EMLSAG00000000868, EMLSAG00000000868-683634 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000868
Unique NameEMLSAG00000000868-683634
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000868 vs. C. finmarchicus
Match: gi|592946436|gb|GAXK01012117.1| (TSA: Calanus finmarchicus comp1468303_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.819e-1
Identity = 22/67 (32.84%), Postives = 30/67 (44.78%), Query Frame = 0 
Query:   19 WALQCETEYNKNGMPPQFKE-------------WAGQSIGSAWNSALSSLRDYESMIQVCYDEVKDF 72
            W  QC+  + +N + P F E              AGQ+I  AW +  S+  D+    Q  YDEV DF
Sbjct:  115 WTNQCDCVFQRNEVYPCFHESTGGRDRSPVPGRGAGQNI--AWGTLRSTKADWTGRAQGWYDEVYDF 309
[Close]
BLAST of EMLSAG00000000868 vs. C. finmarchicus
Match: gi|592946438|gb|GAXK01012115.1| (TSA: Calanus finmarchicus comp1468303_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.574e+0
Identity = 15/33 (45.45%), Postives = 19/33 (57.58%), Query Frame = 0 
Query:   40 AGQSIGSAWNSALSSLRDYESMIQVCYDEVKDF 72
            AGQ+I  AW +  S+  D+    Q  YDEV DF
Sbjct:  279 AGQNI--AWGTLRSTKADWTGRAQGWYDEVYDF 371
[Close]
BLAST of EMLSAG00000000868 vs. C. finmarchicus
Match: gi|592934862|gb|GAXK01023691.1| (TSA: Calanus finmarchicus comp115661_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 8.639e+0
Identity = 14/32 (43.75%), Postives = 20/32 (62.50%), Query Frame = 0 
Query:   34 PQFKEWAGQSIGSAWNSALSSLRDYESMIQVC 65
            PQFKE+   S+  AW S  + LR  +++IQ C
Sbjct:  940 PQFKEF---SLWLAWLSTTAFLRGTDALIQTC 1026
[Close]
BLAST of EMLSAG00000000868 vs. L. salmonis peptides
Match: EMLSAP00000000868 (pep:novel supercontig:LSalAtl2s:LSalAtl2s114:333629:338073:-1 gene:EMLSAG00000000868 transcript:EMLSAT00000000868 description:"snap_masked-LSalAtl2s114-processed-gene-3.3")

HSP 1 Score: 161.77 bits (408), Expect = 4.791e-53
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 
Query:    1 MLRMCNSNPDVICLDLAKWALQCETEYNKNGMPPQFKEWAGQSIGSAWNSALSSLRDYESMIQVCYDEVKDFPQKT 76
            MLRMCNSNPDVICLDLAKWALQCETEYNKNGMPPQFKEWAGQSIGSAWNSALSSLRDYESMIQVCYDEVKDFPQKT
Sbjct:    1 MLRMCNSNPDVICLDLAKWALQCETEYNKNGMPPQFKEWAGQSIGSAWNSALSSLRDYESMIQVCYDEVKDFPQKT 76
[Close]
BLAST of EMLSAG00000000868 vs. L. salmonis peptides
Match: EMLSAP00000000864 (pep:novel supercontig:LSalAtl2s:LSalAtl2s114:109666:110192:-1 gene:EMLSAG00000000864 transcript:EMLSAT00000000864 description:"snap_masked-LSalAtl2s114-processed-gene-1.2")

HSP 1 Score: 78.1814 bits (191), Expect = 1.267e-19
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 0 
Query:    4 MCNSNPDVICLDLAKWALQCETEYNKNGMPPQFKEWAGQSIGSAWNSALSSLRDYESMIQVCYDEVKDFPQK 75
            M N N  V    L +W LQC+  ++ N + PQF  W GQ+I S+WNS  +S R YE+MIQ  YDEVKDFP K
Sbjct:    1 MNNFNLFVTSHILIRWTLQCQRGHDNNRLTPQFDVWVGQNIASSWNSVKTSSRHYETMIQGWYDEVKDFPSK 72
[Close]
BLAST of EMLSAG00000000868 vs. L. salmonis peptides
Match: EMLSAP00000000866 (pep:novel supercontig:LSalAtl2s:LSalAtl2s114:123519:124869:1 gene:EMLSAG00000000866 transcript:EMLSAT00000000866 description:"maker-LSalAtl2s114-augustus-gene-1.6")

HSP 1 Score: 68.9366 bits (167), Expect = 1.826e-15
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 0 
Query:   19 WALQCETEYNKNGMPPQFKEWAGQSIGSAWNSALSSLRDYESMIQVCYDEVKDFPQK 75
            WALQC T ++KN + PQ+ EW GQ+I SAW+SA SS RDYESMIQ  YDEVKDFP K
Sbjct:  207 WALQCRTGHDKNRITPQYNEWVGQNIASAWSSAKSSSRDYESMIQGWYDEVKDFPPK 263
[Close]
BLAST of EMLSAG00000000868 vs. L. salmonis peptides
Match: EMLSAP00000011068 (pep:novel supercontig:LSalAtl2s:LSalAtl2s747:71658:81234:-1 gene:EMLSAG00000011068 transcript:EMLSAT00000011068 description:"maker-LSalAtl2s747-augustus-gene-0.5")

HSP 1 Score: 65.0846 bits (157), Expect = 1.105e-13
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 0 
Query:   19 WALQCETEYNKNGMPPQFKE---WAGQSIGSAWNSALSSLRDYESMIQVCYDEVKDFPQK 75
            WALQC   ++KN + P+F     W GQ++ SAW+S  S  RDYE MI+  YDEVKDFP K
Sbjct:  258 WALQCPKGHDKNRITPEFSGENMWVGQNMASAWSSVKSMNRDYEGMIKGWYDEVKDFPAK 317

HSP 2 Score: 60.4622 bits (145), Expect = 3.537e-12
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 0 
Query:   10 DVICLDLAKWALQCETEYNKNGMPPQFKE----WAGQSIGSAWNSALSSLRDYESMIQVCYDEVKDFPQK 75
            D + L    WALQC   ++KN + P+F +    W GQ++   W+S  SS R+YE MI+  Y+EV DFP K
Sbjct:  597 DNLALSAQMWALQCPNAHDKNRLTPEFHDHPYVWVGQNLAFLWSSVKSSNRNYEDMIKGWYNEVSDFPSK 666
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000868 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000868 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592946436|gb|GAXK01012117.1|1.819e-132.84TSA: Calanus finmarchicus comp1468303_c1_seq1 tran... [more]
gi|592946438|gb|GAXK01012115.1|4.574e+045.45TSA: Calanus finmarchicus comp1468303_c0_seq2 tran... [more]
gi|592934862|gb|GAXK01023691.1|8.639e+043.75TSA: Calanus finmarchicus comp115661_c0_seq1 trans... [more]
back to top
BLAST of EMLSAG00000000868 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000008684.791e-53100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s114:33362... [more]
EMLSAP000000008641.267e-1951.39pep:novel supercontig:LSalAtl2s:LSalAtl2s114:10966... [more]
EMLSAP000000008661.826e-1568.42pep:novel supercontig:LSalAtl2s:LSalAtl2s114:12351... [more]
EMLSAP000000110681.105e-1353.33pep:novel supercontig:LSalAtl2s:LSalAtl2s747:71658... [more]
back to top
BLAST of EMLSAG00000000868 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000868 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000868 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000868 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s114supercontigLSalAtl2s114:333629..338073 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s114-processed-gene-3.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000868 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000868EMLSAT00000000868-696715Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s114:333629..338073-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000868-683634 ID=EMLSAG00000000868-683634|Name=EMLSAG00000000868|organism=Lepeophtheirus salmonis|type=gene|length=4445bp|location=Sequence derived from alignment at LSalAtl2s114:333629..338073- (Lepeophtheirus salmonis)
ATGCTTAGAATGTGCAACTCTAAGTATTTCTGTCTAAAATATTTTTTCTG
CAGGTGATTTCTAGATTTACGTTTTTTTAAATTATTCAACTTGCTAGTAG
CCTTATATGCTGACACATTCCTTATTTATCTATCAATTGTGTTTTGTACA
TTTGTGCAAAACAACTTTAATTTCAAATTGTTTACAACGAACCATCATTG
ATTTATTAATGTCTTTTCTTTTCCAAGCCCACATTAATAAAAAGTGAAAT
ATTTAAAAAAGTCAATCATTTGTTAATTATTGATGTARTTCCTTTATTCA
TAATATCAATAAGGACTCCGAATAGTTCATAAAGATGGTTTTGGAGTCGG
CTGAAATTTTTTGGAATATGTACATCTCTACTAATATGTTTTTTGTTTCT
TTCTTTTTTTAATAGTAGGATGAATTTATATAAGAGATGGCTGGAAGTGG
TGTATTACTCCATCATGTGTGTAAATTTTTTTTAAGAACTTTAAACATTA
TAATATTTAAGCCTCAACAACTTTCCTTTTTAAGATGAAGACGTATTGTG
ATTTAAAACATATCTTGCTTGTATGACTGAAAATGACATAATAATGAATT
TTTGAAAGCACAAAAATTTCAACTGGAGCAATTTCTCTTCTTCAAACAAG
AAAAATTTTTAATTACAAAAACTTTTCATTTTAATAGGGGGTTGTTGAGG
CTTCAAGATTATAANNNNNNNTACGTCTACACGCATAATAGATGTGGTAG
CCKAACTTAAATTACTTGGAGTTTTGTATCTTACTTGTTCAATTCAATGC
TGATATATAGTAATTAAAATCGTGTCTGTAACTAAATTTTTAGCGCCTTA
TACGTTTGAATTGTATCATGTGTCGTTCAAAACGTCCGTAATGATAGGAG
TTGGATTGAGTGGTTTACACTGAAACCTTTGAATAATTTTTTCATGAAAT
ATTTATTTTTTATATGTTTGTTGAAATGATATAGTTTATAACAGAACTAA
AGCCAAGTCCATATTTTCTGAGTCAAGTAAGAGTCATCAGTCTCCGTCCC
GTGTACATTGAAAAAAATGTGAGACGGACTCGAGCACTGCTTTATACATA
TTTCAATTCCTACGGTAAGCATGTAGAAGTCAGTTAGGAACTAGAGACAG
TTAAGGTGATTGTATATTATGTAGGCTGAACAAGTAGAATAATAGAAAAT
AGACTTTTCACAATTAATTTTTTTTATCAGTGAGGCAGTTGAAAATTAGA
TCAAAGTGTAAGGAGTGAACGAACTCCCGTATGAGAAAACCAGAAATTAA
TTTACTCCTGAGAAAGAAGAGTAATTAACATTTTAAAAACGAAATTTAAT
TATATTAAAAACTAATTATGATTGATAAATTTATGTATTTTTTTTCCTAT
CCGCAAATAATAAAAAGTTAAACCTTAGAAAAAGTAAATATTTTTGTTGT
TTGCTTATTAAATGCCTTTATACTTAATAAAGAATCGTAGTAATTCATAA
AGATTGTATCGAAATTGGCTGAAAATTTGGTATCGGTACATCCCTATTTA
CAGTTATAGCTTTGTATGAAATTTTCCAGGTCTTTTATTTGCACACGTGA
ATGTTCAGTCAGATTGGAATGTAATTGAATCTATTTAAGAAAGAAAGTTT
ACTCCTCAGGAATAAAATAATATTAAAAACTGCTTAGGAAAAGAAAATTA
ATCCTTTGAATTAACAATCCGAAAAATAACCAATCTAAAAATACATATAT
ATTTTTATAAATTATGTGCTATTTATTTGTGATAGTGGCATCTGGAATGT
GAATTTGTAGAACTAGAATTAAGTCTTGTAATTAATGTAAAAAGTTTATG
CTTACTATTTTATGTATATAGTTGACAAAAATAACATTTATACAAATACC
CTTTTCAGTCCAGATGTGATCTGTTTGGATTTAGCTAAGGTAGGTTTTTT
CATTTAATGATTAGAATTCATCATATAGTTACAAAAAATATTTAAATAAT
AGTTTGTAGCGGAAACACTATGTATAATATTTAAATACCCCAATGTGTCA
TACAATGTTAAATCCCAAACAATGTATGTTAATTTTATATCTTAATATTA
TTTATTTTGGATATTGTTCCTTTAATTAGTCAGATCGAGTTGCACTGATT
CATTATAAGTTAGAATTTTAGTATTAAAATGATTATATCGGACCTAGAAC
TTGTCCTATGAAGTCCATACAGGGTGTCCATTGGAACTATCTTAAAATTC
AACCTGCTTGATAAGTTATAGTGTATTGTTCACGCAAACTTTTATATTAG
TATGATTTAACCCCGAATATCCACATTATGGATTTGGATGAAGTTTAAAG
TAGTTCCAATTTATCGTGGACACCCTGTATATATAATTACCGTCTTTAGA
GGCGACTATGAATCCAGCTTGAGTTGCTTAAGTAAGTTGTTCATTAAGCT
ACGTCATTCCATATCATTATTTTCTTAAATTTACAAATAGTGTGATAAGA
MCAGAAAATATGTGTCAAATACATATGCCAACGCTCACTATGTTAGAGCC
AATCATTGATAATTTCCTCATAAATATACTAATTTCCCTTCAAAAAGAAC
TAAATGCTGTGTATTATACATTTTTCAATTACACTGGCTACAGTATTACG
TTGAAGCTATAATCACGTGTAAATTACAACTCCACACACAAAAAAAAGAG
ACATTTCTTCAAAAAGTCATATGGCCCTCATATGTCTTTCCAGGAAAACC
TATGTATACTTTTATTCAAAGATTCATATTTAAATTTTCAAGGATAGTTG
CAAAATAATCAACAAAAGAAAAACATTCATTCAGAGTAGTATGGAGCTTA
TTTTTTAAAATTTCGATATATGAGGTACATTGTATCTTAAAATTTTCATT
TTAGCCTCTAAATATAATTGGCTAAATTTTGATAATATGTTATAGGCAAT
GTAGAAAATGTGAAATTATTGTGGGTAATTTGATTATTAAAAAATTCATT
YCTTTTGCAATTTGATCATTAAGGATTTTATTAATATATAATGTCATTGC
AAGTAATTTGATAATTTGTTCAATCCCTTGTGTTGTGTGAATAACGAAGG
ATCTTGATGATCAGTGAAGCGGTGGTGGTGGCTAATGATTCACCAAGTCG
ACCAGAAAAGGGAATGGTCGACAATGAAAAAACAAATTTTTTCTAACAAA
GTGTAAAATTTCAAAACTTTAAGTCTGTTGAACTACCTCTAAATATTTTT
CAAAAAGGTCGAAGTTAATCAATGACATTTAAAGACAACAAGGAAAATTT
TGAAACCCTAATGACCTCCTAGTTCGAACATTTAAAAAAATAAGCTCAAC
ACAAGTGCAGAGACATATTCATAAACAAATGAGCTATGTTTTTATTATAC
TCGTATACGTAATATAATACGTTATATATTCATTAACAGGCATAAAATGT
TCCTTCTACTATAATTTTGTAGTTGTATTAATTCCATGAAGTATACTGAT
GAATGAAAATTGATTTTATAATTGAATTAATACATAAAATTAAATTTACT
TCAATTAACACTTTTTATTAATCTAAACGTAAAATCATTTATTAATTATT
AAAAATAATAATCAGCAAATGAACAATTATTGGTATTGCTCACATCGTTA
CCTTTATTACCTATATCGCACAACCATTCACCCTAAAGGAAACAAAAAAT
GGCCAAAATTATGTTGTAGTTAGTCAAGTTAGTTGTAGTGATGATGGAAC
TACTTGATATTTCAACTTTAATAGTTGGAAATCACCATGTTTTGAGACAA
TCGTATTTCTTAAGATTTAACGTAATATTAGAGTTTTTTTTATAGTTTAA
AGGATGTAAAGCGTTAAATAAATTTTTTGGCTATTGATAAACAAAATCAA
CAAAGTAATATATCCAAATACTCTTTGTAAATACTGCAGAAAGGACAAGA
ACATTGCAAGAGTAAAATTTGTACGTATGACATAACCTCTGAAGAATGTT
TATATCTGTTTAAAAATATCTCATGCACATACATCGTAAATTAATGTAAC
AATACGAGGATAAACTACGAATTATTACTGAGCATAACAAATTGAGATCC
ACTGTAGCATTGGGAAATGAAAAGAGAGGAATTGGTGGKCCACAGCCTTC
CGCCACAAATATAAACAGATTGAGTTGAGACAATGACCTAGCAGTTAGTG
CTCAAATGTAAGTTACAACCTATATTAATGTATCACTAATCACAAACTTT
TATTTTCTCATCATCAAGTGGGCTTTACAATGTGAAACAGAGTATAATAA
AAATGGAATGCCGCCACAATTTAAGGAATGGGCCGGACAAAGTATAGGCT
CTGCATGGAACTCAGCATTAAGCTCATTGAGAGATTATGAATCCATGATT
CAAGTATGTTATGACGAAGTCAAGGATTTTCCTCAGAAAACATAG
back to top
Add to Basket