EMLSAG00000000979, EMLSAG00000000979-683745 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000979
Unique NameEMLSAG00000000979-683745
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000979 vs. C. finmarchicus
Match: gi|592798180|gb|GAXK01156388.1| (TSA: Calanus finmarchicus comp387388_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 8.513e+0
Identity = 17/74 (22.97%), Postives = 32/74 (43.24%), Query Frame = 0 
Query:   21 DRFRVPSFSISLHEVSAKVIEAHEILHNKLVRKLRKAVTGHPDKKVSDSLHEESVRKKVKKIDAMSFSLGVLHV 94
            DRFR P       ++  ++   +E+L +   RK    +  HP++   +  +    R+   KID     L ++ V
Sbjct:  266 DRFRTPEEKKDAEQMFMRIASGYEVLRDDETRKEYDYMLDHPEETYGN-YYRYYKRRMAPKIDVRIVLLALVTV 484
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BLAST of EMLSAG00000000979 vs. L. salmonis peptides
Match: EMLSAP00000000979 (pep:novel supercontig:LSalAtl2s:LSalAtl2s116:1677984:1678607:-1 gene:EMLSAG00000000979 transcript:EMLSAT00000000979 description:"maker-LSalAtl2s116-augustus-gene-16.12")

HSP 1 Score: 185.652 bits (470), Expect = 7.253e-62
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 
Query:    1 MDSLALRKSFSDEELRNNLDDRFRVPSFSISLHEVSAKVIEAHEILHNKLVRKLRKAVTGHPDKKVSDSLHEESVRKKVKKIDAMSFSLGVLHVS 95
            MDSLALRKSFSDEELRNNLDDRFRVPSFSISLHEVSAKVIEAHEILHNKLVRKLRKAVTGHPDKKVSDSLHEESVRKKVKKIDAMSFSLGVLHVS
Sbjct:    1 MDSLALRKSFSDEELRNNLDDRFRVPSFSISLHEVSAKVIEAHEILHNKLVRKLRKAVTGHPDKKVSDSLHEESVRKKVKKIDAMSFSLGVLHVS 95
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BLAST of EMLSAG00000000979 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold5_size1054832-snap-gene-5.7 (protein:Tk04040 transcript:maker-scaffold5_size1054832-snap-gene-5.7-mRNA-1 annotation:"Protein of unknown function DUF2838")

HSP 1 Score: 47.7506 bits (112), Expect = 4.482e-8
Identity = 25/64 (39.06%), Postives = 40/64 (62.50%), Query Frame = 0 
Query:   32 LHEVSAKVIEAHEILHNKLVRKLRKAVTGHPDKKVSDSLHEESVRKKVKKIDAMSFSLGVLHVS 95
            L E   K+I A + +  K  +++R+ +TG P+K++ D L EE    +VK ID  SF+LGVL ++
Sbjct:  565 LKEARTKIINAGKQVPEKTKKQMREVITGDPNKRIRDHLKEEP---QVKMIDKFSFTLGVLVIT 625
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000979 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000979 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 11
Match NameE-valueIdentityDescription
gi|592798180|gb|GAXK01156388.1|8.513e+022.97TSA: Calanus finmarchicus comp387388_c0_seq1 trans... [more]

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BLAST of EMLSAG00000000979 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000009797.253e-62100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s116:16779... [more]
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BLAST of EMLSAG00000000979 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000979 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000979 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000979 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold5_size1054832-snap-gene-5.74.482e-839.06protein:Tk04040 transcript:maker-scaffold5_size105... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s116supercontigLSalAtl2s116:1677984..1678607 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s116-augustus-gene-16.12
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000979 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000979EMLSAT00000000979-696826Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s116:1677984..1678607-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000979-683745 ID=EMLSAG00000000979-683745|Name=EMLSAG00000000979|organism=Lepeophtheirus salmonis|type=gene|length=624bp|location=Sequence derived from alignment at LSalAtl2s116:1677984..1678607- (Lepeophtheirus salmonis)
ATGGATTCCCTCGCTCTTCGGAAGTCTTTTTCTGATGAAGAGCTAAGAAA
TAATCTCGATGACCGCTTCCGTGTACCATCTTTTTCCATTTCTCTACATG
AAGTATCTGCTAAGGTGATTGAAGCTCATGAGATCCTGCATAATAAATTA
GTGAGGAAGCTACGAAAAGCAGTGACAGGGCACCCAGATAAGAAAGTGAG
TGACTCTCTTCACGAAGAAAGTGTGAGGAAAAAAGTTAAGAAGATTGATG
CTATGAGTTTTTCACTGGGAGTAAGCTTATGTTTTTTTGTGGAGTTGGTA
TTTTTCTCGTATCCCAGATGGTTTCCAAGCCTTTATGTTCTACTCATTTC
TTCTTTGTTGGTTCTTAGGTATGTTCGTAGGTACATTTATAATTAAGTTT
TGAGCTTATTCATATTTAGTGGGGGTTTTTTTTACCAATTTATGTATGCG
TTTCTTAAAATAATGAAGTACACTCTGAAATTTTCCAGTTGTTATTTTAA
CAACTGCACAGAGTAACATTTTATAAGAATGTGACTACATAATATATTTT
GAAGGAAAATTAAATACTTTTTTCAATTAAAATAAGTATTTCTCTATTTT
TTTCAGGTTCTTCACGTATCGTAA
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