EMLSAG00000000978, EMLSAG00000000978-683744 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000978 vs. C. finmarchicus
Match: gi|592784607|gb|GAXK01169961.1| (TSA: Calanus finmarchicus comp1864_c6_seq8 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 1.338e+0 Identity = 35/149 (23.49%), Postives = 63/149 (42.28%), Query Frame = 0 Query: 11 RVSGRVFLLXXXXXXXXXXXXTNDTLIYIITQLFTTHNKKINMKVVFCIILLCGSGSAYPQGHYQEQHYEPRRAIATLNAFQRF--SPNQGLQTQVPTKRLNDDDLDITSILEK--SDSNWSPDFVEMLQNMKEEGRSIKVNSDQDDMN 155 R SGR+ L N LI+I + FT + I + ++ +I++ S S QE + + + R +Q TQ+ + N+ + +L K DS W P +++LQ ++EEG ++ DD++ Sbjct: 43 RASGRLVHLLL*ALKVSLAFIIN--LIFITVEQFTINPLFITVSLLRALIIIPSSISPLETIKEQESRWHQLLGVPSNRLVIRHLHQVHQTKHTQLAVMKTNEAVCVMDPLLNKVTKDSTWHPWDLDLLQGVQEEGGVVE-QGGYDDLD 480
BLAST of EMLSAG00000000978 vs. C. finmarchicus
Match: gi|592784610|gb|GAXK01169958.1| (TSA: Calanus finmarchicus comp1864_c6_seq5 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 3.141e+0 Identity = 35/149 (23.49%), Postives = 63/149 (42.28%), Query Frame = 0 Query: 11 RVSGRVFLLXXXXXXXXXXXXTNDTLIYIITQLFTTHNKKINMKVVFCIILLCGSGSAYPQGHYQEQHYEPRRAIATLNAFQRF--SPNQGLQTQVPTKRLNDDDLDITSILEK--SDSNWSPDFVEMLQNMKEEGRSIKVNSDQDDMN 155 R SGR+ L N LI+I + FT + I + ++ +I++ S S QE + + + R +Q TQ+ + N+ + +L K DS W P +++LQ ++EEG ++ DD++ Sbjct: 367 RASGRLVHLLL*ALKVSLAFIIN--LIFITVEQFTINPLFITVSLLRALIIIPSSISPLETIKEQESRWHQLLGVPSNRLVIRHLHQVHQTKHTQLAVMKTNEAVCVMDPLLNKMAKDSTWHPWDLDLLQGVQEEGGVVE-QGGYDDLD 804
BLAST of EMLSAG00000000978 vs. C. finmarchicus
Match: gi|592784619|gb|GAXK01169949.1| (TSA: Calanus finmarchicus comp1864_c5_seq4 transcribed RNA sequence) HSP 1 Score: 30.4166 bits (67), Expect = 4.685e+0 Identity = 35/149 (23.49%), Postives = 63/149 (42.28%), Query Frame = 0 Query: 11 RVSGRVFLLXXXXXXXXXXXXTNDTLIYIITQLFTTHNKKINMKVVFCIILLCGSGSAYPQGHYQEQHYEPRRAIATLNAFQRF--SPNQGLQTQVPTKRLNDDDLDITSILEK--SDSNWSPDFVEMLQNMKEEGRSIKVNSDQDDMN 155 R SGR+ L N LI+I + FT + I + ++ +I++ S S QE + + + R +Q TQ+ + N+ + +L K DS W P +++LQ ++EEG ++ DD++ Sbjct: 69 RASGRLVHLLL*ALKVSLAFIIN--LIFITVEQFTINPLFITVSLLRALIIIPSSISPLETIKEQESRWHQLLGVPSNRLVIRHLHQVHQTKHTQLAVMKTNEAVCVMDPLLNKVTKDSTWHPWDLDLLQGVQEEGGVVE-QGGYDDLD 506
BLAST of EMLSAG00000000978 vs. C. finmarchicus
Match: gi|592784618|gb|GAXK01169950.1| (TSA: Calanus finmarchicus comp1864_c5_seq5 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 7.040e+0 Identity = 29/124 (23.39%), Postives = 56/124 (45.16%), Query Frame = 0 Query: 36 LIYIITQLFTTHNKKINMKVVFCIILLCGSGSAYPQGHYQEQHYEPRRAIATLNAFQRF--SPNQGLQTQVPTKRLNDDDLDITSILEK--SDSNWSPDFVEMLQNMKEEGRSIKVNSDQDDMN 155 LI+I + FT + I + ++ +I++ S S QE + + + R +Q TQ+ + N+ + +L K DS W P +++LQ ++EEG ++ DD++ Sbjct: 51 LIFITVEQFTINPLFITVSLLRALIIIPSSISPLETIKEQESRWHQLLGVPSNRLVIRHLHQVHQTKHTQLAVMKTNEAVCVMDPLLNKVTKDSTWHPWDLDLLQGVQEEGGVVE-QGGYDDLD 419
BLAST of EMLSAG00000000978 vs. C. finmarchicus
Match: gi|592784620|gb|GAXK01169948.1| (TSA: Calanus finmarchicus comp1864_c5_seq3 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 7.090e+0 Identity = 29/124 (23.39%), Postives = 56/124 (45.16%), Query Frame = 0 Query: 36 LIYIITQLFTTHNKKINMKVVFCIILLCGSGSAYPQGHYQEQHYEPRRAIATLNAFQRF--SPNQGLQTQVPTKRLNDDDLDITSILEK--SDSNWSPDFVEMLQNMKEEGRSIKVNSDQDDMN 155 LI+I + FT + I + ++ +I++ S S QE + + + R +Q TQ+ + N+ + +L K DS W P +++LQ ++EEG ++ DD++ Sbjct: 286 LIFITVEQFTINPLFITVSLLRALIIIPSSISPLETIKEQESRWHQLLGVPSNRLVIRHLHQVHQTKHTQLAVMKTNEAVCVMDPLLNKVTKDSTWHPWDLDLLQGVQEEGGVVE-QGGYDDLD 654
BLAST of EMLSAG00000000978 vs. C. finmarchicus
Match: gi|592784621|gb|GAXK01169947.1| (TSA: Calanus finmarchicus comp1864_c5_seq2 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 7.137e+0 Identity = 29/124 (23.39%), Postives = 56/124 (45.16%), Query Frame = 0 Query: 36 LIYIITQLFTTHNKKINMKVVFCIILLCGSGSAYPQGHYQEQHYEPRRAIATLNAFQRF--SPNQGLQTQVPTKRLNDDDLDITSILEK--SDSNWSPDFVEMLQNMKEEGRSIKVNSDQDDMN 155 LI+I + FT + I + ++ +I++ S S QE + + + R +Q TQ+ + N+ + +L K DS W P +++LQ ++EEG ++ DD++ Sbjct: 542 LIFITVEQFTINPLFITVSLLRALIIIPSSISPLETIKEQESRWHQLLGVPSNRLVIRHLHQVHQTKHTQLAVMKTNEAVCVMDPLLNKVTKDSTWHPWDLDLLQGVQEEGGVVE-QGGYDDLD 910
BLAST of EMLSAG00000000978 vs. C. finmarchicus
Match: gi|592784622|gb|GAXK01169946.1| (TSA: Calanus finmarchicus comp1864_c5_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 7.158e+0 Identity = 29/124 (23.39%), Postives = 56/124 (45.16%), Query Frame = 0 Query: 36 LIYIITQLFTTHNKKINMKVVFCIILLCGSGSAYPQGHYQEQHYEPRRAIATLNAFQRF--SPNQGLQTQVPTKRLNDDDLDITSILEK--SDSNWSPDFVEMLQNMKEEGRSIKVNSDQDDMN 155 LI+I + FT + I + ++ +I++ S S QE + + + R +Q TQ+ + N+ + +L K DS W P +++LQ ++EEG ++ DD++ Sbjct: 669 LIFITVEQFTINPLFITVSLLRALIIIPSSISPLETIKEQESRWHQLLGVPSNRLVIRHLHQVHQTKHTQLAVMKTNEAVCVMDPLLNKVTKDSTWHPWDLDLLQGVQEEGGVVE-QGGYDDLD 1037
BLAST of EMLSAG00000000978 vs. L. salmonis peptides
Match: EMLSAP00000000978 (pep:novel supercontig:LSalAtl2s:LSalAtl2s116:1659443:1676803:1 gene:EMLSAG00000000978 transcript:EMLSAT00000000978 description:"maker-LSalAtl2s116-augustus-gene-16.10") HSP 1 Score: 413.305 bits (1061), Expect = 2.544e-148 Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0 Query: 1 EIKGSVPPSLRVSGRVFLLPKSPHPKKSQSSTNDTLIYIITQLFTTHNKKINMKVVFCIILLCGSGSAYPQGHYQEQHYEPRRAIATLNAFQRFSPNQGLQTQVPTKRLNDDDLDITSILEKSDSNWSPDFVEMLQNMKEEGRSIKVNSDQDDMNLVQSPNSVICKMEPYNTCYHVAPNGDILLSLVRQRPMRLLRIY 198 EIKGSVPPSLRVSGRVFLLPKSPHPKKSQSSTNDTLIYIITQLFTTHNKKINMKVVFCIILLCGSGSAYPQGHYQEQHYEPRRAIATLNAFQRFSPNQGLQTQVPTKRLNDDDLDITSILEKSDSNWSPDFVEMLQNMKEEGRSIKVNSDQDDMNLVQSPNSVICKMEPYNTCYHVAPNGDILLSLVRQRPMRLLRIY Sbjct: 1 EIKGSVPPSLRVSGRVFLLPKSPHPKKSQSSTNDTLIYIITQLFTTHNKKINMKVVFCIILLCGSGSAYPQGHYQEQHYEPRRAIATLNAFQRFSPNQGLQTQVPTKRLNDDDLDITSILEKSDSNWSPDFVEMLQNMKEEGRSIKVNSDQDDMNLVQSPNSVICKMEPYNTCYHVAPNGDILLSLVRQRPMRLLRIY 198
BLAST of EMLSAG00000000978 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold187_size272365-snap-gene-1.26 (protein:Tk10322 transcript:maker-scaffold187_size272365-snap-gene-1.26-mRNA-1 annotation:"trna -lysidine synthetase") HSP 1 Score: 47.7506 bits (112), Expect = 1.387e-7 Identity = 26/91 (28.57%), Postives = 46/91 (50.55%), Query Frame = 0 Query: 121 EKSDSNWSPDFVEMLQNMKEEGRSIKVNSDQ----------DDMNLVQSPNS---VICKMEPYNTCYHVAPNGDILLSLVRQRPMRLLRIY 198 EK W+ +++L MK+ + +V + + + +P + VICKM+P+N CY + P G + + +RP+RLLR+Y Sbjct: 18 EKHSLKWNMAMIKLLLAMKKGDQDQEVEDELLVNNEIPMKLKEAEITTAPKAQGPVICKMKPFNICYRINPQGQSVHTGGNRRPVRLLRVY 108 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000978 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000978 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 7
BLAST of EMLSAG00000000978 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000978 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000978 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000978 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000978 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s116:1659443..1676803+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000978-683744 ID=EMLSAG00000000978-683744|Name=EMLSAG00000000978|organism=Lepeophtheirus salmonis|type=gene|length=17361bp|location=Sequence derived from alignment at LSalAtl2s116:1659443..1676803+ (Lepeophtheirus salmonis)back to top Add to Basket
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