EMLSAG00000000590, EMLSAG00000000590-683356 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000590
Unique NameEMLSAG00000000590-683356
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000590 vs. GO
Match: - (symbol:tam "trans-aconitate 2-methyltransferase" species:83333 "Escherichia coli K-12" [GO:0005829 "cytosol" evidence=IDA] [GO:0032259 "methylation" evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA] [GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0030798 "trans-aconitate 2-methyltransferase activity" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR023149 InterPro:IPR023506 GO:GO:0005829 EMBL:U00096 EMBL:AP009048 PIR:B64906 RefSeq:NP_416036.1 RefSeq:YP_489782.1 ProteinModelPortal:P76145 SMR:P76145 IntAct:P76145 STRING:511145.b1519 PRIDE:P76145 EnsemblBacteria:AAC74592 EnsemblBacteria:BAE76459 GeneID:12931225 GeneID:946074 KEGG:ecj:Y75_p1494 KEGG:eco:b1519 PATRIC:32118334 EchoBASE:EB3573 EcoGene:EG13812 eggNOG:COG4106 HOGENOM:HOG000125295 KO:K00598 OMA:AWETTYL OrthoDB:EOG6716PV ProtClustDB:PRK01683 BioCyc:EcoCyc:G6806-MONOMER BioCyc:ECOL316407:JW1512-MONOMER BioCyc:MetaCyc:G6806-MONOMER PRO:PR:P76145 Genevestigator:P76145 GO:GO:0030798 Gene3D:1.10.150.290 HAMAP:MF_00560 Uniprot:P76145)

HSP 1 Score: 48.1358 bits (113), Expect = 2.876e-5
Identity = 33/101 (32.67%), Postives = 49/101 (48.51%), Query Frame = 0 
Query:   25 VLEIGHGNGDLTRCLYHRFPNIHITGVDLNNKLGSSESLYSDRLHFVYGQDIXTWSGPKDPLDIILCVRSLHFIPDVQKLMRLLRLWMNPKGGHFVNVQIP 125
            V ++G G G+ T  L  R+P   ITG+D +  + +          FV   DI  W  P   LD+I    SL ++PD  +L   L   +NP+G   + VQ+P
Sbjct:   35 VADLGCGPGNSTALLQQRWPAARITGIDSSPAMIAEARSALPDCQFVEA-DIRNWQ-PVQALDLIFANASLQWLPDHYELFPHLVSLLNPQG--VLAVQMP 131
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BLAST of EMLSAG00000000590 vs. C. finmarchicus
Match: gi|592906258|gb|GAXK01052117.1| (TSA: Calanus finmarchicus comp28119_c1_seq4 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 9.112e+0
Identity = 17/56 (30.36%), Postives = 25/56 (44.64%), Query Frame = 0 
Query:  144 FAEELRGYWSQESGINFIQYCCPSRSNKSLLLGSLPKEVNSISIESKISLIHLDLS 199
            F   L  YWS+         CC   SNK L++ S+      I  + K S+I  D++
Sbjct:  693 FGNCLWRYWSKPKDA-----CCVCNSNKDLVIKSVEHRALQIEFKDKFSVIFFDVT 845
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BLAST of EMLSAG00000000590 vs. C. finmarchicus
Match: gi|592906259|gb|GAXK01052116.1| (TSA: Calanus finmarchicus comp28119_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 9.610e+0
Identity = 17/56 (30.36%), Postives = 25/56 (44.64%), Query Frame = 0 
Query:  144 FAEELRGYWSQESGINFIQYCCPSRSNKSLLLGSLPKEVNSISIESKISLIHLDLS 199
            F   L  YWS+         CC   SNK L++ S+      I  + K S+I  D++
Sbjct: 1035 FGNCLWRYWSKPKDA-----CCVCNSNKDLVIKSVEHRALQIEFKDKFSVIFFDVT 1187
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BLAST of EMLSAG00000000590 vs. C. finmarchicus
Match: gi|592906260|gb|GAXK01052115.1| (TSA: Calanus finmarchicus comp28119_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 9.774e+0
Identity = 17/56 (30.36%), Postives = 25/56 (44.64%), Query Frame = 0 
Query:  144 FAEELRGYWSQESGINFIQYCCPSRSNKSLLLGSLPKEVNSISIESKISLIHLDLS 199
            F   L  YWS+         CC   SNK L++ S+      I  + K S+I  D++
Sbjct: 1191 FGNCLWRYWSKPKDA-----CCVCNSNKDLVIKSVEHRALQIEFKDKFSVIFFDVT 1343
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BLAST of EMLSAG00000000590 vs. C. finmarchicus
Match: gi|592906261|gb|GAXK01052114.1| (TSA: Calanus finmarchicus comp28119_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 9.796e+0
Identity = 17/56 (30.36%), Postives = 25/56 (44.64%), Query Frame = 0 
Query:  144 FAEELRGYWSQESGINFIQYCCPSRSNKSLLLGSLPKEVNSISIESKISLIHLDLS 199
            F   L  YWS+         CC   SNK L++ S+      I  + K S+I  D++
Sbjct: 1215 FGNCLWRYWSKPKDA-----CCVCNSNKDLVIKSVEHRALQIEFKDKFSVIFFDVT 1367
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BLAST of EMLSAG00000000590 vs. C. finmarchicus
Match: gi|592906265|gb|GAXK01052110.1| (TSA: Calanus finmarchicus comp28119_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 9.871e+0
Identity = 17/56 (30.36%), Postives = 25/56 (44.64%), Query Frame = 0 
Query:  144 FAEELRGYWSQESGINFIQYCCPSRSNKSLLLGSLPKEVNSISIESKISLIHLDLS 199
            F   L  YWS+         CC   SNK L++ S+      I  + K S+I  D++
Sbjct:  450 FGNCLWRYWSKPKDA-----CCVCNSNKDLVIKSVEHRALQIEFKDKFSVIFFDVT 602
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BLAST of EMLSAG00000000590 vs. L. salmonis peptides
Match: EMLSAP00000000590 (pep:novel supercontig:LSalAtl2s:LSalAtl2s109:305287:306138:-1 gene:EMLSAG00000000590 transcript:EMLSAT00000000590 description:"maker-LSalAtl2s109-augustus-gene-3.27")

HSP 1 Score: 530.406 bits (1365), Expect = 0.000e+0
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0 
Query:    1 MNEEVTESVATLLEPYLHNKDRLNVLEIGHGNGDLTRCLYHRFPNIHITGVDLNNKLGSSESLYSDRLHFVYGQDIXTWSGPKDPLDIILCVRSLHFIPDVQKLMRLLRLWMNPKGGHFVNVQIPLFRIPLFHEEFVSFVNETFAEELRGYWSQESGINFIQYCCPSRSNKSLLLGSLPKEVNSISIESKISLIHLDLSLEQYHLVRSFLDRKGRKELNIALRTFQSSVLKYYDHEFEDLWFEDVILDTVIDLFVEVYSLL 261
            MNEEVTESVATLLEPYLHNKDRLNVLEIGHGNGDLTRCLYHRFPNIHITGVDLNNKLGSSESLYSDRLHFVYGQDIXTWSGPKDPLDIILCVRSLHFIPDVQKLMRLLRLWMNPKGGHFVNVQIPLFRIPLFHEEFVSFVNETFAEELRGYWSQESGINFIQYCCPSRSNKSLLLGSLPKEVNSISIESKISLIHLDLSLEQYHLVRSFLDRKGRKELNIALRTFQSSVLKYYDHEFEDLWFEDVILDTVIDLFVEVYSLL
Sbjct:    1 MNEEVTESVATLLEPYLHNKDRLNVLEIGHGNGDLTRCLYHRFPNIHITGVDLNNKLGSSESLYSDRLHFVYGQDIXTWSGPKDPLDIILCVRSLHFIPDVQKLMRLLRLWMNPKGGHFVNVQIPLFRIPLFHEEFVSFVNETFAEELRGYWSQESGINFIQYCCPSRSNKSLLLGSLPKEVNSISIESKISLIHLDLSLEQYHLVRSFLDRKGRKELNIALRTFQSSVLKYYDHEFEDLWFEDVILDTVIDLFVEVYSLL 261
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000590 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 1
Match NameE-valueIdentityDescription
-2.876e-532.67symbol:tam "trans-aconitate 2-methyltransferase" s... [more]
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BLAST of EMLSAG00000000590 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 15
Match NameE-valueIdentityDescription
gi|592906258|gb|GAXK01052117.1|9.112e+030.36TSA: Calanus finmarchicus comp28119_c1_seq4 transc... [more]
gi|592906259|gb|GAXK01052116.1|9.610e+030.36TSA: Calanus finmarchicus comp28119_c1_seq3 transc... [more]
gi|592906260|gb|GAXK01052115.1|9.774e+030.36TSA: Calanus finmarchicus comp28119_c1_seq2 transc... [more]
gi|592906261|gb|GAXK01052114.1|9.796e+030.36TSA: Calanus finmarchicus comp28119_c1_seq1 transc... [more]
gi|592906265|gb|GAXK01052110.1|9.871e+030.36TSA: Calanus finmarchicus comp28119_c0_seq1 transc... [more]

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BLAST of EMLSAG00000000590 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000005900.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s109:30528... [more]
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BLAST of EMLSAG00000000590 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000590 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000590 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000590 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s109supercontigLSalAtl2s109:305287..306138 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s109-augustus-gene-3.27
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000590 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000590EMLSAT00000000590-696437Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s109:305287..306138-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000590-683356 ID=EMLSAG00000000590-683356|Name=EMLSAG00000000590|organism=Lepeophtheirus salmonis|type=gene|length=852bp|location=Sequence derived from alignment at LSalAtl2s109:305287..306138- (Lepeophtheirus salmonis)
ATGAATGAGGAGGTGACTGAGAGTGTTGCTACTCTTCTGGAGCCTTATCT
TCATAATAAAGATCGCCTGAATGTATTAGAAATTGGACATGGGAACGGTG
ATTTGACCCGTTGTTTATATCATCGATTCCCGAATATTCACATCACTGGG
GTTGATTTGAATAATAAACTAGGATCCTCTGAGTCCCTCTATTCAGATCG
GCTTCATTTTGTTTATGGGCAAGATATTTTKACATGGTCTGGGCCCAAGG
ATCCATTAGATATCATTCTTTGTGTTCGATCGTTACATTTTATACCTGAC
GTTCAAAAACTAATGCGTTTATTAAGGCTTTGGATGAATCCGAAAGGAGG
GCATTTTGTAAATGTTCAAATTCCCTTGTTTCGTATTCCTCTGTTTCATG
AGGAATTTGTTTCGTTTGTGAACGAAACATTTGCCGAGGAATTGAGAGGA
TATTGGTCTCAAGAGAGTGGAATTAATTTTATCCAATATTGCTGCCCCTC
TAGATCTAATAAATCTCTCCTTCTCGGATCACTGCCCAAAGAAGTTAATT
CTATATCTATTGAATCAAAAATCAGTTTAATTCATTTAGGTCCCTAAAAA
ACATACATACTTAAATTGAACAATTTCTGATTGTTTTTTTTGTTTTTTTT
TTCAGATCTATCATTGGAGCAGTACCACTTGGTTCGTTCGTTTCTGGATA
GAAAGGGTAGAAAAGAGTTAAATATCGCTTTGAGGACATTTCAATCCTCT
GTACTAAAGTATTACGACCATGAGTTTGAGGATTTGTGGTTTGAAGACGT
CATTTTAGATACAGTCATTGACCTATTTGTGGAAGTTTATAGTCTGTTAT
AA
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