 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000549
Unique NameEMLSAG00000000549-683315
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000549 vs. C. finmarchicus
Match: gi|592801234|gb|GAXK01153334.1| (TSA: Calanus finmarchicus comp545310_c0_seq19 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.017e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   34 NDVPIHLHKVNLFFNVVLFCPYYMLSV 60
            N  P+H+   +LF  + L CPY+ LS 
Sbjct: 3531 NQWPLHMKTKDLFLFIELRCPYFTLST 3611
[Close]
BLAST of EMLSAG00000000549 vs. C. finmarchicus
Match: gi|592801235|gb|GAXK01153333.1| (TSA: Calanus finmarchicus comp545310_c0_seq18 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.024e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   34 NDVPIHLHKVNLFFNVVLFCPYYMLSV 60
            N  P+H+   +LF  + L CPY+ LS 
Sbjct: 3531 NQWPLHMKTKDLFLFIELRCPYFTLST 3611
[Close]
BLAST of EMLSAG00000000549 vs. C. finmarchicus
Match: gi|592801236|gb|GAXK01153332.1| (TSA: Calanus finmarchicus comp545310_c0_seq17 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.024e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   34 NDVPIHLHKVNLFFNVVLFCPYYMLSV 60
            N  P+H+   +LF  + L CPY+ LS 
Sbjct: 2689 NQWPLHMKTKDLFLFIELRCPYFTLST 2769
[Close]
BLAST of EMLSAG00000000549 vs. C. finmarchicus
Match: gi|592801237|gb|GAXK01153331.1| (TSA: Calanus finmarchicus comp545310_c0_seq16 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.025e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   34 NDVPIHLHKVNLFFNVVLFCPYYMLSV 60
            N  P+H+   +LF  + L CPY+ LS 
Sbjct: 2689 NQWPLHMKTKDLFLFIELRCPYFTLST 2769
[Close]
BLAST of EMLSAG00000000549 vs. C. finmarchicus
Match: gi|592801238|gb|GAXK01153330.1| (TSA: Calanus finmarchicus comp545310_c0_seq15 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.030e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   34 NDVPIHLHKVNLFFNVVLFCPYYMLSV 60
            N  P+H+   +LF  + L CPY+ LS 
Sbjct: 2689 NQWPLHMKTKDLFLFIELRCPYFTLST 2769
[Close]
BLAST of EMLSAG00000000549 vs. C. finmarchicus
Match: gi|592801239|gb|GAXK01153329.1| (TSA: Calanus finmarchicus comp545310_c0_seq14 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.030e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   34 NDVPIHLHKVNLFFNVVLFCPYYMLSV 60
            N  P+H+   +LF  + L CPY+ LS 
Sbjct: 2689 NQWPLHMKTKDLFLFIELRCPYFTLST 2769
[Close]
BLAST of EMLSAG00000000549 vs. C. finmarchicus
Match: gi|592801240|gb|GAXK01153328.1| (TSA: Calanus finmarchicus comp545310_c0_seq13 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.035e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   34 NDVPIHLHKVNLFFNVVLFCPYYMLSV 60
            N  P+H+   +LF  + L CPY+ LS 
Sbjct: 2689 NQWPLHMKTKDLFLFIELRCPYFTLST 2769
[Close]
BLAST of EMLSAG00000000549 vs. C. finmarchicus
Match: gi|592801241|gb|GAXK01153327.1| (TSA: Calanus finmarchicus comp545310_c0_seq12 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.035e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   34 NDVPIHLHKVNLFFNVVLFCPYYMLSV 60
            N  P+H+   +LF  + L CPY+ LS 
Sbjct: 2689 NQWPLHMKTKDLFLFIELRCPYFTLST 2769
[Close]
BLAST of EMLSAG00000000549 vs. C. finmarchicus
Match: gi|592801242|gb|GAXK01153326.1| (TSA: Calanus finmarchicus comp545310_c0_seq11 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.046e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   34 NDVPIHLHKVNLFFNVVLFCPYYMLSV 60
            N  P+H+   +LF  + L CPY+ LS 
Sbjct: 3531 NQWPLHMKTKDLFLFIELRCPYFTLST 3611
[Close]
BLAST of EMLSAG00000000549 vs. C. finmarchicus
Match: gi|592801243|gb|GAXK01153325.1| (TSA: Calanus finmarchicus comp545310_c0_seq10 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.048e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   34 NDVPIHLHKVNLFFNVVLFCPYYMLSV 60
            N  P+H+   +LF  + L CPY+ LS 
Sbjct: 3531 NQWPLHMKTKDLFLFIELRCPYFTLST 3611
[Close]
BLAST of EMLSAG00000000549 vs. L. salmonis peptides
Match: EMLSAP00000000549 (pep:novel supercontig:LSalAtl2s:LSalAtl2s108:35759:35988:-1 gene:EMLSAG00000000549 transcript:EMLSAT00000000549 description:"maker-LSalAtl2s108-snap-gene-0.11")

HSP 1 Score: 119.398 bits (298), Expect = 8.496e-37
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 
Query:    1 MIDFVHFAKKKSIIIFNLITYDNNTILFLKTSFNDVPIHLHKVNLFFNVVLFCPYYMLSVI 61
            MIDFVHFAKKKSIIIFNLITYDNNTILFLKTSFNDVPIHLHKVNLFFNVVLFCPYYMLSVI
Sbjct:    1 MIDFVHFAKKKSIIIFNLITYDNNTILFLKTSFNDVPIHLHKVNLFFNVVLFCPYYMLSVI 61
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000549 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000549 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592801234|gb|GAXK01153334.1|2.017e+040.74TSA: Calanus finmarchicus comp545310_c0_seq19 tran... [more]
gi|592801235|gb|GAXK01153333.1|2.024e+040.74TSA: Calanus finmarchicus comp545310_c0_seq18 tran... [more]
gi|592801236|gb|GAXK01153332.1|2.024e+040.74TSA: Calanus finmarchicus comp545310_c0_seq17 tran... [more]
gi|592801237|gb|GAXK01153331.1|2.025e+040.74TSA: Calanus finmarchicus comp545310_c0_seq16 tran... [more]
gi|592801238|gb|GAXK01153330.1|2.030e+040.74TSA: Calanus finmarchicus comp545310_c0_seq15 tran... [more]
gi|592801239|gb|GAXK01153329.1|2.030e+040.74TSA: Calanus finmarchicus comp545310_c0_seq14 tran... [more]
gi|592801240|gb|GAXK01153328.1|2.035e+040.74TSA: Calanus finmarchicus comp545310_c0_seq13 tran... [more]
gi|592801241|gb|GAXK01153327.1|2.035e+040.74TSA: Calanus finmarchicus comp545310_c0_seq12 tran... [more]
gi|592801242|gb|GAXK01153326.1|2.046e+040.74TSA: Calanus finmarchicus comp545310_c0_seq11 tran... [more]
gi|592801243|gb|GAXK01153325.1|2.048e+040.74TSA: Calanus finmarchicus comp545310_c0_seq10 tran... [more]

Pages

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BLAST of EMLSAG00000000549 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000005498.496e-37100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s108:35759... [more]
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BLAST of EMLSAG00000000549 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000549 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000549 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000549 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s108supercontigLSalAtl2s108:35759..35988 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s108-snap-gene-0.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000549 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000549EMLSAT00000000549-696396Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s108:35759..35988-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000549-683315 ID=EMLSAG00000000549-683315|Name=EMLSAG00000000549|organism=Lepeophtheirus salmonis|type=gene|length=230bp|location=Sequence derived from alignment at LSalAtl2s108:35759..35988- (Lepeophtheirus salmonis)
ATGATTGATTTCGTGCATTTTGCAAAAAAAAAATCTATAATTATTTTCAA
TCTCATCACTTATGATAATAATACAATCCTATTTTTGTTTATTTTTTTTC
TTCTTTAAATTGACATTTATAATAATCAAGAAAGACCTCTTTTAATGATG
TTCCTATTCATTTACATAAGGTTAATCTTTTCTTCAACGTTGTTTTATTT
TGTCCCTATTATATGTTATCAGTTATATAA
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