EMLSAG00000000967, EMLSAG00000000967-683733 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000967
Unique NameEMLSAG00000000967-683733
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000967 vs. C. finmarchicus
Match: gi|592955165|gb|GAXK01003388.1| (TSA: Calanus finmarchicus comp186833_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 1.930e+0
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 0 
Query:   50 SGGQIIAVQNPAL 62
            SGGQIIAVQNPAL
Sbjct: 2002 SGGQIIAVQNPAL 2040
[Close]
BLAST of EMLSAG00000000967 vs. C. finmarchicus
Match: gi|592955166|gb|GAXK01003387.1| (TSA: Calanus finmarchicus comp186833_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 1.931e+0
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 0 
Query:   50 SGGQIIAVQNPAL 62
            SGGQIIAVQNPAL
Sbjct: 2002 SGGQIIAVQNPAL 2040
[Close]
BLAST of EMLSAG00000000967 vs. C. finmarchicus
Match: gi|592955167|gb|GAXK01003386.1| (TSA: Calanus finmarchicus comp186833_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 1.932e+0
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 0 
Query:   50 SGGQIIAVQNPAL 62
            SGGQIIAVQNPAL
Sbjct: 2002 SGGQIIAVQNPAL 2040
[Close]
BLAST of EMLSAG00000000967 vs. C. finmarchicus
Match: gi|592955168|gb|GAXK01003385.1| (TSA: Calanus finmarchicus comp186833_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 1.932e+0
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 0 
Query:   50 SGGQIIAVQNPAL 62
            SGGQIIAVQNPAL
Sbjct: 2002 SGGQIIAVQNPAL 2040
[Close]
BLAST of EMLSAG00000000967 vs. C. finmarchicus
Match: gi|592955169|gb|GAXK01003384.1| (TSA: Calanus finmarchicus comp186833_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 1.932e+0
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 0 
Query:   50 SGGQIIAVQNPAL 62
            SGGQIIAVQNPAL
Sbjct: 2002 SGGQIIAVQNPAL 2040
[Close]
BLAST of EMLSAG00000000967 vs. C. finmarchicus
Match: gi|592955173|gb|GAXK01003383.1| (TSA: Calanus finmarchicus comp186833_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 1.933e+0
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 0 
Query:   50 SGGQIIAVQNPAL 62
            SGGQIIAVQNPAL
Sbjct: 2002 SGGQIIAVQNPAL 2040
[Close]
BLAST of EMLSAG00000000967 vs. L. salmonis peptides
Match: EMLSAP00000000967 (pep:novel supercontig:LSalAtl2s:LSalAtl2s116:1094829:1096607:1 gene:EMLSAG00000000967 transcript:EMLSAT00000000967 description:"maker-LSalAtl2s116-snap-gene-11.10")

HSP 1 Score: 237.654 bits (605), Expect = 1.477e-81
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 
Query:    1 MIPSWSPLFYVHVLIEGEKTDDDSCQGGVDPLVNNSSSSINLVSNILSTSGGQIIAVQNPALFIRNQGRESSSPVSSIIPSPNNTSIHSISTRDSPPKRRRKSSKSSPKFFVEYRFVFK 119
            MIPSWSPLFYVHVLIEGEKTDDDSCQGGVDPLVNNSSSSINLVSNILSTSGGQIIAVQNPALFIRNQGRESSSPVSSIIPSPNNTSIHSISTRDSPPKRRRKSSKSSPKFFVEYRFVFK
Sbjct:    1 MIPSWSPLFYVHVLIEGEKTDDDSCQGGVDPLVNNSSSSINLVSNILSTSGGQIIAVQNPALFIRNQGRESSSPVSSIIPSPNNTSIHSISTRDSPPKRRRKSSKSSPKFFVEYRFVFK 119
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000967 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000967 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592955165|gb|GAXK01003388.1|1.930e+0100.00TSA: Calanus finmarchicus comp186833_c0_seq6 trans... [more]
gi|592955166|gb|GAXK01003387.1|1.931e+0100.00TSA: Calanus finmarchicus comp186833_c0_seq5 trans... [more]
gi|592955167|gb|GAXK01003386.1|1.932e+0100.00TSA: Calanus finmarchicus comp186833_c0_seq4 trans... [more]
gi|592955168|gb|GAXK01003385.1|1.932e+0100.00TSA: Calanus finmarchicus comp186833_c0_seq3 trans... [more]
gi|592955169|gb|GAXK01003384.1|1.932e+0100.00TSA: Calanus finmarchicus comp186833_c0_seq2 trans... [more]
gi|592955173|gb|GAXK01003383.1|1.933e+0100.00TSA: Calanus finmarchicus comp186833_c0_seq1 trans... [more]
back to top
BLAST of EMLSAG00000000967 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000009671.477e-81100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s116:10948... [more]
back to top
BLAST of EMLSAG00000000967 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000967 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000967 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000967 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s116supercontigLSalAtl2s116:1094829..1096607 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s116-snap-gene-11.10
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000967 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000967EMLSAT00000000967-696814Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s116:1094829..1096607+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000967-683733 ID=EMLSAG00000000967-683733|Name=EMLSAG00000000967|organism=Lepeophtheirus salmonis|type=gene|length=1779bp|location=Sequence derived from alignment at LSalAtl2s116:1094829..1096607+ (Lepeophtheirus salmonis)
ATGATTCCCTCATGGTCCCCATTATTTTATGTTCATGTCCTCATGTATAG
GAAAAATAGAAGCGAAGAATAATAAAATTAGAGCCACTCAACCAATCAAC
TCTTTTATGTGATGTGTAGTTACTATAGAGACTCTAAGGAAAGAGGAGAC
AAGCCACGGCGGMACATCACTCAAAACAAAAATAGACTCTTCATTTTGTT
ATCAGCTGMCGTATTTCTGATCATTTATCCTATTCTGTGTTCTGAACAAC
CTTGATTGGTTGAATTAGAATTAGTTATTGTTCAGCTGCGAACAATTTCC
AATAATCATTCTACGATAGTTCCATGGTTAGGACCGTTTTTTCTGAAAAG
AAAGGTTGTGTGATATAATGAAGGTAAAGACGTGAAGCCGGCTGAAGTAA
TAATAAAACAGAAAAGTATGTATGTAAATTAGGTTCACTTATTCACACAC
CCTTGATCATAAAATGATTAGGAATGGGGTTTTATAGAGTATAAAACTTT
TATGTTTATCTACAAAAAATAACTTCCCTTAAAATGACGTGATTCAAAAG
ATGAACATAGTGCACTCAGACAATTTTAAACCTCTATGAATTAAAGGTAA
TAATTTCCCCCCTCCCCTTTTATGTTTGTCACCTCTTTCTTTAGAGCAGG
GATCGGATAACTTTTTTTAGCATTGTCCTAAAAGAATTTAGCCCAATCTA
GGGCAGGGGCGTCGTCAGTATTATATATATTTTTTTTTTTGGGMYGGGGG
YGGGTGGAATTTTCTTAGAAAACCATAGCATAATTTGATCGAATGTCCCT
TTTTTTTTTTAATCTCTCAATCCCCCCCCCCTCCCCCTTCGGACGCCCCT
GTAGTGGTATGAAGTTTATTTCATTACAGTAGTAAGTAAAATTCCTTTTT
CATGGGATGGAAATAACATCTACTACCATTACCCCAAAAAAATTTCAATA
TTAAATTTTCTGCAAAATAAATACCTTAATTCGGAAGGGGCCTACAGCCC
CTCCATCCCYCCCCTTGTGGACGCCCATTAGTTATGTACCATTAGTAAAA
TATTCTTTCAAAATCRCTAGTACCCCTTTGAGTGCCTCCCTATTTGTGAA
CCACTGATCTAAATATTAACCATTTTATATTTATTTTTTATAGCTTCAAT
TCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCGCCATTCTGGAAACTCAAGTGAAGGAGAAAAAACGGACGACG
ATAGTTGTCAAGGAGGAGTAGATCCCCTTGTCAATAATAGTTCCTCATCC
ATTAATCTAGTTAGTAATGTATGTCTCATATTCTTTTCACTTAAAAATGT
CTTAAATTGATGTATAGTTATCAAAAATTTTGTATTACAGATTTTGTCCA
CAAGCGGAGGTCAAATTATAGCAGTTCAAAATCCAGCTCTATTCATTCGA
AATCAAGGACGAGAAAGCTCCTCTCCCGTCTCTTCCATTATTCCATCTCC
AAACAACACTTCTATTCATTCCATCTCTACTCGAGACTCTCCGCCCAAAC
GTCGACGAAAGAGCTCTAAATCTTCTCCAAGTAGCGTCTCSAGMAGCAGC
AGMTGCAATGGACTTAATCTTAGGGAAAGCCTATAAAGAGGCCTCCTCTT
CCAATACCCCGTGCATGTTGTGATTATTTTTTTTTTTTTTTAAGAATTCT
TTGTAGAGTATCGATTTGTATTTAAATGA
back to top
Add to Basket