EMLSAG00000000962, EMLSAG00000000962-683728 (gene) Lepeophtheirus salmonis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000962 vs. GO
Match: - (symbol:Mfge8 "MFGE8 long form" species:10116 "Rattus norvegicus" [GO:0001786 "phosphatidylserine binding" evidence=IEA] [GO:0005178 "integrin binding" evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA] [GO:0006910 "phagocytosis, recognition" evidence=IEA] [GO:0006911 "phagocytosis, engulfment" evidence=IEA] [GO:0007155 "cell adhesion" evidence=IEA] [GO:0008429 "phosphatidylethanolamine binding" evidence=IEA] [GO:0009897 "external side of plasma membrane" evidence=IEA] [GO:0019897 "extrinsic component of plasma membrane" evidence=IEA] [GO:0031012 "extracellular matrix" evidence=IEA] [GO:0070062 "extracellular vesicular exosome" evidence=IEA] [GO:2000427 "positive regulation of apoptotic cell clearance" evidence=IEA] InterPro:IPR000421 InterPro:IPR000742 Pfam:PF00008 Pfam:PF00754 PROSITE:PS01285 PROSITE:PS01286 PROSITE:PS50022 PROSITE:PS50026 SMART:SM00181 SMART:SM00231 RGD:3083 GO:GO:0070062 GO:GO:0005615 GO:GO:0006911 GO:GO:0009897 GO:GO:0007155 GO:GO:0019897 InterPro:IPR013032 PROSITE:PS00022 Gene3D:2.60.120.260 InterPro:IPR008979 SUPFAM:SSF49785 PROSITE:PS01186 GO:GO:0001786 GO:GO:0031012 GO:GO:0008429 GO:GO:0006910 GO:GO:2000427 HOGENOM:HOG000236278 HOVERGEN:HBG002385 OrthoDB:EOG7ZWD1D TreeFam:TF330156 GeneTree:ENSGT00740000114988 CTD:4240 KO:K17253 InterPro:IPR027060 PANTHER:PTHR10127:SF303 OMA:VAWHNRI RefSeq:NP_001035276.1 UniGene:Rn.3742 GeneID:25277 KEGG:rno:25277 NextBio:605981 EMBL:AABR06006560 EMBL:DQ455823 Ensembl:ENSRNOT00000067889 InParanoid:Q1PBJ1 Genevestigator:Q1PBJ1 Uniprot:Q1PBJ1) HSP 1 Score: 41.9726 bits (97), Expect = 4.281e-4 Identity = 19/35 (54.29%), Postives = 22/35 (62.86%), Query Frame = 0
Query: 71 AVPTTPTPTTSKPTTPKPDTAPPTEGTTTPKPDTE 105
AVPTT PTT+ PTT P TA PT TP P+ +
Sbjct: 124 AVPTTAVPTTAIPTTAVPTTAVPTTAVPTPAPNPD 158
BLAST of EMLSAG00000000962 vs. L. salmonis peptides
Match: EMLSAP00000000962 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1169:118806:119443:1 gene:EMLSAG00000000962 transcript:EMLSAT00000000962 description:"maker-LSalAtl2s1169-augustus-gene-1.10") HSP 1 Score: 212.231 bits (539), Expect = 8.490e-72 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
Query: 1 MESQKKRVLILLIFSITCLQIGTSKSMNNRFPWTKNLDEEFVNEVKNIRNSLRVIETNINNSKPDPTXPTAVPTTPTPTTSKPTTPKPDTAPPTEGTTTPKPDTESPTEG 110
MESQKKRVLILLIFSITCLQIGTSKSMNNRFPWTKNLDEEFVNEVKNIRNSLRVIETNINNSKPDPTXPTAVPTTPTPTTSKPTTPKPDTAPPTEGTTTPKPDTESPTEG
Sbjct: 1 MESQKKRVLILLIFSITCLQIGTSKSMNNRFPWTKNLDEEFVNEVKNIRNSLRVIETNINNSKPDPTXPTAVPTTPTPTTSKPTTPKPDTAPPTEGTTTPKPDTESPTEG 110
BLAST of EMLSAG00000000962 vs. L. salmonis peptides
Match: EMLSAP00000007418 (pep:novel supercontig:LSalAtl2s:LSalAtl2s421:428848:431105:-1 gene:EMLSAG00000007418 transcript:EMLSAT00000007418 description:"maker-LSalAtl2s421-augustus-gene-3.116") HSP 1 Score: 135.191 bits (339), Expect = 1.835e-40 Identity = 75/109 (68.81%), Postives = 82/109 (75.23%), Query Frame = 0
Query: 1 MESQKKRVLILLIFSITCLQIGTSKSMNNRFPWTKNLDEEFVNEVKNIRNSLRVIETNINNSKPDPTXPTAVPTTPTPTTSKPTTPKPDTAPPTEGTTTPKPDTESPTE 109
MESQKK VLILLI SITCLQ GTSKSMNNRFPW KNLDE+FV EVKNI+N+L++IETNINN KPD TA PT T TPKP T PTEGTTTP P +PT+
Sbjct: 1 MESQKKGVLILLIVSITCLQTGTSKSMNNRFPWMKNLDEDFVKEVKNIQNNLKIIETNINN-KPD----TAAPTEGT------XTPKPXTESPTEGTTTPNPTMAAPTD 98
BLAST of EMLSAG00000000962 vs. L. salmonis peptides
Match: EMLSAP00000011795 (pep:novel supercontig:LSalAtl2s:LSalAtl2s8246:3:495:-1 gene:EMLSAG00000011795 transcript:EMLSAT00000011795 description:"maker-LSalAtl2s8246-augustus-gene-0.2") HSP 1 Score: 129.798 bits (325), Expect = 4.658e-39 Identity = 89/122 (72.95%), Postives = 96/122 (78.69%), Query Frame = 0
Query: 1 MESQKKRVLILLIFSITCLQIGTSKSMNNRFPWTKNLDEEFVNEVKNIRNSLRVIETNINNSKPDPTXPTAVPTTPTPTTSKPTT-------------PKPDTAPPTEGTTTPKPDTESPTE 109
MESQ++ VLILL+FSITCLQIGTSKSMNNRFPW NLDEEFV EVK I+NSL+VIETNINNSKP PTXP AVPTTPTPTTSKPTT PKPDT TEGT PKP T++PTE
Sbjct: 1 MESQQRGVLILLVFSITCLQIGTSKSMNNRFPWMMNLDEEFVKEVKTIQNSLKVIETNINNSKPHPTXPXAVPTTPTPTTSKPTTPKPTTAPTEATKIPKPDTTATTEGTKXPKPTTDAPTE 122 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000962 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 1
BLAST of EMLSAG00000000962 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 0
BLAST of EMLSAG00000000962 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000000962 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000962 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000962 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000962 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1169:118806..119443+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000962-683728 ID=EMLSAG00000000962-683728|Name=EMLSAG00000000962|organism=Lepeophtheirus salmonis|type=gene|length=638bp|location=Sequence derived from alignment at LSalAtl2s1169:118806..119443+ (Lepeophtheirus salmonis)back to top Add to Basket
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