EMLSAG00000000883, EMLSAG00000000883-683649 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000883
Unique NameEMLSAG00000000883-683649
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000883 vs. C. finmarchicus
Match: gi|592894341|gb|GAXK01064034.1| (TSA: Calanus finmarchicus comp183422_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 9.296e+0
Identity = 23/72 (31.94%), Postives = 36/72 (50.00%), Query Frame = 0 
Query:   37 LSAPKE-LISKPMKDTTEGSSSYRKDNDQPSISTKEVSPEEHKTSDLESPRTLSDSNEVLINSIPSNYSEED 107
            LSA K+ L+S P    +     +R+ + QP+IS+   +P   + S L    TLS     L+  +P +  EED
Sbjct:  939 LSAGKQQLLSNPTFPASPAFQGHRRVSKQPNISSVPEAPSLDQHSQLGESNTLSAVTLPLMKVVPEDSPEED 1154
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BLAST of EMLSAG00000000883 vs. L. salmonis peptides
Match: EMLSAP00000000883 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11531:93:1169:-1 gene:EMLSAG00000000883 transcript:EMLSAT00000000883 description:"snap_masked-LSalAtl2s11531-processed-gene-0.1")

HSP 1 Score: 460.299 bits (1183), Expect = 1.960e-165
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0 
Query:    1 DEPVIDSSEKKSQKKKKKNKSPPVSEEKPEETIPSTLSAPKELISKPMKDTTEGSSSYRKDNDQPSISTKEVSPEEHKTSDLESPRTLSDSNEVLINSIPSNYSEEDIRRYLLTFTMFKGFDTARLSLIIQDILQKLKESPEGLKDYKISLNSYPRRPYSTREISFTSISSTSTPDDIKALVLSQQDPNEEYDXERLDELIKDINEKAKKNPDEIKNMKISWASXXXNFIYFNIIHINS 239
            DEPVIDSSEKKSQKKKKKNKSPPVSEEKPEETIPSTLSAPKELISKPMKDTTEGSSSYRKDNDQPSISTKEVSPEEHKTSDLESPRTLSDSNEVLINSIPSNYSEEDIRRYLLTFTMFKGFDTARLSLIIQDILQKLKESPEGLKDYKISLNSYPRRPYSTREISFTSISSTSTPDDIKALVLSQQDPNEEYDXERLDELIKDINEKAKKNPDEIKNMKISWASXXXNFIYFNIIHINS
Sbjct:    1 DEPVIDSSEKKSQKKKKKNKSPPVSEEKPEETIPSTLSAPKELISKPMKDTTEGSSSYRKDNDQPSISTKEVSPEEHKTSDLESPRTLSDSNEVLINSIPSNYSEEDIRRYLLTFTMFKGFDTARLSLIIQDILQKLKESPEGLKDYKISLNSYPRRPYSTREISFTSISSTSTPDDIKALVLSQQDPNEEYDXERLDELIKDINEKAKKNPDEIKNMKISWASXXXNFIYFNIIHINS 239
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BLAST of EMLSAG00000000883 vs. L. salmonis peptides
Match: EMLSAP00000012916 (pep:novel supercontig:LSalAtl2s:LSalAtl2s9820:56:1612:-1 gene:EMLSAG00000012916 transcript:EMLSAT00000012916 description:"maker-LSalAtl2s9820-snap-gene-0.3")

HSP 1 Score: 150.984 bits (380), Expect = 9.866e-46
Identity = 77/83 (92.77%), Postives = 81/83 (97.59%), Query Frame = 0 
Query:   60 KDNDQPSISTKEVSPEEHKTSDLESPRTLSDSNEVLINSIPSNYSEEDIRRYLLTFTMFKGFDTARLSLIIQDILQKLKESPE 142
            KDNDQ SISTKEVSPE+ KTSDLESPRTLSDS+EVLINSIPSNYSEEDIRRYLLTFT+FKGFDTARLSLIIQDIL+KLKESPE
Sbjct:   45 KDNDQLSISTKEVSPEDIKTSDLESPRTLSDSSEVLINSIPSNYSEEDIRRYLLTFTLFKGFDTARLSLIIQDILRKLKESPE 127
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000883 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000883 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592894341|gb|GAXK01064034.1|9.296e+031.94TSA: Calanus finmarchicus comp183422_c0_seq4 trans... [more]
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BLAST of EMLSAG00000000883 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000008831.960e-165100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s11531:93:... [more]
EMLSAP000000129169.866e-4692.77pep:novel supercontig:LSalAtl2s:LSalAtl2s9820:56:1... [more]
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BLAST of EMLSAG00000000883 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000883 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000883 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000883 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s11531supercontigLSalAtl2s11531:93..1169 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s11531-processed-gene-0.1
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000883 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000883EMLSAT00000000883-696730Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s11531:93..1169-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000883-683649 ID=EMLSAG00000000883-683649|Name=EMLSAG00000000883|organism=Lepeophtheirus salmonis|type=gene|length=1077bp|location=Sequence derived from alignment at LSalAtl2s11531:93..1169- (Lepeophtheirus salmonis)
GACGAACCAGTGATTGATTCAAGTGAGAAGAAATCTCAGAAAAAGAAAAA
GAAGAACAAATCTCCACCTGTTTCAGAAGAGAAACCAGAGGAAACTATTC
CTTCAACATTGTCTGCTCCAAAGGAATTGATTTCTAAGCCCATGAAAGAT
ACCACTGAAGGTGCTCCTTCAACTCCAGTTGAAGAGGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTTCG
AAGAAGAAAAAGAAATCCAAGGTTCCTCTTCCTWCAGAAAAAGATAATGA
TCAACCTAGTATCTCAACAAAAGAAGTCTCTCCAGAAGATATTAAGACAA
GTGATTTGGAATCTCCTAGAACCTTATCTGATTCTAATGAGGTTTTGATA
AACTCCATTNGAAATCCAAGGTTCCTCTTCCTACAGAAAAGATAATGATC
AACCTAGTATCTCAACAAAAGAAGTCTCTCCAGAAGAACATAAGACAAGT
GATTTGGAATCTCCTAGAACCTTATCTGATTCTAATGAGGTTTTGATAAA
CTCCATTCCTTCCAATTACAGTGAGGAAGATATCCGACGCTACCTTCTCA
CATTCACTATGTTCAAGGGATTTGACACTGCAAGACTGAGTTTGATTATT
CAGGATATATTGCAAAAGCTGAAAGAAAGTCCTGAAGGTCTTAAAGATTA
CAAGATCTCTCTAAACTCCTATCCCCGACGACCATACTCTACTCGAGAAA
TTTCATTTACTTCAATATCATCCACATCAACTCCTGATGATATTAAAGCA
CTTGTTTTAAGTCAACAAGATCCCAATGAGGAATATGATCYTGAGCGATT
GGATGAATTGATTAAGGACATTAATGAAAAAGCCAAAAAGAATCCTGACG
AAATTAAGAATATGAAAATATCCTGGGCTAGCTNNNNNNGAAATTTCATT
TACTTCAATATCATCCACATCAACTCC
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