EMLSAG00000000777, EMLSAG00000000777-683543 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000777
Unique NameEMLSAG00000000777-683543
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000777 vs. C. finmarchicus
Match: gi|592955160|gb|GAXK01003393.1| (TSA: Calanus finmarchicus comp187153_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 48.1358 bits (113), Expect = 1.185e-7
Identity = 21/45 (46.67%), Postives = 35/45 (77.78%), Query Frame = 0 
Query:   30 EQIKKAYIIALENETEAADWMSKSFIQVCEGLVKVKLIKTAEEIS 74
            EQ+K A +I  E +TEAAD ++K+F +  EGLV+++ I+TAE+++
Sbjct:  120 EQVKTASVINAEGDTEAADLLAKAFAEAGEGLVELRRIETAEDVA 254
[Close]
BLAST of EMLSAG00000000777 vs. C. finmarchicus
Match: gi|592796178|gb|GAXK01158390.1| (TSA: Calanus finmarchicus comp66915_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 43.5134 bits (101), Expect = 3.727e-6
Identity = 20/45 (44.44%), Postives = 33/45 (73.33%), Query Frame = 0 
Query:   30 EQIKKAYIIALENETEAADWMSKSFIQVCEGLVKVKLIKTAEEIS 74
            E +K A II  E +TEAA+ ++ +F +  EGLV+++ I+TAE+I+
Sbjct:   59 EHVKTASIINAEGDTEAAELLASAFAEAGEGLVELRRIETAEDIA 193
[Close]
BLAST of EMLSAG00000000777 vs. C. finmarchicus
Match: gi|592777937|gb|GAXK01176631.1| (TSA: Calanus finmarchicus comp3295_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 42.743 bits (99), Expect = 2.802e-5
Identity = 31/113 (27.43%), Postives = 48/113 (42.48%), Query Frame = 0 
Query:    4 GSLKLSRKFVSARVKEELYLRGSQFD-----------------------------------------EQIKKAYIIALENETEAADWMSKSFIQVCEGLVKVKLIKTAEEISA 75
            G L  +R+ +SARV  EL  R  QF                                          E +K A +I  E +TEAA+ ++ +F +  EGLV+++ I+TAE++ A
Sbjct:  442 GELITNREMLSARVHSELTTRAEQFGLILDDISITHLTFAREFSAAVELKQVAQQDAEKARFLVEKAEHVKSAAVINAEGDTEAAELLASAFAEAGEGLVELRRIETAEDVCA 780
[Close]
BLAST of EMLSAG00000000777 vs. C. finmarchicus
Match: gi|592777936|gb|GAXK01176632.1| (TSA: Calanus finmarchicus comp3295_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 40.817 bits (94), Expect = 1.152e-4
Identity = 19/45 (42.22%), Postives = 35/45 (77.78%), Query Frame = 0 
Query:   30 EQIKKAYIIALENETEAADWMSKSFIQVCEGLVKVKLIKTAEEIS 74
            EQ+K+A +I  E +TEAA+ ++ +F +  EGLV+++ I+T+E+I+
Sbjct:  410 EQVKQAAVINAEGDTEAAELLASAFAEAGEGLVELRRIETSEDIA 544
[Close]
BLAST of EMLSAG00000000777 vs. C. finmarchicus
Match: gi|592867872|gb|GAXK01089690.1| (TSA: Calanus finmarchicus comp3197743_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.284e+0
Identity = 10/29 (34.48%), Postives = 20/29 (68.97%), Query Frame = 0 
Query:   16 RVKEELYLRGSQFDEQIKKAYIIALENET 44
            +++EEL L+ + F+ + K ++ + LENE 
Sbjct:  259 KMEEELLLQANNFESKFKTSFAVLLENEN 345
[Close]
BLAST of EMLSAG00000000777 vs. L. salmonis peptides
Match: EMLSAP00000000777 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1125:65221:65806:1 gene:EMLSAG00000000777 transcript:EMLSAT00000000777 description:"snap_masked-LSalAtl2s1125-processed-gene-0.0")

HSP 1 Score: 150.599 bits (379), Expect = 1.316e-48
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 
Query:    1 MVNGSLKLSRKFVSARVKEELYLRGSQFDEQIKKAYIIALENETEAADWMSKSFIQVCEGLVKVKLIKTAEEISA 75
            MVNGSLKLSRKFVSARVKEELYLRGSQFDEQIKKAYIIALENETEAADWMSKSFIQVCEGLVKVKLIKTAEEISA
Sbjct:    1 MVNGSLKLSRKFVSARVKEELYLRGSQFDEQIKKAYIIALENETEAADWMSKSFIQVCEGLVKVKLIKTAEEISA 75
[Close]
BLAST of EMLSAG00000000777 vs. L. salmonis peptides
Match: EMLSAP00000007686 (pep:novel supercontig:LSalAtl2s:LSalAtl2s447:426260:427822:1 gene:EMLSAG00000007686 transcript:EMLSAT00000007686 description:"maker-LSalAtl2s447-snap-gene-4.45")

HSP 1 Score: 57.7658 bits (138), Expect = 6.286e-12
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 0 
Query:   30 EQIKKAYIIALENETEAADWMSKSFIQVCEGLVKVKLIKTAEEISA 75
            EQIKKA IIA E +TEAAD +SK+FI+  EGLV+++ I+TAE+ISA
Sbjct:  180 EQIKKASIIAAEGDTEAADLLSKAFIKAGEGLVELRRIETAEDISA 225
[Close]
BLAST of EMLSAG00000000777 vs. nr
Match: gi|290561495|gb|ADD38148.1| (Protein l237Cc [Lepeophtheirus salmonis])

HSP 1 Score: 62.003 bits (149), Expect = 1.092e-9
Identity = 43/107 (40.19%), Postives = 55/107 (51.40%), Query Frame = 0 
Query:   10 RKFVSARVKEELYLRGSQFD-----------------------------------------EQIKKAYIIALENETEAADWMSKSFIQVCEGLVKVKLIKTAEEISA 75
            R+FVSARV EEL +R +QF                                          EQIKKA IIA E +TEAAD +SK+FI+  EGLV+++ I+TAE+ISA
Sbjct:  143 REFVSARVNEELNVRAAQFGILLDDISITHLTFGREFTQAVELKQVAQQDAEKARFLVEKAEQIKKASIIAAEGDTEAADLLSKAFIKAGEGLVELRRIETAEDISA 249
[Close]
BLAST of EMLSAG00000000777 vs. nr
Match: gi|225714218|gb|ACO12955.1| (l237Cc [Lepeophtheirus salmonis])

HSP 1 Score: 62.003 bits (149), Expect = 1.092e-9
Identity = 43/107 (40.19%), Postives = 55/107 (51.40%), Query Frame = 0 
Query:   10 RKFVSARVKEELYLRGSQFD-----------------------------------------EQIKKAYIIALENETEAADWMSKSFIQVCEGLVKVKLIKTAEEISA 75
            R+FVSARV EEL +R +QF                                          EQIKKA IIA E +TEAAD +SK+FI+  EGLV+++ I+TAE+ISA
Sbjct:  143 REFVSARVNEELNVRAAQFGILLDDISITHLTFGREFTQAVELKQVAQQDAEKARFLVEKAEQIKKASIIAAEGDTEAADLLSKAFIKAGEGLVELRRIETAEDISA 249
[Close]
BLAST of EMLSAG00000000777 vs. nr
Match: gi|225718124|gb|ACO14908.1| (l237Cc [Caligus clemensi])

HSP 1 Score: 56.225 bits (134), Expect = 1.058e-7
Identity = 41/107 (38.32%), Postives = 53/107 (49.53%), Query Frame = 0 
Query:   10 RKFVSARVKEELYLRGSQFD-----------------------------------------EQIKKAYIIALENETEAADWMSKSFIQVCEGLVKVKLIKTAEEISA 75
            R+FVSARV EEL  R +QF                                          EQIK+A IIA E +TEAA  +SK+FI+  EGLV+++ I+TAE+ISA
Sbjct:  143 REFVSARVNEELNKRAAQFGILLGDISITHLTFGREFTQAVELKQVAQQDAEKARFLVEKAEQIKQASIIAAEGDTEAAGLLSKAFIKAGEGLVELRRIETAEDISA 249
[Close]
BLAST of EMLSAG00000000777 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold168_size293125-processed-gene-1.4 (protein:Tk04459 transcript:snap_masked-scaffold168_size293125-processed-gene-1.4-mRNA-1 annotation:"l237Cc")

HSP 1 Score: 51.2174 bits (121), Expect = 1.346e-9
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 0 
Query:   27 QFDEQIKKAYIIALENETEAADWMSKSFIQVCEGLVKVKLIKTAEEISA 75
            +  EQ KKA II+ E +TEAAD ++K+F +  EGLV+++ I+TAEEIS 
Sbjct:  201 EMAEQTKKAAIISAEGDTEAADLLAKAFGKAGEGLVELRRIETAEEISG 249
[Close]
BLAST of EMLSAG00000000777 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold336_size202805-processed-gene-0.4 (protein:Tk02896 transcript:snap_masked-scaffold336_size202805-processed-gene-0.4-mRNA-1 annotation:"l237Cc")

HSP 1 Score: 51.2174 bits (121), Expect = 1.346e-9
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 0 
Query:   27 QFDEQIKKAYIIALENETEAADWMSKSFIQVCEGLVKVKLIKTAEEISA 75
            +  EQ KKA II+ E +TEAAD ++K+F +  EGLV+++ I+TAEEIS 
Sbjct:  201 EMAEQTKKAAIISAEGDTEAADLLAKAFGKAGEGLVELRRIETAEEISG 249
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000777 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000777 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592955160|gb|GAXK01003393.1|1.185e-746.67TSA: Calanus finmarchicus comp187153_c0_seq1 trans... [more]
gi|592796178|gb|GAXK01158390.1|3.727e-644.44TSA: Calanus finmarchicus comp66915_c0_seq1 transc... [more]
gi|592777937|gb|GAXK01176631.1|2.802e-527.43TSA: Calanus finmarchicus comp3295_c0_seq1 transcr... [more]
gi|592777936|gb|GAXK01176632.1|1.152e-442.22TSA: Calanus finmarchicus comp3295_c0_seq2 transcr... [more]
gi|592867872|gb|GAXK01089690.1|7.284e+034.48TSA: Calanus finmarchicus comp3197743_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000777 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000007771.316e-48100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1125:6522... [more]
EMLSAP000000076866.286e-1265.22pep:novel supercontig:LSalAtl2s:LSalAtl2s447:42626... [more]
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BLAST of EMLSAG00000000777 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000777 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000777 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 3
Match NameE-valueIdentityDescription
gi|290561495|gb|ADD38148.1|1.092e-940.19Protein l237Cc [Lepeophtheirus salmonis][more]
gi|225714218|gb|ACO12955.1|1.092e-940.19l237Cc [Lepeophtheirus salmonis][more]
gi|225718124|gb|ACO14908.1|1.058e-738.32l237Cc [Caligus clemensi][more]
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BLAST of EMLSAG00000000777 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
snap_masked-scaffold168_size293125-processed-gene-1.41.346e-953.06protein:Tk04459 transcript:snap_masked-scaffold168... [more]
snap_masked-scaffold336_size202805-processed-gene-0.41.346e-953.06protein:Tk02896 transcript:snap_masked-scaffold336... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1125supercontigLSalAtl2s1125:65221..65806 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1125-processed-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000777 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000777EMLSAT00000000777-696624Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1125:65221..65806+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000777-683543 ID=EMLSAG00000000777-683543|Name=EMLSAG00000000777|organism=Lepeophtheirus salmonis|type=gene|length=586bp|location=Sequence derived from alignment at LSalAtl2s1125:65221..65806+ (Lepeophtheirus salmonis)
ATGGTCAATGGATCCCTCAAATTATCGTTTTATCCTTTATTTGATCTGGA
AAATATAATAAATAGATTTAAGTTGAATTTTTCAAGAATATATCGCAAAA
TGTTATGTCATATTTTATGGAACATAAAGAAAACGTGATCAATGGAACTA
TAATGACATTTTAGTATMCCTCAGACTTATTCCTTAGCCGATAGAGTTGA
TGAAAGGTTTTATTTAGTTTGTCAAATATAGCAAATACTTCATTACAAAA
TCRTTTTTCAGAAGAAAATTCGTCTCCGCTCGCGTCAAGGAAGAGCTCTA
CTTAAGAGGCTCTCAATTTGGTATTGTTTGAATGMCATCTCCAYCCCCTT
ATTTAACTTTTCGTCATGAATTTACTMAAGCCGTAGAGTTGAAGGGTGCA
CATTCAGACACTGAGAAACCTTGATTTTTTTTTTTTTTTAAAGACGAGCA
AATCAAGAAAGCATATATAATTGCACTCGAGAATGAGACCGAGGCAGCAG
ATTGGATGTCTAAATCCTTTATTCAAGTGTGTGAAGGCTTAGTTAAAGTT
AAATTGATAAAAACAGCTGAAGAGATTTCAGCTTAG
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