EMLSAG00000001041, EMLSAG00000001041-683807 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001041
Unique NameEMLSAG00000001041-683807
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592819826|gb|GAXK01134742.1| (TSA: Calanus finmarchicus comp705746_c2_seq3 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.670e+0
Identity = 10/40 (25.00%), Postives = 20/40 (50.00%), Query Frame = 0 
Query:   54 YPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYY 93
            YPW+++V    N   P  +C G+++N  ++     C   +
Sbjct:    9 YPWMAMVVVLSNSFIPESVCGGSIINTKWIITARHCIQSF 128
[Close]
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592958278|gb|GAXK01000278.1| (TSA: Calanus finmarchicus comp1315790_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 2.398e+0
Identity = 22/70 (31.43%), Postives = 32/70 (45.71%), Query Frame = 0 
Query:   34 GAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQ-HYV-------ALDESCFDYYER 95
            G A DF  ++AD  TGL  V     + T    +   L  C+ +LVN  HY        + +E C +YY +
Sbjct:   57 GKAIDFSGAVADDETGLQCVIETAKIDTV---EKESLLSCTHSLVNACHYTYVTRYRPSREEECEEYYHK 257
[Close]
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592958279|gb|GAXK01000277.1| (TSA: Calanus finmarchicus comp1315790_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 2.401e+0
Identity = 22/70 (31.43%), Postives = 32/70 (45.71%), Query Frame = 0 
Query:   34 GAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQ-HYV-------ALDESCFDYYER 95
            G A DF  ++AD  TGL  V     + T    +   L  C+ +LVN  HY        + +E C +YY +
Sbjct:   57 GKAIDFSGAVADDETGLQCVIETAKIDTV---EKESLLSCTHSLVNACHYTYVTRYRPSREEECEEYYHK 257
[Close]
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592914920|gb|GAXK01043455.1| (TSA: Calanus finmarchicus comp50878_c4_seq4 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 6.425e+0
Identity = 25/83 (30.12%), Postives = 37/83 (44.58%), Query Frame = 0 
Query:   46 KPTGLTTVYPWLSLVTGPFNKNN-PLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSKI 127
            + TGL      L     P  K++  +  C G + N   V   E  F    +V  +FP   +N+    +K K D TL+EL +KI
Sbjct:   40 RLTGLDQKIRNLDFAQLPLLKDSVTIDFCPGLVYNDDSVREQERNFSTLGKVLQEFPSTQVNID---LKDK-DKTLVELVNKI 276
[Close]
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592760207|gb|GAXK01194206.1| (TSA: Calanus finmarchicus comp5662542_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 6.464e+0
Identity = 16/59 (27.12%), Postives = 29/59 (49.15%), Query Frame = 0 
Query:   41 SSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEVQ 99
            + I +    + T +PW++ ++   N N+P   C G+L+   +V     C   Y  +EVQ
Sbjct:  388 TRIVNGKDAVITEHPWMACLS---NLNSPQCDCGGSLITDQWVLTAAHC--QYSALEVQ 549
[Close]
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592901852|gb|GAXK01056523.1| (TSA: Calanus finmarchicus comp305953_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 8.186e+0
Identity = 13/45 (28.89%), Postives = 22/45 (48.89%), Query Frame = 0 
Query:   54 YPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEV 98
            +PW+ L+    ++   L  C G L+N+ YV     C +  + V V
Sbjct:  839 FPWVVLLGRKGSRGQSLWKCGGTLINRWYVLTAAHCKNSMDIVRV 973
[Close]
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592914921|gb|GAXK01043454.1| (TSA: Calanus finmarchicus comp50878_c4_seq3 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 8.609e+0
Identity = 24/83 (28.92%), Postives = 35/83 (42.17%), Query Frame = 0 
Query:   46 KPTGLTTVYPWLSLVTGPFNKNN-PLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSKI 127
            + TGL      L     P  K++  +  C G + N   V   E  F    +V  +FP   +N+  K      D TL+EL +KI
Sbjct:  432 RLTGLDQKIRNLDFAQLPLLKDSVTIDFCPGLVYNDDSVREQERNFSTLGKVLQEFPSTQVNIDLK----DKDKTLVELVNKI 668
[Close]
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592914925|gb|GAXK01043450.1| (TSA: Calanus finmarchicus comp50878_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 8.821e+0
Identity = 24/83 (28.92%), Postives = 35/83 (42.17%), Query Frame = 0 
Query:   46 KPTGLTTVYPWLSLVTGPFNKNN-PLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSKI 127
            + TGL      L     P  K++  +  C G + N   V   E  F    +V  +FP   +N+  K      D TL+EL +KI
Sbjct:  322 RLTGLDQKIRNLDFAQLPLLKDSVTIDFCPGLVYNDDSVREQERNFSTLGKVLQEFPSTQVNIDLK----DKDKTLVELVNKI 558
[Close]
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592914922|gb|GAXK01043453.1| (TSA: Calanus finmarchicus comp50878_c4_seq2 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 8.905e+0
Identity = 24/83 (28.92%), Postives = 35/83 (42.17%), Query Frame = 0 
Query:   46 KPTGLTTVYPWLSLVTGPFNKNN-PLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSKI 127
            + TGL      L     P  K++  +  C G + N   V   E  F    +V  +FP   +N+  K      D TL+EL +KI
Sbjct:  457 RLTGLDQKIRNLDFAQLPLLKDSVTIDFCPGLVYNDDSVREQERNFSTLGKVLQEFPSTQVNIDLK----DKDKTLVELVNKI 693
[Close]
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592914926|gb|GAXK01043449.1| (TSA: Calanus finmarchicus comp50878_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 9.554e+0
Identity = 24/83 (28.92%), Postives = 35/83 (42.17%), Query Frame = 0 
Query:   46 KPTGLTTVYPWLSLVTGPFNKNN-PLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSKI 127
            + TGL      L     P  K++  +  C G + N   V   E  F    +V  +FP   +N+  K      D TL+EL +KI
Sbjct:  322 RLTGLDQKIRNLDFAQLPLLKDSVTIDFCPGLVYNDDSVREQERNFSTLGKVLQEFPSTQVNIDLK----DKDKTLVELVNKI 558
[Close]
BLAST of EMLSAG00000001041 vs. L. salmonis peptides
Match: EMLSAP00000001041 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1172:1:524:-1 gene:EMLSAG00000001041 transcript:EMLSAT00000001041 description:"maker-LSalAtl2s1172-augustus-gene-0.29")

HSP 1 Score: 274.633 bits (701), Expect = 9.577e-96
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 
Query:    1 MLIIQPYSWNMFYMVLFVFFPLDLVASDCVCGQGAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSKINTTS 131
            MLIIQPYSWNMFYMVLFVFFPLDLVASDCVCGQGAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSKINTTS
Sbjct:    1 MLIIQPYSWNMFYMVLFVFFPLDLVASDCVCGQGAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSKINTTS 131
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001041 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 21
Match NameE-valueIdentityDescription
gi|592819826|gb|GAXK01134742.1|1.670e+025.00TSA: Calanus finmarchicus comp705746_c2_seq3 trans... [more]
gi|592958278|gb|GAXK01000278.1|2.398e+031.43TSA: Calanus finmarchicus comp1315790_c0_seq2 tran... [more]
gi|592958279|gb|GAXK01000277.1|2.401e+031.43TSA: Calanus finmarchicus comp1315790_c0_seq1 tran... [more]
gi|592914920|gb|GAXK01043455.1|6.425e+030.12TSA: Calanus finmarchicus comp50878_c4_seq4 transc... [more]
gi|592760207|gb|GAXK01194206.1|6.464e+027.12TSA: Calanus finmarchicus comp5662542_c0_seq1 tran... [more]
gi|592901852|gb|GAXK01056523.1|8.186e+028.89TSA: Calanus finmarchicus comp305953_c1_seq1 trans... [more]
gi|592914921|gb|GAXK01043454.1|8.609e+028.92TSA: Calanus finmarchicus comp50878_c4_seq3 transc... [more]
gi|592914925|gb|GAXK01043450.1|8.821e+028.92TSA: Calanus finmarchicus comp50878_c2_seq2 transc... [more]
gi|592914922|gb|GAXK01043453.1|8.905e+028.92TSA: Calanus finmarchicus comp50878_c4_seq2 transc... [more]
gi|592914926|gb|GAXK01043449.1|9.554e+028.92TSA: Calanus finmarchicus comp50878_c2_seq1 transc... [more]

Pages

back to top
BLAST of EMLSAG00000001041 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000010419.577e-96100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1172:1:52... [more]
back to top
BLAST of EMLSAG00000001041 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001041 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001041 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001041 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1172supercontigLSalAtl2s1172:1..524 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1172-augustus-gene-0.29
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001041 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001041EMLSAT00000001041-696888Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1172:1..524-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001041-683807 ID=EMLSAG00000001041-683807|Name=EMLSAG00000001041|organism=Lepeophtheirus salmonis|type=gene|length=524bp|location=Sequence derived from alignment at LSalAtl2s1172:1..524- (Lepeophtheirus salmonis)
ATGTTGATCATACAACCTTATTCATGGAACATGTTTTACATGGTTCTCTT
TGTATTCTTTCCTCTTGATTTAGTTGCGTCAGATTGTGGTAAGTCGAAAC
ATTACTCATTTTCCAGATTTTCTTATGAGTCCAAATTCTAAACGTGAACA
TATTTTTATTTAAAAGTCTGTGGTCAAGGAGCAGCCCCGGACTTCATGTC
ATCAATAGCTGACAAGCCAACTGGATTAACTACTGTGTATCCTTGGTTGT
CCTTGGTTACTGGTCCATTTAATAAGAATAATCCTCTTGGTATGTGCTCA
GGAGCTCTGGTGAATCAACATTATGTGGCACTGGATGAGTCCTGTTTCGA
CTACTATGAAAGAGTTGAAGTAAGAAATATGATTGATATCAACCTTCAAA
AATCTTTTTTATATTCCTCCAGGTTCAATTTCCATTTGAAAATATAAATG
TGAGTGGAAAAGTAATAAAGACGAAGCATGATTATACCTTAATTGAATTA
GATTCAAAAATAAATACAACATCA
back to top
Add to Basket