EMLSAG00000000979, EMLSAG00000000979-683745 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000979
Unique NameEMLSAG00000000979-683745
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000979 vs. C. finmarchicus
Match: gi|592844518|gb|GAXK01113026.1| (TSA: Calanus finmarchicus comp95230_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 43.8986 bits (102), Expect = 2.604e-5
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 0 
Query:   52 RKLRKAVTGHPDKKVSDSLHEESVRKKVKKIDAMSFSLGVLHV 94
            R+LRK VTG+P+KKV D L E     +VK +D +SF+ GV+ +
Sbjct: 1028 RRLRKVVTGNPEKKVRDYLKEVP---QVKLVDKLSFTFGVMCI 1147
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BLAST of EMLSAG00000000979 vs. C. finmarchicus
Match: gi|592844519|gb|GAXK01113025.1| (TSA: Calanus finmarchicus comp95230_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 43.8986 bits (102), Expect = 2.609e-5
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 0 
Query:   52 RKLRKAVTGHPDKKVSDSLHEESVRKKVKKIDAMSFSLGVLHV 94
            R+LRK VTG+P+KKV D L E     +VK +D +SF+ GV+ +
Sbjct: 1035 RRLRKVVTGNPEKKVRDYLKEVP---QVKLVDKLSFTFGVMCI 1154
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BLAST of EMLSAG00000000979 vs. C. finmarchicus
Match: gi|592835663|gb|GAXK01121881.1| (TSA: Calanus finmarchicus comp106956_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 43.5134 bits (101), Expect = 3.175e-5
Identity = 23/55 (41.82%), Postives = 33/55 (60.00%), Query Frame = 0 
Query:   38 KVIEAHEILHNKLVRKLRKAVTGHPDKKVSDSLHEESVRKKVKKIDAMSFSLGVL 92
            K+ E  +    +  RK RKAVTG P+K++ D + E     +VK ID +SF+ GVL
Sbjct:  320 KIQEVRKEAQGRAQRKWRKAVTGDPEKRIRDHMKEVP---QVKMIDKLSFTFGVL 475
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BLAST of EMLSAG00000000979 vs. C. finmarchicus
Match: gi|592835664|gb|GAXK01121880.1| (TSA: Calanus finmarchicus comp106956_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 43.5134 bits (101), Expect = 3.385e-5
Identity = 23/55 (41.82%), Postives = 33/55 (60.00%), Query Frame = 0 
Query:   38 KVIEAHEILHNKLVRKLRKAVTGHPDKKVSDSLHEESVRKKVKKIDAMSFSLGVL 92
            K+ E  +    +  RK RKAVTG P+K++ D + E     +VK ID +SF+ GVL
Sbjct:  320 KIQEVRKEAQGRAQRKWRKAVTGDPEKRIRDHMKEVP---QVKMIDKLSFTFGVL 475
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BLAST of EMLSAG00000000979 vs. C. finmarchicus
Match: gi|592815872|gb|GAXK01138696.1| (TSA: Calanus finmarchicus comp511691_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 2.231e-4
Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 0 
Query:   28 FSISLHEVSAKVIEAHEILHNKLVRKLRKAVTGHPDKKVSDSLHEESVRKKVKKIDAMSFSLGV 91
            F ++  ++ + + EA E    K  R  RKAVTG+P+KK+ D + E     +VK ID +SF  GV
Sbjct: 1099 FKLAESQIGSHIAEAKE----KGQRSWRKAVTGNPEKKIRDYMKEVP---QVKFIDKVSFFFGV 1269
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BLAST of EMLSAG00000000979 vs. C. finmarchicus
Match: gi|592780240|gb|GAXK01174328.1| (TSA: Calanus finmarchicus comp1111485_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 40.4318 bits (93), Expect = 2.436e-4
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 0 
Query:   52 RKLRKAVTGHPDKKVSDSLHEESVRKKVKKIDAMSFSLGVLHV 94
            R  RKAVTG+P+KK+ D + E     +VK ID +SF  GV  +
Sbjct:  290 RSWRKAVTGNPEKKIGDFMKE---VPQVKFIDKVSFFFGVTCI 409
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BLAST of EMLSAG00000000979 vs. C. finmarchicus
Match: gi|592858063|gb|GAXK01099499.1| (TSA: Calanus finmarchicus comp447358_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 37.7354 bits (86), Expect = 2.417e-3
Identity = 22/59 (37.29%), Postives = 33/59 (55.93%), Query Frame = 0 
Query:   34 EVSAKVIEAHEILHNKLVRKLRKAVTGHPDKKVSDSLHEESVRKKVKKIDAMSFSLGVL 92
            E+  K+ E  +    +  +K RKAVTG  +K V + + E     +VK ID +SF+ GVL
Sbjct:  760 EMKDKMREVRKDTQGRAQKKWRKAVTGDAEKSVREHMKEVP---QVKMIDKISFTFGVL 927
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BLAST of EMLSAG00000000979 vs. C. finmarchicus
Match: gi|592858064|gb|GAXK01099498.1| (TSA: Calanus finmarchicus comp447358_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 37.7354 bits (86), Expect = 2.496e-3
Identity = 22/59 (37.29%), Postives = 33/59 (55.93%), Query Frame = 0 
Query:   34 EVSAKVIEAHEILHNKLVRKLRKAVTGHPDKKVSDSLHEESVRKKVKKIDAMSFSLGVL 92
            E+  K+ E  +    +  +K RKAVTG  +K V + + E     +VK ID +SF+ GVL
Sbjct:  760 EMKDKMREVRKDTQGRAQKKWRKAVTGDAEKSVREHMKEVP---QVKMIDKISFTFGVL 927
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BLAST of EMLSAG00000000979 vs. C. finmarchicus
Match: gi|592815099|gb|GAXK01139469.1| (TSA: Calanus finmarchicus comp3817402_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 3.348e-2
Identity = 19/51 (37.25%), Postives = 27/51 (52.94%), Query Frame = 0 
Query:    7 RKSFSDEE--LRNNLDDRFRVPSFSISLHEVSAKVIEAHEILHNKLVRKLR 55
            + SF + E  LRNN    FR+P   I+ H+VSAK    + + H  L   +R
Sbjct:   35 KASFLEREIVLRNNRMYSFRIPLLHINFHKVSAKPYPPYWLWHLHLTSPIR 187
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BLAST of EMLSAG00000000979 vs. C. finmarchicus
Match: gi|592856323|gb|GAXK01101221.1| (TSA: Calanus finmarchicus comp7453_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 8.155e+0
Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = 0 
Query:   55 RKAVTGHPDKKVSDSLHEESVRKKVK 80
            R A   HP++K ++ L EE+V  KVK
Sbjct:  379 RSAYVPHPEEKFAEGLIEETVGNKVK 456
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BLAST of EMLSAG00000000979 vs. L. salmonis peptides
Match: EMLSAP00000000979 (pep:novel supercontig:LSalAtl2s:LSalAtl2s116:1677984:1678607:-1 gene:EMLSAG00000000979 transcript:EMLSAT00000000979 description:"maker-LSalAtl2s116-augustus-gene-16.12")

HSP 1 Score: 185.652 bits (470), Expect = 7.253e-62
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 
Query:    1 MDSLALRKSFSDEELRNNLDDRFRVPSFSISLHEVSAKVIEAHEILHNKLVRKLRKAVTGHPDKKVSDSLHEESVRKKVKKIDAMSFSLGVLHVS 95
            MDSLALRKSFSDEELRNNLDDRFRVPSFSISLHEVSAKVIEAHEILHNKLVRKLRKAVTGHPDKKVSDSLHEESVRKKVKKIDAMSFSLGVLHVS
Sbjct:    1 MDSLALRKSFSDEELRNNLDDRFRVPSFSISLHEVSAKVIEAHEILHNKLVRKLRKAVTGHPDKKVSDSLHEESVRKKVKKIDAMSFSLGVLHVS 95
[Close]
BLAST of EMLSAG00000000979 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold5_size1054832-snap-gene-5.7 (protein:Tk04040 transcript:maker-scaffold5_size1054832-snap-gene-5.7-mRNA-1 annotation:"Protein of unknown function DUF2838")

HSP 1 Score: 47.7506 bits (112), Expect = 4.482e-8
Identity = 25/64 (39.06%), Postives = 40/64 (62.50%), Query Frame = 0 
Query:   32 LHEVSAKVIEAHEILHNKLVRKLRKAVTGHPDKKVSDSLHEESVRKKVKKIDAMSFSLGVLHVS 95
            L E   K+I A + +  K  +++R+ +TG P+K++ D L EE    +VK ID  SF+LGVL ++
Sbjct:  565 LKEARTKIINAGKQVPEKTKKQMREVITGDPNKRIRDHLKEEP---QVKMIDKFSFTLGVLVIT 625
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000979 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000979 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 11
Match NameE-valueIdentityDescription
gi|592844518|gb|GAXK01113026.1|2.604e-548.84TSA: Calanus finmarchicus comp95230_c1_seq2 transc... [more]
gi|592844519|gb|GAXK01113025.1|2.609e-548.84TSA: Calanus finmarchicus comp95230_c1_seq1 transc... [more]
gi|592835663|gb|GAXK01121881.1|3.175e-541.82TSA: Calanus finmarchicus comp106956_c1_seq2 trans... [more]
gi|592835664|gb|GAXK01121880.1|3.385e-541.82TSA: Calanus finmarchicus comp106956_c1_seq1 trans... [more]
gi|592815872|gb|GAXK01138696.1|2.231e-439.06TSA: Calanus finmarchicus comp511691_c0_seq1 trans... [more]
gi|592780240|gb|GAXK01174328.1|2.436e-446.51TSA: Calanus finmarchicus comp1111485_c1_seq1 tran... [more]
gi|592858063|gb|GAXK01099499.1|2.417e-337.29TSA: Calanus finmarchicus comp447358_c0_seq2 trans... [more]
gi|592858064|gb|GAXK01099498.1|2.496e-337.29TSA: Calanus finmarchicus comp447358_c0_seq1 trans... [more]
gi|592815099|gb|GAXK01139469.1|3.348e-237.25TSA: Calanus finmarchicus comp3817402_c0_seq1 tran... [more]
gi|592856323|gb|GAXK01101221.1|8.155e+046.15TSA: Calanus finmarchicus comp7453_c0_seq1 transcr... [more]

Pages

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BLAST of EMLSAG00000000979 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000009797.253e-62100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s116:16779... [more]
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BLAST of EMLSAG00000000979 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000979 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000979 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000979 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold5_size1054832-snap-gene-5.74.482e-839.06protein:Tk04040 transcript:maker-scaffold5_size105... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s116supercontigLSalAtl2s116:1677984..1678607 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s116-augustus-gene-16.12
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000979 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000979EMLSAT00000000979-696826Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s116:1677984..1678607-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000979-683745 ID=EMLSAG00000000979-683745|Name=EMLSAG00000000979|organism=Lepeophtheirus salmonis|type=gene|length=624bp|location=Sequence derived from alignment at LSalAtl2s116:1677984..1678607- (Lepeophtheirus salmonis)
ATGGATTCCCTCGCTCTTCGGAAGTCTTTTTCTGATGAAGAGCTAAGAAA
TAATCTCGATGACCGCTTCCGTGTACCATCTTTTTCCATTTCTCTACATG
AAGTATCTGCTAAGGTGATTGAAGCTCATGAGATCCTGCATAATAAATTA
GTGAGGAAGCTACGAAAAGCAGTGACAGGGCACCCAGATAAGAAAGTGAG
TGACTCTCTTCACGAAGAAAGTGTGAGGAAAAAAGTTAAGAAGATTGATG
CTATGAGTTTTTCACTGGGAGTAAGCTTATGTTTTTTTGTGGAGTTGGTA
TTTTTCTCGTATCCCAGATGGTTTCCAAGCCTTTATGTTCTACTCATTTC
TTCTTTGTTGGTTCTTAGGTATGTTCGTAGGTACATTTATAATTAAGTTT
TGAGCTTATTCATATTTAGTGGGGGTTTTTTTTACCAATTTATGTATGCG
TTTCTTAAAATAATGAAGTACACTCTGAAATTTTCCAGTTGTTATTTTAA
CAACTGCACAGAGTAACATTTTATAAGAATGTGACTACATAATATATTTT
GAAGGAAAATTAAATACTTTTTTCAATTAAAATAAGTATTTCTCTATTTT
TTTCAGGTTCTTCACGTATCGTAA
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