EMLSAG00000000655, EMLSAG00000000655-683421 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000655
Unique NameEMLSAG00000000655-683421
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000655 vs. L. salmonis peptides
Match: EMLSAP00000000655 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1104:95119:95301:1 gene:EMLSAG00000000655 transcript:EMLSAT00000000655 description:"snap_masked-LSalAtl2s1104-processed-gene-0.2")

HSP 1 Score: 120.939 bits (302), Expect = 1.838e-37
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 
Query:    1 MSQSKRARTTGNTLTTTTLSNVEESLDTDPAHFSSSPTKLPPPLSPSSSKHYQRQHYYNH 60
            MSQSKRARTTGNTLTTTTLSNVEESLDTDPAHFSSSPTKLPPPLSPSSSKHYQRQHYYNH
Sbjct:    1 MSQSKRARTTGNTLTTTTLSNVEESLDTDPAHFSSSPTKLPPPLSPSSSKHYQRQHYYNH 60
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BLAST of EMLSAG00000000655 vs. L. salmonis peptides
Match: EMLSAP00000009933 (pep:novel supercontig:LSalAtl2s:LSalAtl2s649:143075:152173:1 gene:EMLSAG00000009933 transcript:EMLSAT00000009933 description:"maker-LSalAtl2s649-augustus-gene-1.14")

HSP 1 Score: 69.707 bits (169), Expect = 4.176e-16
Identity = 51/61 (83.61%), Postives = 52/61 (85.25%), Query Frame = 0 
Query:    1 MSQSKRARTTGNTLTTTTLSNVEESLDTDPAHFSSSPTKLPPPL-SPSSSKHYQRQHYYNH 60
            MS SKRARTTGNT TTTT SNVEESL  DPAHFSSS TKLPP L S SSSKH+QRQHYYNH
Sbjct:   34 MSLSKRARTTGNTPTTTTSSNVEESLXKDPAHFSSSWTKLPPTLSSSSSSKHHQRQHYYNH 94
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000655 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000655 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000655 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000006551.838e-37100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1104:9511... [more]
EMLSAP000000099334.176e-1683.61pep:novel supercontig:LSalAtl2s:LSalAtl2s649:14307... [more]
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BLAST of EMLSAG00000000655 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000655 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000655 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000655 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1104supercontigLSalAtl2s1104:95119..95301 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1104-processed-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000655 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000655EMLSAT00000000655-696502Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1104:95119..95301+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000655-683421 ID=EMLSAG00000000655-683421|Name=EMLSAG00000000655|organism=Lepeophtheirus salmonis|type=gene|length=183bp|location=Sequence derived from alignment at LSalAtl2s1104:95119..95301+ (Lepeophtheirus salmonis)
ATGAGTCAAAGCAAGCGGGCTCGAACTACGGGTAATACTCTCACGACGAC
TACGTTGTCGAATGTGGAGGAGAGTCTGGACACGGATCCTGCTCATTTCT
CATCCTCCCCGACCAAACTACCTCCTCCTCTATCCCCCTCCTCTTCTAAA
CATTACCAACGTCAACACTATTATAATCACTAG
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