EMLSAG00000000907, EMLSAG00000000907-683673 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000907
Unique NameEMLSAG00000000907-683673
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000907 vs. C. finmarchicus
Match: gi|592822947|gb|GAXK01131621.1| (TSA: Calanus finmarchicus comp160412_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.5874 bits (96), Expect = 4.772e-4
Identity = 19/57 (33.33%), Postives = 35/57 (61.40%), Query Frame = 0 
Query:  110 ITFLIKRSTFGRTGWKVMPEDIDIDMNRLPDSLLANIMGILREAELSGKAVPEKITL 166
            ++F IKR+   R GWK+M +    D + +  S L  ++ ++++ E  G AVPE+I++
Sbjct:  136 VSFSIKRALGSRKGWKIMAD----DGHSIDGSALKTVVNMIKDLEFQGFAVPERISI 294
[Close]
BLAST of EMLSAG00000000907 vs. C. finmarchicus
Match: gi|592822945|gb|GAXK01131623.1| (TSA: Calanus finmarchicus comp160412_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 6.525e-4
Identity = 19/57 (33.33%), Postives = 35/57 (61.40%), Query Frame = 0 
Query:  110 ITFLIKRSTFGRTGWKVMPEDIDIDMNRLPDSLLANIMGILREAELSGKAVPEKITL 166
            ++F IKR+   R GWK+M +    D + +  S L  ++ ++++ E  G AVPE+I++
Sbjct:  136 VSFSIKRALGSRKGWKIMAD----DGHSIDGSALKTVVNMIKDLEFQGFAVPERISI 294
[Close]
BLAST of EMLSAG00000000907 vs. L. salmonis peptides
Match: EMLSAP00000000907 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1159:22987:23984:1 gene:EMLSAG00000000907 transcript:EMLSAT00000000907 description:"augustus_masked-LSalAtl2s1159-processed-gene-0.0")

HSP 1 Score: 339.347 bits (869), Expect = 5.146e-120
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 
Query:    1 MTEARCSSIIFPPPVISIPEEDEYPSSLGFPSSSSTTEYSISDCESQDNGLVGRSISCSPWSISPSRSPXFRHHRSETAARIRTQKKFSKSFKKAKEEPNLSPYEHLSKITFLIKRSTFGRTGWKVMPEDIDIDMNRLPDSLLANIMGILREAELSGKAVPEKITLNL 168
            MTEARCSSIIFPPPVISIPEEDEYPSSLGFPSSSSTTEYSISDCESQDNGLVGRSISCSPWSISPSRSPXFRHHRSETAARIRTQKKFSKSFKKAKEEPNLSPYEHLSKITFLIKRSTFGRTGWKVMPEDIDIDMNRLPDSLLANIMGILREAELSGKAVPEKITLNL
Sbjct:    1 MTEARCSSIIFPPPVISIPEEDEYPSSLGFPSSSSTTEYSISDCESQDNGLVGRSISCSPWSISPSRSPXFRHHRSETAARIRTQKKFSKSFKKAKEEPNLSPYEHLSKITFLIKRSTFGRTGWKVMPEDIDIDMNRLPDSLLANIMGILREAELSGKAVPEKITLNL 168
[Close]
BLAST of EMLSAG00000000907 vs. L. salmonis peptides
Match: EMLSAP00000006188 (pep:novel supercontig:LSalAtl2s:LSalAtl2s338:105537:116654:-1 gene:EMLSAG00000006188 transcript:EMLSAT00000006188 description:"maker-LSalAtl2s338-snap-gene-1.12")

HSP 1 Score: 46.9802 bits (110), Expect = 2.140e-7
Identity = 33/115 (28.70%), Postives = 62/115 (53.91%), Query Frame = 0 
Query:   54 RSISCSPWSISPSRSPXFRHHRSETAARIRTQKKFSKSF--KKAKEEPNLSPYEHLSKITFLIKRSTFGRTGWKVMPEDIDIDMNRLPDSLLANIMGILREAELSGKAVPEKITL 166
            RS + SP+  +P  SP  R  R E    IR  + F ++   ++     +  P    +++ F IK S  GR GWK+MPE+ + +    P  +L  ++ +++E E++G  +PE++++
Sbjct:   40 RSATPSPYD-APPISPSVRRAR-ELNRDIRRGRNFRENSLSRRTPLRSDSVPRPPGTELXFTIKPSIGGRKGWKIMPEETESEPITDP-VILKRVVDMIKEMEMNGSVIPERLSI 151
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000907 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000907 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 12
Match NameE-valueIdentityDescription
gi|592822947|gb|GAXK01131621.1|4.772e-433.33TSA: Calanus finmarchicus comp160412_c0_seq1 trans... [more]
gi|592822945|gb|GAXK01131623.1|6.525e-433.33TSA: Calanus finmarchicus comp160412_c0_seq3 trans... [more]

Pages

back to top
BLAST of EMLSAG00000000907 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000009075.146e-120100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1159:2298... [more]
EMLSAP000000061882.140e-728.70pep:novel supercontig:LSalAtl2s:LSalAtl2s338:10553... [more]
back to top
BLAST of EMLSAG00000000907 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000907 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000907 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000907 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1159supercontigLSalAtl2s1159:22987..23984 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s1159-processed-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000907 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000907EMLSAT00000000907-696754Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1159:22987..23984+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000907-683673 ID=EMLSAG00000000907-683673|Name=EMLSAG00000000907|organism=Lepeophtheirus salmonis|type=gene|length=998bp|location=Sequence derived from alignment at LSalAtl2s1159:22987..23984+ (Lepeophtheirus salmonis)
TGAAAATTTAATTTTCATCGAATTTCTATAACCTCAGTTCAATGACAGAA
GCAAGGTGCTCCTCTATAATTTTCCCACCCCCGGTGATATCCATCCCGGA
AGAGGATGAGTACCCCTCATCCTTGGGATTTCCTTCATCCTCATCTACAA
CAGAGTATTCTATATCGGATTGTGAGAGCCAAGATAACGGATTAGGTGTG
TGAAATGTGATATGAGTGAATTATGTGATTTTCTATTAGTTAAAAGCGAG
GTTCATACCTACATATTTATATTCGACAAACATGAGTTTAAACGGCCATT
TTGTGACAATCTTCATTATGAAGAAGGGAATGAAAAGTTTAATTAGAAGA
GAAGGAGTCACATTGAATATAAATTACTTTGAAATAACCTTGAAAGGTGT
TTTTATAATTTAAAAAAAAAGTTTATAAAAATAATCGAAAGAACTTAATA
CTTTGGATCTTAAAAGAGAAAAACATAAAATATTCCTCACTTTTTTATTT
GATTTTTTTCCATATCAAGCATCAATCTTTTGACACATTATAATTATATA
AATGTAATACCTAATGATAAGTTAATTTTAAACATATTTCTCCCCTCAGT
TGGCCGAAGTATCTCCTGTTCCCCCTGGTCAATTTCCCCTTCTCGAAGTC
CCWCCTTCCGTCATCACCGCTCAGAAACTGCAGCACGGATCCGAACCCAG
AAAAAATTCTCCAAATCCTTTAAAAAAGCCAAAGAGGAGCCGAATCTCTC
TCCCTACGAACATCTCTCCAAAATAACTTTCCTCATAAAACGAAGCACAT
TTGGACGCACTGGTTGGAAAGTGATGCCTGAGGATATAGACATTGATATG
AATAGACTACCTGACTCACTCCTTGCTAACATCATGGGTATACTTAGAGA
GGCTGAGCTCTCTGGTAAGGCAGTGCCAGAAAAAATCACACTAAATTTGT
AATGGATCATGACAAAAACATAAAAGCAAAAAATGTATTACTTATTTT
back to top
Add to Basket