EMLSAG00000001000, EMLSAG00000001000-683766 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001000 vs. C. finmarchicus
Match: gi|592772984|gb|GAXK01181584.1| (TSA: Calanus finmarchicus comp129263_c10_seq7 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 9.882e-2 Identity = 20/54 (37.04%), Postives = 32/54 (59.26%), Query Frame = 0 Query: 28 LSDIRVEESK-FLIQELEEVKDIVKYEAFKAFSSEVAARGITLERTKSIIDVVK 80 LS R E ++ L+ E+ +V+ +K FK V ARG+++ TK+IID +K Sbjct: 73 LSARRTETARNMLVDEVMQVQKKIKALMFKYIQEGVGARGVSVLATKTIIDSIK 234
BLAST of EMLSAG00000001000 vs. C. finmarchicus
Match: gi|592772986|gb|GAXK01181582.1| (TSA: Calanus finmarchicus comp129263_c10_seq5 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 1.057e-1 Identity = 20/54 (37.04%), Postives = 32/54 (59.26%), Query Frame = 0 Query: 28 LSDIRVEESK-FLIQELEEVKDIVKYEAFKAFSSEVAARGITLERTKSIIDVVK 80 LS R E ++ L+ E+ +V+ +K FK V ARG+++ TK+IID +K Sbjct: 73 LSARRTETARNMLVDEVMQVQKKIKALMFKYIQEGVGARGVSVLATKTIIDSIK 234
BLAST of EMLSAG00000001000 vs. C. finmarchicus
Match: gi|592772988|gb|GAXK01181580.1| (TSA: Calanus finmarchicus comp129263_c10_seq3 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 1.336e-1 Identity = 34/124 (27.42%), Postives = 60/124 (48.39%), Query Frame = 0 Query: 28 LSDIRVEESK-FLIQELEEVKDIVKYEAFKAFSSEVAARGITLERTKSIIDVVKFFMEETIKEIDEIISNLNE-FQRNPDSFDADAENYVNSVIEMLPEIVPFVIDGYRDILLRLKQSEYTSNV 149 LS R E ++ L+ E+ +V+ +K FK V ARG+++ TK+IID +K +++ S++ E F P D + V +++E + E+V + D ++L Q Y V Sbjct: 73 LSARRTETARNMLVDEVMQVQKKIKALMFKYIQEGVGARGVSVLATKTIIDSIKSIWLSVNDDLESAKSSIQELFYLLP----LDTKEQVQAMVE-IAEVVQRIPDKTEELLQEATQEGYQQYV 429
BLAST of EMLSAG00000001000 vs. C. finmarchicus
Match: gi|592772996|gb|GAXK01181572.1| (TSA: Calanus finmarchicus comp129263_c5_seq6 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 6.504e-1 Identity = 17/34 (50.00%), Postives = 19/34 (55.88%), Query Frame = 0 Query: 46 VKDIVKYEAFKAFSSEVAARGITLERTKSIIDVV 79 VKD K FK V RG++L TKSIID V Sbjct: 258 VKDKTKILMFKYIEKGVGERGVSLRATKSIIDSV 359
BLAST of EMLSAG00000001000 vs. C. finmarchicus
Match: gi|592957096|gb|GAXK01001460.1| (TSA: Calanus finmarchicus comp3075746_c0_seq1 transcribed RNA sequence) HSP 1 Score: 29.6462 bits (65), Expect = 3.520e+0 Identity = 15/40 (37.50%), Postives = 27/40 (67.50%), Query Frame = 0 Query: 89 EIDEIISNLNEFQRNPDSFDADA----ENYVNSVIEMLPE 124 +++ ISNLNEFQRN + +A+ +N+ +S+ +M+ E Sbjct: 370 KMNSWISNLNEFQRNSKNENAEMLYILDNFNSSITKMIEE 489
BLAST of EMLSAG00000001000 vs. C. finmarchicus
Match: gi|592851774|gb|GAXK01105770.1| (TSA: Calanus finmarchicus comp185921_c0_seq1 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 8.244e+0 Identity = 18/74 (24.32%), Postives = 35/74 (47.30%), Query Frame = 0 Query: 58 FSSEVAARGITLERTKSIIDVVKFFMEETIKEIDEIISNLNEFQRNPDSFDADAENYVNSVIEMLPEIVPFVID 131 F S G +L T ++I ++ ++ K+ ++ + FQ NPD Y+N+++ P PF++D Sbjct: 4719 FESLFGVWGGSLVMTITLIKCLRSVWSDSTKQYFTLLLCILLFQYNPDG-------YLNNLVPSKPRTSPFLLD 4919
BLAST of EMLSAG00000001000 vs. L. salmonis peptides
Match: EMLSAP00000001000 (pep:novel supercontig:LSalAtl2s:LSalAtl2s116:264991:268048:-1 gene:EMLSAG00000001000 transcript:EMLSAT00000001000 description:"maker-LSalAtl2s116-augustus-gene-2.13") HSP 1 Score: 298.13 bits (762), Expect = 2.299e-104 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 Query: 1 MLSYWISFAIVLITALQSLVINCQPIKLSDIRVEESKFLIQELEEVKDIVKYEAFKAFSSEVAARGITLERTKSIIDVVKFFMEETIKEIDEIISNLNEFQRNPDSFDADAENYVNSVIEMLPEIVPFVIDGYRDILLRLKQSEYTSNVV 150 MLSYWISFAIVLITALQSLVINCQPIKLSDIRVEESKFLIQELEEVKDIVKYEAFKAFSSEVAARGITLERTKSIIDVVKFFMEETIKEIDEIISNLNEFQRNPDSFDADAENYVNSVIEMLPEIVPFVIDGYRDILLRLKQSEYTSNVV Sbjct: 1 MLSYWISFAIVLITALQSLVINCQPIKLSDIRVEESKFLIQELEEVKDIVKYEAFKAFSSEVAARGITLERTKSIIDVVKFFMEETIKEIDEIISNLNEFQRNPDSFDADAENYVNSVIEMLPEIVPFVIDGYRDILLRLKQSEYTSNVV 150 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001000 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001000 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 6
BLAST of EMLSAG00000001000 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000001000 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001000 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001000 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000001000 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s116:264991..268048- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001000-683766 ID=EMLSAG00000001000-683766|Name=EMLSAG00000001000|organism=Lepeophtheirus salmonis|type=gene|length=3058bp|location=Sequence derived from alignment at LSalAtl2s116:264991..268048- (Lepeophtheirus salmonis)back to top Add to Basket
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