EMLSAG00000000927, EMLSAG00000000927-683693 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000927
Unique NameEMLSAG00000000927-683693
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000927 vs. GO
Match: - (symbol:SMARCA2 "Probable global transcription activator SNF2L2" species:9606 "Homo sapiens" [GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=TAS] [GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=IDA] [GO:0003713 "transcription coactivator activity" evidence=TAS] [GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006200 "ATP catabolic process" evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=TAS] [GO:0006355 "regulation of transcription, DNA-templated" evidence=TAS] [GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS] [GO:0007399 "nervous system development" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity" evidence=TAS] [GO:0008285 "negative regulation of cell proliferation" evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0030308 "negative regulation of cell growth" evidence=IMP] [GO:0035887 "aortic smooth muscle cell differentiation" evidence=IEA] [GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA] [GO:0044212 "transcription regulatory region DNA binding" evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton" evidence=IDA] [GO:0045892 "negative regulation of transcription, DNA-templated" evidence=IDA] [GO:0045893 "positive regulation of transcription, DNA-templated" evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA;TAS] [GO:0071564 "npBAF complex" evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071778 "WINAC complex" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 PROSITE:PS51666 SMART:SM00297 SMART:SM00490 SMART:SM00592 SMART:SM00951 InterPro:IPR027417 SUPFAM:SSF52540 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399 GO:GO:0005654 GO:GO:0030308 GO:GO:0044212 GO:GO:0006338 GO:GO:0000122 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386 GO:GO:0001105 Orphanet:3051 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 InterPro:IPR018359 PROSITE:PS00633 GO:GO:0071778 KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755 PIR:S39580 PIR:S45251 RefSeq:NP_003061.3 RefSeq:NP_620614.2 RefSeq:XP_005251615.1 UniGene:Hs.298990 PDB:2DAT PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 BioGrid:112479 DIP:DIP-29005N IntAct:P51531 MINT:MINT-1898892 STRING:9606.ENSP00000265773 ChEMBL:CHEMBL2362979 PhosphoSite:P51531 DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595 Ensembl:ENST00000349721 Ensembl:ENST00000357248 Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595 KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595 GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:CAB037276 HPA:HPA029981 MIM:600014 MIM:601358 neXtProt:NX_P51531 PharmGKB:PA35948 HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531 OMA:INYKDRC PhylomeDB:P51531 TreeFam:TF300785 EvolutionaryTrace:P51531 GeneWiki:SMARCA2 GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 PRO:PR:P51531 ArrayExpress:P51531 Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531 GO:GO:0035887 Uniprot:P51531)

HSP 1 Score: 54.299 bits (129), Expect = 3.764e-8
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLK 70
            K+Q   EA  +EKLEKQ ++E ERK RQ+HQE+L +I  H +DF+ +H++   K+ K
Sbjct:  419 KRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQK 475
[Close]
BLAST of EMLSAG00000000927 vs. GO
Match: - (symbol:E1C2F7 "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0000790 "nuclear chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative regulation of cell proliferation" evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell differentiation" evidence=IEA] [GO:0044212 "transcription regulatory region DNA binding" evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton" evidence=IEA] [GO:0045892 "negative regulation of transcription, DNA-templated" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 PROSITE:PS51666 SMART:SM00297 SMART:SM00490 SMART:SM00592 SMART:SM00951 InterPro:IPR027417 SUPFAM:SSF52540 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0008152 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 InterPro:IPR018359 PROSITE:PS00633 GeneTree:ENSGT00550000074659 OrthoDB:EOG771265 InterPro:IPR013999 InterPro:IPR014012 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 TreeFam:TF300785 EMBL:AC188951 Ensembl:ENSGALT00000016528 PRO:PR:E1C2F7 Uniprot:E1C2F7)

HSP 1 Score: 54.299 bits (129), Expect = 3.854e-8
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLK 70
            K+Q   EA  +EKLEKQ ++E ERK RQ+HQE+L +I  H +DF+ +H++   K+ K
Sbjct:  368 KRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQK 424
[Close]
BLAST of EMLSAG00000000927 vs. GO
Match: - (symbol:swsn-4 species:6239 "Caenorhabditis elegans" [GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia development" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 PROSITE:PS51666 SMART:SM00297 SMART:SM00490 SMART:SM00592 SMART:SM00951 InterPro:IPR027417 SUPFAM:SSF52540 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0008152 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 InterPro:IPR018359 PROSITE:PS00633 KO:K11647 GeneTree:ENSGT00550000074659 OrthoDB:EOG771265 InterPro:IPR013999 InterPro:IPR014012 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488 RefSeq:NP_502082.1 UniGene:Cel.23435 EnsemblMetazoa:F01G4.1 GeneID:178015 KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 OMA:PDDEMIN NextBio:899366 Uniprot:G5EF53)

HSP 1 Score: 53.9138 bits (128), Expect = 4.771e-8
Identity = 27/71 (38.03%), Postives = 44/71 (61.97%), Query Frame = 0 
Query:    1 MGVACPPPSEGAEKKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLKT 71
            +  A  P +    K+Q   EA  +EKLEKQ ++E ERK RQ+H + +  I  H ++F+ +H+NN +K+ K+
Sbjct:  242 LETALNPYAYRRTKRQSLREARVTEKLEKQQKMEQERKRRQKHTDLMQAIIQHGKEFKEYHRNNLLKMAKS 312
[Close]
BLAST of EMLSAG00000000927 vs. GO
Match: - (symbol:swsn-4 "SWI2/SNF2-like protein" species:6239 "Caenorhabditis elegans" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of transcription, DNA-templated" evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 PROSITE:PS51666 SMART:SM00297 SMART:SM00490 SMART:SM00592 SMART:SM00951 InterPro:IPR027417 SUPFAM:SSF52540 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0008152 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 InterPro:IPR018359 PROSITE:PS00633 KO:K11647 GeneTree:ENSGT00550000074659 OrthoDB:EOG771265 InterPro:IPR013999 InterPro:IPR014012 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488 RefSeq:NP_502082.1 UniGene:Cel.23435 EnsemblMetazoa:F01G4.1 GeneID:178015 KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 OMA:PDDEMIN NextBio:899366 Uniprot:G5EF53)

HSP 1 Score: 53.9138 bits (128), Expect = 4.771e-8
Identity = 27/71 (38.03%), Postives = 44/71 (61.97%), Query Frame = 0 
Query:    1 MGVACPPPSEGAEKKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLKT 71
            +  A  P +    K+Q   EA  +EKLEKQ ++E ERK RQ+H + +  I  H ++F+ +H+NN +K+ K+
Sbjct:  242 LETALNPYAYRRTKRQSLREARVTEKLEKQQKMEQERKRRQKHTDLMQAIIQHGKEFKEYHRNNLLKMAKS 312
[Close]
BLAST of EMLSAG00000000927 vs. C. finmarchicus
Match: gi|592890136|gb|GAXK01068239.1| (TSA: Calanus finmarchicus comp17614_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 50.8322 bits (120), Expect = 1.923e-7
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 0 
Query:   24 SEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLK 70
            +E+LEKQ RVE+ERK R +H E++  + +H R+ Q +HKNN  K+ K
Sbjct: 1468 TERLEKQQRVESERKRRAKHSEYINAVLTHSREMQAWHKNNVQKVQK 1608
[Close]
BLAST of EMLSAG00000000927 vs. C. finmarchicus
Match: gi|592890137|gb|GAXK01068238.1| (TSA: Calanus finmarchicus comp17614_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 50.8322 bits (120), Expect = 1.991e-7
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 0 
Query:   24 SEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLK 70
            +E+LEKQ RVE+ERK R +H E++  + +H R+ Q +HKNN  K+ K
Sbjct: 1468 TERLEKQQRVESERKRRAKHSEYINAVLTHSREMQAWHKNNVQKVQK 1608
[Close]
BLAST of EMLSAG00000000927 vs. C. finmarchicus
Match: gi|592890132|gb|GAXK01068243.1| (TSA: Calanus finmarchicus comp17614_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 50.447 bits (119), Expect = 2.070e-7
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 0 
Query:   24 SEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLK 70
            +E+LEKQ RVE+ERK R +H E++  + +H R+ Q +HKNN  K+ K
Sbjct: 3290 TERLEKQQRVESERKRRAKHSEYINAVLTHSREMQAWHKNNVQKVQK 3430
[Close]
BLAST of EMLSAG00000000927 vs. L. salmonis peptides
Match: EMLSAP00000000927 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1161:15715:16165:-1 gene:EMLSAG00000000927 transcript:EMLSAT00000000927 description:"maker-LSalAtl2s1161-snap-gene-0.17")

HSP 1 Score: 193.741 bits (491), Expect = 4.527e-65
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 
Query:    1 MGVACPPPSEGAEKKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLKTMPRKSRKKRQRDLKKRDQEPLW 93
            MGVACPPPSEGAEKKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLKTMPRKSRKKRQRDLKKRDQEPLW
Sbjct:    1 MGVACPPPSEGAEKKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLKTMPRKSRKKRQRDLKKRDQEPLW 93
[Close]
BLAST of EMLSAG00000000927 vs. L. salmonis peptides
Match: EMLSAP00000009416 (pep:novel supercontig:LSalAtl2s:LSalAtl2s600:248324:253025:1 gene:EMLSAG00000009416 transcript:EMLSAT00000009416 description:"maker-LSalAtl2s600-snap-gene-2.21")

HSP 1 Score: 85.8853 bits (211), Expect = 1.394e-20
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLKT 71
            K+QG  EA  +EKLEKQ R EAERK RQRHQE+L  I SH RDFQ+FHKNNQMKLLKT
Sbjct:  137 KRQGLREARATEKLEKQQRXEAERKRRQRHQEYLNAILSHARDFQNFHKNNQMKLLKT 194
[Close]
BLAST of EMLSAG00000000927 vs. SwissProt
Match: gi|19857556|sp|P25439.2|BRM_DROME (RecName: Full=ATP-dependent helicase brm; AltName: Full=Homeotic gene regulator; AltName: Full=Protein brahma)

HSP 1 Score: 60.077 bits (144), Expect = 5.664e-11
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKL 68
            K+QG  EA  +EKLEKQ ++EAERK RQ+H EFL  +  H +D + FH+NN+ +L
Sbjct:  484 KRQGLREARATEKLEKQQKLEAERKRRQKHLEFLAAVLQHGKDLREFHRNNKAQL 538
[Close]
BLAST of EMLSAG00000000927 vs. SwissProt
Match: gi|123790047|sp|Q3TKT4.1|SMCA4_MOUSE (RecName: Full=Transcription activator BRG1; AltName: Full=ATP-dependent helicase SMARCA4; AltName: Full=BRG1-associated factor 190A; Short=BAF190A; AltName: Full=Protein brahma homolog 1; AltName: Full=SNF2-beta; AltName: Full=SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4)

HSP 1 Score: 55.8398 bits (133), Expect = 1.701e-9
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLK 70
            K+Q   EA  +EKLEKQ ++E ERK RQ+HQE+L +I  H +DF+ +H++   KL K
Sbjct:  443 KRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFREYHRSVTGKLQK 499
[Close]
BLAST of EMLSAG00000000927 vs. SwissProt
Match: gi|81914599|sp|Q8K1P7.1|SMCA4_RAT (RecName: Full=Transcription activator BRG1; AltName: Full=ATP-dependent helicase SMARCA4; AltName: Full=BRG1-associated factor 190A; Short=BAF190A; AltName: Full=Protein brahma homolog 1; AltName: Full=SNF2-beta; AltName: Full=SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4)

HSP 1 Score: 55.8398 bits (133), Expect = 1.822e-9
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLK 70
            K+Q   EA  +EKLEKQ ++E ERK RQ+HQE+L +I  H +DF+ +H++   KL K
Sbjct:  443 KRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFREYHRSVTGKLQK 499
[Close]
BLAST of EMLSAG00000000927 vs. SwissProt
Match: gi|288559138|sp|A7Z019.1|SMCA4_BOVIN (RecName: Full=Transcription activator BRG1; AltName: Full=ATP-dependent helicase SMARCA4; AltName: Full=BRG1-associated factor 190A; Short=BAF190A; AltName: Full=Protein brahma homolog 1; AltName: Full=SNF2-beta; AltName: Full=SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4)

HSP 1 Score: 55.4546 bits (132), Expect = 2.825e-9
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLK 70
            K+Q   EA  +EKLEKQ ++E ERK RQ+HQE+L +I  H +DF+ +H++   K+ K
Sbjct:  435 KRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQK 491
[Close]
BLAST of EMLSAG00000000927 vs. SwissProt
Match: gi|116242792|sp|P51532.2|SMCA4_HUMAN (RecName: Full=Transcription activator BRG1; AltName: Full=ATP-dependent helicase SMARCA4; AltName: Full=BRG1-associated factor 190A; Short=BAF190A; AltName: Full=Mitotic growth and transcription activator; AltName: Full=Protein BRG-1; AltName: Full=Protein brahma homolog 1; AltName: Full=SNF2-beta; AltName: Full=SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4)

HSP 1 Score: 55.0694 bits (131), Expect = 3.178e-9
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLK 70
            K+Q   EA  +EKLEKQ ++E ERK RQ+HQE+L +I  H +DF+ +H++   K+ K
Sbjct:  443 KRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQK 499
[Close]
BLAST of EMLSAG00000000927 vs. SwissProt
Match: gi|81884744|sp|Q6DIC0.1|SMCA2_MOUSE (RecName: Full=Probable global transcription activator SNF2L2; AltName: Full=ATP-dependent helicase SMARCA2; AltName: Full=BRG1-associated factor 190B; Short=BAF190B; AltName: Full=Protein brahma homolog; AltName: Full=SNF2-alpha; AltName: Full=SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2)

HSP 1 Score: 54.299 bits (129), Expect = 5.925e-9
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLK 70
            K+Q   EA  +EKLEKQ ++E ERK RQ+HQE+L +I  H +DF+ +H++   K+ K
Sbjct:  424 KRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQK 480
[Close]
BLAST of EMLSAG00000000927 vs. SwissProt
Match: gi|212276472|sp|P51531.2|SMCA2_HUMAN (RecName: Full=Probable global transcription activator SNF2L2; AltName: Full=ATP-dependent helicase SMARCA2; AltName: Full=BRG1-associated factor 190B; Short=BAF190B; AltName: Full=Protein brahma homolog; Short=hBRM; AltName: Full=SNF2-alpha; AltName: Full=SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2)

HSP 1 Score: 54.299 bits (129), Expect = 6.534e-9
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLK 70
            K+Q   EA  +EKLEKQ ++E ERK RQ+HQE+L +I  H +DF+ +H++   K+ K
Sbjct:  419 KRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQK 475
[Close]
BLAST of EMLSAG00000000927 vs. Select Arthropod Genomes
Match: gb|EEZ97706.2| (brahma [Tribolium castaneum])

HSP 1 Score: 68.9366 bits (167), Expect = 2.056e-14
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKL 68
            K+QG  EA  +EKLEKQ ++EAERK RQ+HQEFL ++  H +DF+ FH+NNQ KL
Sbjct:  264 KRQGLREARATEKLEKQQKLEAERKRRQKHQEFLTSVLQHGKDFKEFHRNNQAKL 318
[Close]
BLAST of EMLSAG00000000927 vs. Select Arthropod Genomes
Match: gb|KYB25021.1| (brahma [Tribolium castaneum])

HSP 1 Score: 68.9366 bits (167), Expect = 2.056e-14
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKL 68
            K+QG  EA  +EKLEKQ ++EAERK RQ+HQEFL ++  H +DF+ FH+NNQ KL
Sbjct:  264 KRQGLREARATEKLEKQQKLEAERKRRQKHQEFLTSVLQHGKDFKEFHRNNQAKL 318
[Close]
BLAST of EMLSAG00000000927 vs. Select Arthropod Genomes
Match: gb|KYB25022.1| (brahma [Tribolium castaneum])

HSP 1 Score: 68.9366 bits (167), Expect = 2.264e-14
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKL 68
            K+QG  EA  +EKLEKQ ++EAERK RQ+HQEFL ++  H +DF+ FH+NNQ KL
Sbjct:  217 KRQGLREARATEKLEKQQKLEAERKRRQKHQEFLTSVLQHGKDFKEFHRNNQAKL 271
[Close]
BLAST of EMLSAG00000000927 vs. Select Arthropod Genomes
Match: gb|KYB25018.1| (brahma [Tribolium castaneum])

HSP 1 Score: 68.9366 bits (167), Expect = 2.635e-14
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKL 68
            K+QG  EA  +EKLEKQ ++EAERK RQ+HQEFL ++  H +DF+ FH+NNQ KL
Sbjct:  487 KRQGLREARATEKLEKQQKLEAERKRRQKHQEFLTSVLQHGKDFKEFHRNNQAKL 541
[Close]
BLAST of EMLSAG00000000927 vs. Select Arthropod Genomes
Match: XP_016773027.1 (PREDICTED: ATP-dependent helicase brm [Apis mellifera])

HSP 1 Score: 66.2402 bits (160), Expect = 1.878e-13
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKL 68
            K+QG  EA  +EKLEKQ ++EAERK RQ+HQEFL ++  H +DF+ FH+NN  KL
Sbjct:  914 KRQGLREARATEKLEKQQKLEAERKRRQKHQEFLSSVLQHGKDFKEFHRNNVAKL 968
[Close]
BLAST of EMLSAG00000000927 vs. Select Arthropod Genomes
Match: EAA07201.4 (AGAP010462-PA, partial [Anopheles gambiae str. PEST])

HSP 1 Score: 64.6994 bits (156), Expect = 6.621e-13
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKL 68
            K+QG  EA  +EKLEKQ ++EAERK RQ+HQEFL ++  H +DF+ +H+NN  KL
Sbjct:  492 KRQGLREARATEKLEKQQKLEAERKRRQKHQEFLASVLQHGKDFKEYHRNNIAKL 546
[Close]
BLAST of EMLSAG00000000927 vs. Select Arthropod Genomes
Match: EFX72834.1 (hypothetical protein DAPPUDRAFT_215757 [Daphnia pulex])

HSP 1 Score: 62.7734 bits (151), Expect = 3.032e-12
Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLKT 71
            KKQG  EA  +EKLEKQ ++EAER+ RQ+HQE+L  +  H +D + FH+NN  K+++ 
Sbjct:  440 KKQGLREARATEKLEKQQKMEAERRRRQKHQEYLTAVLQHGKDLKEFHRNNLAKIVRI 497
[Close]
BLAST of EMLSAG00000000927 vs. Select Arthropod Genomes
Match: EEB11322.1 (conserved hypothetical protein [Pediculus humanus corporis])

HSP 1 Score: 61.2326 bits (147), Expect = 1.053e-11
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMK 67
            K+QG  EA  +EKLEKQ + EAERK RQ+HQE+L  +  H +DF+ +H+NN  K
Sbjct:  365 KRQGLREARATEKLEKQQKFEAERKRRQKHQEYLAAVLQHSKDFKEYHRNNLAK 418
[Close]
BLAST of EMLSAG00000000927 vs. Select Arthropod Genomes
Match: AAN11774.1 (brahma, isoform D [Drosophila melanogaster])

HSP 1 Score: 60.077 bits (144), Expect = 2.666e-11
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKL 68
            K+QG  EA  +EKLEKQ ++EAERK RQ+H EFL  +  H +D + FH+NN+ +L
Sbjct:  480 KRQGLREARATEKLEKQQKLEAERKRRQKHLEFLAAVLQHGKDLREFHRNNKAQL 534
[Close]
BLAST of EMLSAG00000000927 vs. Select Arthropod Genomes
Match: AAN11773.1 (brahma, isoform C [Drosophila melanogaster])

HSP 1 Score: 60.077 bits (144), Expect = 2.666e-11
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKL 68
            K+QG  EA  +EKLEKQ ++EAERK RQ+H EFL  +  H +D + FH+NN+ +L
Sbjct:  480 KRQGLREARATEKLEKQQKLEAERKRRQKHLEFLAAVLQHGKDLREFHRNNKAQL 534
[Close]
BLAST of EMLSAG00000000927 vs. nr
Match: gi|1073535903|gb|JAT85063.1| (hypothetical protein g.8451, partial [Pectinophora gossypiella])

HSP 1 Score: 70.4774 bits (171), Expect = 1.307e-12
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKL 68
            K+QG  EA  +EKLEKQ ++EAERK RQ+HQEFL T+  H +DF+ FH+NN  KL
Sbjct:  101 KRQGLREARATEKLEKQQKLEAERKRRQKHQEFLQTVLQHAKDFKEFHRNNVSKL 155
[Close]
BLAST of EMLSAG00000000927 vs. nr
Match: gi|1133425729|ref|XP_019868655.1| (PREDICTED: LOW QUALITY PROTEIN: ATP-dependent helicase brm-like [Aethina tumida])

HSP 1 Score: 69.3218 bits (168), Expect = 7.757e-12
Identity = 33/57 (57.89%), Postives = 45/57 (78.95%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLK 70
            K+QG  EA  +EKLEKQ ++EAERK RQ+HQEFL ++  H +DF+ FH+NNQ KL++
Sbjct:  391 KRQGLREARATEKLEKQQKLEAERKRRQKHQEFLTSVLQHGKDFKDFHRNNQAKLVR 447
[Close]
BLAST of EMLSAG00000000927 vs. nr
Match: gi|1004395637|gb|EEZ97706.2| (brahma [Tribolium castaneum])

HSP 1 Score: 68.9366 bits (167), Expect = 1.006e-11
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKL 68
            K+QG  EA  +EKLEKQ ++EAERK RQ+HQEFL ++  H +DF+ FH+NNQ KL
Sbjct:  264 KRQGLREARATEKLEKQQKLEAERKRRQKHQEFLTSVLQHGKDFKEFHRNNQAKL 318
[Close]
BLAST of EMLSAG00000000927 vs. nr
Match: gi|1004395636|gb|KYB25021.1| (brahma [Tribolium castaneum])

HSP 1 Score: 68.9366 bits (167), Expect = 1.006e-11
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKL 68
            K+QG  EA  +EKLEKQ ++EAERK RQ+HQEFL ++  H +DF+ FH+NNQ KL
Sbjct:  264 KRQGLREARATEKLEKQQKLEAERKRRQKHQEFLTSVLQHGKDFKEFHRNNQAKL 318
[Close]
BLAST of EMLSAG00000000927 vs. nr
Match: gi|1004395638|gb|KYB25022.1| (brahma [Tribolium castaneum])

HSP 1 Score: 68.9366 bits (167), Expect = 1.108e-11
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKL 68
            K+QG  EA  +EKLEKQ ++EAERK RQ+HQEFL ++  H +DF+ FH+NNQ KL
Sbjct:  217 KRQGLREARATEKLEKQQKLEAERKRRQKHQEFLTSVLQHGKDFKEFHRNNQAKL 271
[Close]
BLAST of EMLSAG00000000927 vs. nr
Match: gi|642937367|ref|XP_008198808.1| (PREDICTED: ATP-dependent helicase brm isoform X2 [Tribolium castaneum] >gi|1004395633|gb|KYB25018.1| brahma [Tribolium castaneum])

HSP 1 Score: 68.9366 bits (167), Expect = 1.289e-11
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKL 68
            K+QG  EA  +EKLEKQ ++EAERK RQ+HQEFL ++  H +DF+ FH+NNQ KL
Sbjct:  487 KRQGLREARATEKLEKQQKLEAERKRRQKHQEFLTSVLQHGKDFKEFHRNNQAKL 541
[Close]
BLAST of EMLSAG00000000927 vs. nr
Match: gi|642937363|ref|XP_008198806.1| (PREDICTED: ATP-dependent helicase brm isoform X1 [Tribolium castaneum] >gi|642937365|ref|XP_008198807.1| PREDICTED: ATP-dependent helicase brm isoform X1 [Tribolium castaneum])

HSP 1 Score: 68.9366 bits (167), Expect = 1.289e-11
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKL 68
            K+QG  EA  +EKLEKQ ++EAERK RQ+HQEFL ++  H +DF+ FH+NNQ KL
Sbjct:  487 KRQGLREARATEKLEKQQKLEAERKRRQKHQEFLTSVLQHGKDFKEFHRNNQAKL 541
[Close]
BLAST of EMLSAG00000000927 vs. nr
Match: gi|642937369|ref|XP_008198809.1| (PREDICTED: ATP-dependent helicase brm isoform X3 [Tribolium castaneum])

HSP 1 Score: 68.5514 bits (166), Expect = 1.393e-11
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKL 68
            K+QG  EA  +EKLEKQ ++EAERK RQ+HQEFL ++  H +DF+ FH+NNQ KL
Sbjct:  440 KRQGLREARATEKLEKQQKLEAERKRRQKHQEFLTSVLQHGKDFKEFHRNNQAKL 494
[Close]
BLAST of EMLSAG00000000927 vs. nr
Match: gi|1041531429|ref|XP_017301764.1| (PREDICTED: ATP-dependent helicase brm [Diaphorina citri])

HSP 1 Score: 68.5514 bits (166), Expect = 1.514e-11
Identity = 30/57 (52.63%), Postives = 45/57 (78.95%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLK 70
            K+QG  EA  +EKLEKQ +VEAERK RQ+HQE++ T+  H +DF+ +H+NNQ ++++
Sbjct:  280 KRQGLKEARATEKLEKQQKVEAERKKRQKHQEYITTVLQHCKDFKEYHRNNQARIMR 336
[Close]
BLAST of EMLSAG00000000927 vs. nr
Match: gi|930665571|gb|KPJ06699.1| (ATP-dependent helicase brm [Papilio machaon])

HSP 1 Score: 67.781 bits (164), Expect = 2.896e-11
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKL 68
            K+QG  EA  +EKLEKQ ++EAERK RQ+HQEFL T+  H +DF+ +H+NN  KL
Sbjct:  523 KRQGLREARATEKLEKQQKLEAERKRRQKHQEFLQTVLQHAKDFKEYHRNNVAKL 577
[Close]
BLAST of EMLSAG00000000927 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold495_size155559-snap-gene-0.32 (protein:Tk09239 transcript:maker-scaffold495_size155559-snap-gene-0.32-mRNA-1 annotation:"homeotic gene")

HSP 1 Score: 66.2402 bits (160), Expect = 1.592e-14
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 0 
Query:   14 KKQGGGEACTSEKLEKQHRVEAERKCRQRHQEFLYTIFSHVRDFQHFHKNNQMKLLK 70
            K+QG  EA  +EKLEKQ R+EAER+ RQ+HQE+L  + +H RD Q+FH+NN  K+ K
Sbjct:  323 KRQGLREARATEKLEKQQRLEAERRRRQKHQEYLNAVLTHGRDLQNFHRNNLGKIQK 379
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000927 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 24
Match NameE-valueIdentityDescription
-3.764e-847.37symbol:SMARCA2 "Probable global transcription acti... [more]
-3.854e-847.37symbol:E1C2F7 "Uncharacterized protein" species:90... [more]
-4.771e-838.03symbol:swsn-4 species:6239 "Caenorhabditis elegans... [more]
-4.771e-838.03symbol:swsn-4 "SWI2/SNF2-like protein" species:623... [more]

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BLAST of EMLSAG00000000927 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592890136|gb|GAXK01068239.1|1.923e-748.94TSA: Calanus finmarchicus comp17614_c0_seq2 transc... [more]
gi|592890137|gb|GAXK01068238.1|1.991e-748.94TSA: Calanus finmarchicus comp17614_c0_seq1 transc... [more]
gi|592890132|gb|GAXK01068243.1|2.070e-748.94TSA: Calanus finmarchicus comp17614_c1_seq1 transc... [more]
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BLAST of EMLSAG00000000927 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000009274.527e-65100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1161:1571... [more]
EMLSAP000000094161.394e-2074.14pep:novel supercontig:LSalAtl2s:LSalAtl2s600:24832... [more]
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BLAST of EMLSAG00000000927 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
gi|19857556|sp|P25439.2|BRM_DROME5.664e-1152.73RecName: Full=ATP-dependent helicase brm; AltName:... [more]
gi|123790047|sp|Q3TKT4.1|SMCA4_MOUSE1.701e-949.12RecName: Full=Transcription activator BRG1; AltNam... [more]
gi|81914599|sp|Q8K1P7.1|SMCA4_RAT1.822e-949.12RecName: Full=Transcription activator BRG1; AltNam... [more]
gi|288559138|sp|A7Z019.1|SMCA4_BOVIN2.825e-947.37RecName: Full=Transcription activator BRG1; AltNam... [more]
gi|116242792|sp|P51532.2|SMCA4_HUMAN3.178e-947.37RecName: Full=Transcription activator BRG1; AltNam... [more]
gi|81884744|sp|Q6DIC0.1|SMCA2_MOUSE5.925e-947.37RecName: Full=Probable global transcription activa... [more]
gi|212276472|sp|P51531.2|SMCA2_HUMAN6.534e-947.37RecName: Full=Probable global transcription activa... [more]
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BLAST of EMLSAG00000000927 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 17
Match NameE-valueIdentityDescription
gb|EEZ97706.2|2.056e-1460.00brahma [Tribolium castaneum][more]
gb|KYB25021.1|2.056e-1460.00brahma [Tribolium castaneum][more]
gb|KYB25022.1|2.264e-1460.00brahma [Tribolium castaneum][more]
gb|KYB25018.1|2.635e-1460.00brahma [Tribolium castaneum][more]
XP_016773027.11.878e-1358.18PREDICTED: ATP-dependent helicase brm [Apis mellif... [more]
EAA07201.46.621e-1356.36AGAP010462-PA, partial [Anopheles gambiae str. PES... [more]
EFX72834.13.032e-1250.00hypothetical protein DAPPUDRAFT_215757 [Daphnia pu... [more]
EEB11322.11.053e-1153.70conserved hypothetical protein [Pediculus humanus ... [more]
AAN11774.12.666e-1152.73brahma, isoform D [Drosophila melanogaster][more]
AAN11773.12.666e-1152.73brahma, isoform C [Drosophila melanogaster][more]

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BLAST of EMLSAG00000000927 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25
Match NameE-valueIdentityDescription
gi|1073535903|gb|JAT85063.1|1.307e-1260.00hypothetical protein g.8451, partial [Pectinophora... [more]
gi|1133425729|ref|XP_019868655.1|7.757e-1257.89PREDICTED: LOW QUALITY PROTEIN: ATP-dependent heli... [more]
gi|1004395637|gb|EEZ97706.2|1.006e-1160.00brahma [Tribolium castaneum][more]
gi|1004395636|gb|KYB25021.1|1.006e-1160.00brahma [Tribolium castaneum][more]
gi|1004395638|gb|KYB25022.1|1.108e-1160.00brahma [Tribolium castaneum][more]
gi|642937367|ref|XP_008198808.1|1.289e-1160.00PREDICTED: ATP-dependent helicase brm isoform X2 [... [more]
gi|642937363|ref|XP_008198806.1|1.289e-1160.00PREDICTED: ATP-dependent helicase brm isoform X1 [... [more]
gi|642937369|ref|XP_008198809.1|1.393e-1160.00PREDICTED: ATP-dependent helicase brm isoform X3 [... [more]
gi|1041531429|ref|XP_017301764.1|1.514e-1152.63PREDICTED: ATP-dependent helicase brm [Diaphorina ... [more]
gi|930665571|gb|KPJ06699.1|2.896e-1158.18ATP-dependent helicase brm [Papilio machaon][more]

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BLAST of EMLSAG00000000927 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold495_size155559-snap-gene-0.321.592e-1456.14protein:Tk09239 transcript:maker-scaffold495_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1161supercontigLSalAtl2s1161:15715..16165 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1161-snap-gene-0.17
Biotypeprotein_coding
EvidenceIEA
NoteATP-dependent helicase brm
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000927 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000927EMLSAT00000000927-696774Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1161:15715..16165-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000927-683693 ID=EMLSAG00000000927-683693|Name=EMLSAG00000000927|organism=Lepeophtheirus salmonis|type=gene|length=451bp|location=Sequence derived from alignment at LSalAtl2s1161:15715..16165- (Lepeophtheirus salmonis)
ATGGGCGTCGCGTGTCCCCCACCAAGTGAAGGAGCTGAGTGATTTTCTCC
TCAACATGGCGCTGTACCTGTGACTGTATGTGGAGATTGAGCTGCGTGCC
CTGCGGCTAMTGAATTCGCAGTGGCAGSTCGACACGGRGGKGTTTGSTTC
CMCTCTGAGGGACACGACCCTGGAGACAGCCATCAATGTGAAAACGTAGC
AGAGAAGGAAGAAGCAAGGGGGTGGGGAGGCTTGCACCTCCGAGAAGTTG
GAGAAGCAACACCGGGTGGAAGCGGAGCGGAAGTGCAGACAGAGACACCA
GGAATTCTTATATACCATATTCAGTCATGTCAGGGATTTTCAACATTTTC
ATAAGAACAACCAAATGAAACTTCTAAAGACAATGCCGAGAAAGAGCAGA
AAAAAGAGGCAGAGAGACTTGAAAAAGAGAGATCAAGAGCCCTTATGGTA
G
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