EMLSAG00000001041, EMLSAG00000001041-683807 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001041
Unique NameEMLSAG00000001041-683807
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592914923|gb|GAXK01043452.1| (TSA: Calanus finmarchicus comp50878_c4_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 9.682e+0
Identity = 24/83 (28.92%), Postives = 35/83 (42.17%), Query Frame = 0 
Query:   46 KPTGLTTVYPWLSLVTGPFNKNN-PLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSKI 127
            + TGL      L     P  K++  +  C G + N   V   E  F    +V  +FP   +N+  K      D TL+EL +KI
Sbjct:  502 RLTGLDQKIRNLDFAQLPLLKDSVTIDFCPGLVYNDDSVREQERNFSTLGKVLQEFPSTQVNIDLK----DKDKTLVELVNKI 738
[Close]
BLAST of EMLSAG00000001041 vs. L. salmonis peptides
Match: EMLSAP00000001041 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1172:1:524:-1 gene:EMLSAG00000001041 transcript:EMLSAT00000001041 description:"maker-LSalAtl2s1172-augustus-gene-0.29")

HSP 1 Score: 274.633 bits (701), Expect = 9.577e-96
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 
Query:    1 MLIIQPYSWNMFYMVLFVFFPLDLVASDCVCGQGAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSKINTTS 131
            MLIIQPYSWNMFYMVLFVFFPLDLVASDCVCGQGAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSKINTTS
Sbjct:    1 MLIIQPYSWNMFYMVLFVFFPLDLVASDCVCGQGAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSKINTTS 131
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001041 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 21
Match NameE-valueIdentityDescription
gi|592914923|gb|GAXK01043452.1|9.682e+028.92TSA: Calanus finmarchicus comp50878_c4_seq1 transc... [more]

Pages

back to top
BLAST of EMLSAG00000001041 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000010419.577e-96100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1172:1:52... [more]
back to top
BLAST of EMLSAG00000001041 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001041 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001041 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001041 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1172supercontigLSalAtl2s1172:1..524 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1172-augustus-gene-0.29
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001041 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001041EMLSAT00000001041-696888Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1172:1..524-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001041-683807 ID=EMLSAG00000001041-683807|Name=EMLSAG00000001041|organism=Lepeophtheirus salmonis|type=gene|length=524bp|location=Sequence derived from alignment at LSalAtl2s1172:1..524- (Lepeophtheirus salmonis)
ATGTTGATCATACAACCTTATTCATGGAACATGTTTTACATGGTTCTCTT
TGTATTCTTTCCTCTTGATTTAGTTGCGTCAGATTGTGGTAAGTCGAAAC
ATTACTCATTTTCCAGATTTTCTTATGAGTCCAAATTCTAAACGTGAACA
TATTTTTATTTAAAAGTCTGTGGTCAAGGAGCAGCCCCGGACTTCATGTC
ATCAATAGCTGACAAGCCAACTGGATTAACTACTGTGTATCCTTGGTTGT
CCTTGGTTACTGGTCCATTTAATAAGAATAATCCTCTTGGTATGTGCTCA
GGAGCTCTGGTGAATCAACATTATGTGGCACTGGATGAGTCCTGTTTCGA
CTACTATGAAAGAGTTGAAGTAAGAAATATGATTGATATCAACCTTCAAA
AATCTTTTTTATATTCCTCCAGGTTCAATTTCCATTTGAAAATATAAATG
TGAGTGGAAAAGTAATAAAGACGAAGCATGATTATACCTTAATTGAATTA
GATTCAAAAATAAATACAACATCA
back to top
Add to Basket