EMLSAG00000000756, EMLSAG00000000756-683522 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000756
Unique NameEMLSAG00000000756-683522
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000756 vs. C. finmarchicus
Match: gi|592945999|gb|GAXK01012554.1| (TSA: Calanus finmarchicus comp678958_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 3.197e+0
Identity = 12/45 (26.67%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:   34 LSQILEKIDTTLIPTCVNVYKEEKCLIYYGMKIENENILSANLLE 78
            +  +L+ +DT  +P   + YKEE    Y   K+++E+I+  ++ +
Sbjct:  162 VGDLLDNLDTIKMPETKHEYKEESSAEYGDFKLDDESIIGEDVTD 296
[Close]
BLAST of EMLSAG00000000756 vs. C. finmarchicus
Match: gi|592945997|gb|GAXK01012556.1| (TSA: Calanus finmarchicus comp678958_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 3.265e+0
Identity = 12/45 (26.67%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:   34 LSQILEKIDTTLIPTCVNVYKEEKCLIYYGMKIENENILSANLLE 78
            +  +L+ +DT  +P   + YKEE    Y   K+++E+I+  ++ +
Sbjct:  162 VGDLLDNLDTIKMPETKHEYKEESSAEYGDFKLDDESIIGEDVTD 296
[Close]
BLAST of EMLSAG00000000756 vs. L. salmonis peptides
Match: EMLSAP00000000756 (pep:novel supercontig:LSalAtl2s:LSalAtl2s111:9935:14204:1 gene:EMLSAG00000000756 transcript:EMLSAT00000000756 description:"maker-LSalAtl2s111-snap-gene-0.34")

HSP 1 Score: 300.056 bits (767), Expect = 5.093e-105
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0 
Query:    1 MKYENNQLKRLIKQETQIKNEKILLLEKDKVKTLSQILEKIDTTLIPTCVNVYKEEKCLIYYGMKIENENILSANLLEPHYEIETQVNVEDMQYESSNLDEKMIPPSLLEPHCEIETEIDDDETQHETLNLDEKIKPPILLGLLHPKIETDGLS 154
            MKYENNQLKRLIKQETQIKNEKILLLEKDKVKTLSQILEKIDTTLIPTCVNVYKEEKCLIYYGMKIENENILSANLLEPHYEIETQVNVEDMQYESSNLDEKMIPPSLLEPHCEIETEIDDDETQHETLNLDEKIKPPILLGLLHPKIETDGLS
Sbjct:    1 MKYENNQLKRLIKQETQIKNEKILLLEKDKVKTLSQILEKIDTTLIPTCVNVYKEEKCLIYYGMKIENENILSANLLEPHYEIETQVNVEDMQYESSNLDEKMIPPSLLEPHCEIETEIDDDETQHETLNLDEKIKPPILLGLLHPKIETDGLS 154
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000756 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000756 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592945999|gb|GAXK01012554.1|3.197e+026.67TSA: Calanus finmarchicus comp678958_c0_seq4 trans... [more]
gi|592945997|gb|GAXK01012556.1|3.265e+026.67TSA: Calanus finmarchicus comp678958_c0_seq6 trans... [more]
back to top
BLAST of EMLSAG00000000756 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000007565.093e-105100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s111:9935:... [more]
back to top
BLAST of EMLSAG00000000756 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000756 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000756 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000756 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s111supercontigLSalAtl2s111:9935..14204 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s111-snap-gene-0.34
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000756 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000756EMLSAT00000000756-696603Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s111:9935..14204+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000756-683522 ID=EMLSAG00000000756-683522|Name=EMLSAG00000000756|organism=Lepeophtheirus salmonis|type=gene|length=4270bp|location=Sequence derived from alignment at LSalAtl2s111:9935..14204+ (Lepeophtheirus salmonis)
ATGAAATATGAAAACAATCAATTAAAAAGGTAATTCTAAAAATAAATTAA
ACTTATTCTTTAAAAACATGCATTTGATAAATAAAAAACAATGACAACAT
TTTGTCATTTTTAAAAAGTATATCTAATTTTGACAAGCAAATATATTATT
TTATGTTGTCAAATATTTCAAAGGGCGACAACATAATTTTAATGAGGGAT
GGGATGTCCTCTCTTCCCACTTCAAAGTTGGTGTTTAATGCTTCAGTGAT
TACCAAATACATTTTTTACTAAAAGGTACCTTTGGGTGTTTCCGGGGAGG
GGGTAGGGTGAGCCTTGCCGGCTGATACTGAAAATTTTGGAGAGTATGCT
ACTAGTATTTTTGTTAATTATTACCAATTACATACTGAACTCAATTGAGT
AAAATTAAAAATCCTTTGCCCTTCACTTCTACAAATTTCAAACTCCCTGT
AGTCACGGGCCCAGATTATATTTTTCTCTTTGCTCTCATGCAACGTACCA
TTTATGAACTACAATATGACTTACGATTACGGAATATGTAATTCCAGCAA
TTACTTCATTATAATTGCAGAGGGCGATGCTTTCATTATTATTATTATTA
TTTCTTTTTTTGGAGGGGGGCATACCCCCAAAAATTATAAACACCGTAAT
TACTTATATAAATAGTTATATTTTTAAATATAGTCTAGTAAGAAAAATAT
ACTTAAAATCAACGTTCTCTCAGATACCAATTTTTAAAAACATAAAATAT
TTTCATAAAGTAAAAAATCCACATAGAGATAATTTTTTATTCACTTTTTG
TGGTTTAAACTTCATAGGAATTTATGAGAATGAAGGATCCCCTTGAATAC
TTTTCCTTTTTTATTGATAGAATTAAATCTGTATGTTTCTTTTTAAACTA
AATTCACACTGATCTTTACTCAATACGGATATATTTCACGATTGCCCCTT
AAAAAATACTTTCACCGAAAGATAAACTAAAAATTCGATGATCTGTCAAA
AACAGGATCTAATCGAACACTGGTTGCCTATAAATAGGGCGTTTCAAAAT
TACTTATTTTCATAAGCCTAAATTGTAGGTTTAAAAAAATATTATGTAGT
TACTAGTTAACTGCTAGACCCATTCTTACAATTGTGAATATTAATAAATA
ATAAAGTTTTCTTCTTAAAATATGCAGAGTTTTTCTACAAAATTTTGAAT
GTTTAAAACCTTTCCATGAAGTCGAATTTAACGAATGGATTTGAGGTAAT
TTCGAGGTATAATTTATAAATAAATTATAATCATTATAAGCTTATTTCCC
AATCTACAATATAATATTTTACTTTATATACTTGTTTCAAGCCTAGTTGG
TCTTCTTCTTTCTCTCATTTCTCATTATTCATTAATAATAAAGATGCATT
TCTATCAGAGCTGTACAGGGTTCAACATGTTAGGAAAGAGTAAAGACTCG
ACGTATTATAACCAACAAACCTCAATAATTATTCTTTTCAAAATAGAGGT
TCTGTTTTCAATTTTGTAGAAATGTCGAAATTTTTTGTAAACACAACAGT
CGTGCTTTCAAAATTCGTGGTATTTTCACTCCTATAAGTAAAAAATTTTT
AAGTCACATAACCTCTTTATTTTGTAAAAAATAATTGAAGAGGTTTTAAG
ATTATAACTTGCATACCTTTTAAAAATAAAATAATTCGTTCCAAAATTAT
ACACATTCGATCGATGCAGAAACTCACCTTAAACAAAACTTATTTTTTTC
TGACGTCAAAGCCGCCCCCTTGCCTAAAAAGTGCGCACACATTATAGTGA
TTTACATGTTGTTATACAAACAAATAGTCCAATTGAACGTGGCAGTTAAC
TCGAGATAAGACTATTTCGTCTTTTAGCTTTATCAATAGACTATAGAAGG
TAATAATTTAATTAACCTTTTGTGAAGAGCTCCGACTAGATTCAATTTTA
AATCGGAGGAAGCTATATCCTTTACCATTTTTTAAGACNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGCA
AGTTTTATGCCTTACAAAAATCAGAAACCAAGTTAAAGTCAAGTATTTTA
AAGTTTCATCCAATTCTCTAACTTWGTTATATAGTCTTTACTTTAAGTTA
ATTATTTATTTTTTTAGGTAGCATAAGCTTCAGGCTTAGATATTTCATTC
ATGAAATATTTCCTTTTGAATTGTTAATCCATTTGCCTGGAGTTTTGGCT
CTTCCCCATCAGCCTACTGATTAATGATCATTATTTGTAACTAATATTGA
TTATTATTGCAACAGCGATGAGAAAAAGTATACATAATAATACATCAAAT
TCATGTCCTCAGGAAATAAATGATAATTTAAAGCTTAAAGCATAGGCTGA
CTTTATGGGGAGTTTGTGAATATTTGTTATATGAATACGTACATTTTATA
ATACTTMGTATAAAATAAATACAAATTGCCCCACCAAGAACAAATTTCAA
ACTCTGTTTATGCTCAAAACAGTACTTTATATCGAGTGAAATAATTTTAA
TTGACTTTTGAGTCCAAGTCAAGTCTTGAGTCTTTGATTATGTGGTCATC
AAGTCTTGAGTCCTAATTCCTATATCTGTTATGCAGTAATAAATGTTATT
ATGCTAATTTAAGTTAGTTAAATATTGCCTATTTTATTTTTAATTCTGAT
TTCAGAGTTCGCTGTATGTTGTGCTGCTGCCCTGGTTGCAAATCTGGAAC
TCGATACAGAGGGAAAAAAAACAAAAAATTGAAGCAATTAAAAATAGAGC
TAAAGTTTCGTTTCATAAACTTCCAAAAGACTTAGAAATTCTATCTACGT
GGCTTAGGAGAATTCCAAGAAAAAATTGGAAACCCAATAATAATACACGA
ATATGTAGCAACCACTTTGATCCAAGTTGCTTTATTATTGAAAGGGTAGA
CTCAAATTCAACGAGGAAAAAAAAGGTGGGAATCTCAAACATCAACGATT
AAAACCAGATGCAATTCCAACCATGTTTCCTAACTTACCATCATATTTAT
CTACCCCAGCGCCAACTATGAGATCAACATCTTGTTTATCGACTGAGAGG
TATTATTTTATTACATTTTCAAATGGTGGTGGTTGAAAATTGAAAAAAAA
AATAAAAATACTACTTTCTGAATATTCTATTGTAAAATTTTTATAAGTTT
TGTATACTAAAAATATTTTTCTTATTTTTTTTAAAGATTGATAAAACAAG
AAACTCAAATTAAGAATGAAAAAATTTTACTTCTTGAAAAGGACAAAGTC
AAAACATTGAGCCAAATACTAGAGAAAATAGATACAACCCTGATTCCAAC
ATGTGTTAATGTCTACAAAGAAGAAAAATGTTTAATATACTATGGCATGA
AAATTGAAAGTGATACTCCGAAAATTAAATTTAATTTAACAATTAAAGAT
GATCTAACATATACGATGAAAATCGGCAAATTCAAAATTCCGAGGAATCA
AGTACTCGAAATTTGTCCTCATTCTAATATTGATAAGATTTCTCAGGTGC
ATAATATTTTAGTATTTTTAAATACTTATCCTCATCAACCAGACAAAATA
CATGTAACTGAAGGACTTTTAGAAATATTAAATGAATATTTAAGCACGTC
ATCACCAAATACTCATCTTGAATCTATTAGAGAACAATTATATCTACATC
CAACGCATAAAAATGGAAGAAAATATTCAACTAAATTACTGGATGCCGCG
GTTTTATGGCAAAACATGTGTCCAGCTTTATATAATCAAATCCTTGCATC
AGGATTGCTCATTTTACCAACTGTACAACATATAAGAAGGATTAAAAGAA
GTGTCAAGGCTGAAGTAAACCTCAATAAAATTCAGCAGTATGAAATCTCC
CCTTTAGATGAAAATATCCTTTCCGCAAATCTATTGGAACCCCACTACGA
AATTGAAACTCAAGTAAATGTGGAGGATATGCAGTATGAATCCTCAAACC
TGGATGAAAAGATGATTCCACCCAGTCTCCTAGAACCCCACTGTGAAATT
GAAACTGAAATTGACGATGATGAAACTCAGCATGAAACCTTAAATTTAGA
TGAAAAGATAAAACCACCCATTCTACTGGGTCTGCTACATCCCAAAATTG
AAACTGACGGGCTTTCATAA
back to top
Add to Basket