EMLSAG00000001110, EMLSAG00000001110-683876 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001110
Unique NameEMLSAG00000001110-683876
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001110 vs. C. finmarchicus
Match: gi|592859589|gb|GAXK01097973.1| (TSA: Calanus finmarchicus comp39770_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.5874 bits (96), Expect = 1.845e-3
Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 0 
Query:  201 RPAIQIYRPGMGKFSSQTIKSD 222
            +P +QIYRPGMGKFSS+++K D
Sbjct:  788 KPDMQIYRPGMGKFSSKSLKKD 853
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BLAST of EMLSAG00000001110 vs. L. salmonis peptides
Match: EMLSAP00000001110 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1186:115596:119698:1 gene:EMLSAG00000001110 transcript:EMLSAT00000001110 description:"maker-LSalAtl2s1186-snap-gene-1.36")

HSP 1 Score: 534.258 bits (1375), Expect = 0.000e+0
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0 
Query:    1 MGDAGHKHEKGWRGKNDSKESNEPGEEPVKKKRNDDERRSRRNREDKKHASDSKDDSSRKNYTEDSGHGERTRRHNRDENKNGSESKEEPSRKKNTDDESDRSWRQSREDKKESSEGKEEVVSSKRYSDRRHDDRGRWGERSRNKYKDNDAGYSQPITVLQKDDFPAINSGSKDNENDSGGNTKSKNSKRSNTERIKNKERPAIQIYRPGMGKFSSQTIKSDSAKEDEGGKCDEPQDSGNKSSKSFKKYSHKQYYAGGGARFRRTERKESND 272
            MGDAGHKHEKGWRGKNDSKESNEPGEEPVKKKRNDDERRSRRNREDKKHASDSKDDSSRKNYTEDSGHGERTRRHNRDENKNGSESKEEPSRKKNTDDESDRSWRQSREDKKESSEGKEEVVSSKRYSDRRHDDRGRWGERSRNKYKDNDAGYSQPITVLQKDDFPAINSGSKDNENDSGGNTKSKNSKRSNTERIKNKERPAIQIYRPGMGKFSSQTIKSDSAKEDEGGKCDEPQDSGNKSSKSFKKYSHKQYYAGGGARFRRTERKESND
Sbjct:    1 MGDAGHKHEKGWRGKNDSKESNEPGEEPVKKKRNDDERRSRRNREDKKHASDSKDDSSRKNYTEDSGHGERTRRHNRDENKNGSESKEEPSRKKNTDDESDRSWRQSREDKKESSEGKEEVVSSKRYSDRRHDDRGRWGERSRNKYKDNDAGYSQPITVLQKDDFPAINSGSKDNENDSGGNTKSKNSKRSNTERIKNKERPAIQIYRPGMGKFSSQTIKSDSAKEDEGGKCDEPQDSGNKSSKSFKKYSHKQYYAGGGARFRRTERKESND 272
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BLAST of EMLSAG00000001110 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold611_size124749-processed-gene-0.0 (protein:Tk11826 transcript:snap_masked-scaffold611_size124749-processed-gene-0.0-mRNA-1 annotation:"hypothetical protein DAPPUDRAFT_216440")

HSP 1 Score: 53.9138 bits (128), Expect = 1.455e-8
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0 
Query:  194 ERIKNKERPAIQIYRPGMGKFSSQTIKSDSAKEDEGGK 231
            ER+KNKERP +QIYRPGMGKFSS+TI+       EGGK
Sbjct:  387 ERLKNKERPEMQIYRPGMGKFSSKTIR-------EGGK 417
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001110 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001110 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592859589|gb|GAXK01097973.1|1.845e-368.18TSA: Calanus finmarchicus comp39770_c0_seq1 transc... [more]
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BLAST of EMLSAG00000001110 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000011100.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1186:1155... [more]
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BLAST of EMLSAG00000001110 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001110 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001110 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001110 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
snap_masked-scaffold611_size124749-processed-gene-0.01.455e-868.42protein:Tk11826 transcript:snap_masked-scaffold611... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1186supercontigLSalAtl2s1186:115596..119698 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1186-snap-gene-1.36
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001110 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001110EMLSAT00000001110-696957Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1186:115596..119698+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001110-683876 ID=EMLSAG00000001110-683876|Name=EMLSAG00000001110|organism=Lepeophtheirus salmonis|type=gene|length=4103bp|location=Sequence derived from alignment at LSalAtl2s1186:115596..119698+ (Lepeophtheirus salmonis)
CCTGCGCCAAGTTGGCAAATTTGTTCATTTTATAAATCATGAGTGTGGGT
TATTTTATCTATTAATTTATAATCTCGCTTTGATGATATGTAAAATAAAT
TTAATGAATAATTTGGTAACTTGACCCTATCTTCCCTAATTCCAAATCTA
GTAGGTGAAGATGATGAATTTGGCCGCAAGTGCCTCAATGACGTCATATT
TCATTTCTTTGAGTTACAAATATTGGCTAATAATTGTAATAACTAAATAT
CATTACAAATCATTATTTTAATCATTAATTATTATCAATGACGAATTCCA
ACAACCCTGAACCTAAGGAGGACGGACCAAGAACCAGATCCTCTAAAAAA
CCATTTCCAACAAAAGTAATTCTCTTAAGATCTCCATTTTTTATGTGTGT
CTTAATGTTTATATAATTAATATTAATTATTAGATCGTATGTCGACGATT
GCCTCCAACGCTGGACAAAACCAACTTTTTGGATCTCGTAAGTCCTTTAC
CCGAGTACAACTACTTCCGTTTCGAAAAGCCAAACAATGAGGATGGGAAT
ATTTCCTTTTGTCGGGCGTATTTCAACTTTTTGAAGCAAGAGGATGTGTT
TAATTTTACGGAAAGGTTTGATGGATATGTATTTCTGGATAAGCAAGGTG
AGGAATGTCTCAAAGTCCTCCCTTATTTAAGACTCTAATAAATGATCATC
CACAGGGAATGAATATCCAGCAATTGTGGAATTTGCTCCTTATCAAAAAG
TGTCCAAAGTGAAAACAGATCAACGTCCAGACGCAAAGTGTAATACCCTT
GACACGGATAAGGAGTATTTGGCCTTTGTTGAGGCATATGAAAACAAGGA
AAATGAGAATATTGCGCATCCTACACCTGAACAATACTTGGAAGAAATTG
AAAATCGTGAAAAAATTAGTGAGTCACTATTGATGGATGATTTTAGTCAT
ATAGAGCGTATTCTTGTCAGCATTGTTGATGTCCACCAAATTGTATAACA
ATGTAACCCATTTTTTCATTAATATTAAGGAAAATAGTGAACCATTGGAT
GTTCAAATGGGAGCATCAAATAAAAGGCCTAAACCCCTTACTGTATATCA
AAAATCTATCCCTCTGGTGCATAGTTTATATATATTAAAAATAATTGATT
ACATCGTTATACAATCTTATTTCCGTATTTTAATAACAATTAATTACTAC
AGTGAAAAAGATTAGATATTTTTCTCTAATAATCCTACTTTTTTCGTTCC
TAATCGATCAAAAAATAATAATAATTTTACAAACTTGGAATTAATTTTTA
GGATTATTAATTAAAATTTCAATGTTTATCGTGTGCATCAAGTAGTATTC
AGTGCGGATGTTAAGTCTTTTTTATTCTTAAAACCATTTGATGAAGTTTC
ATCACAATGTATAAAAATTTTTAGCTAGCATTTTATAAGCCATTTTGATC
ATTATTCAACAACTAGGTATAATTAATAATTCATTAGAACTTACATTATA
GTTGTTCGGATAAATTGGGTAATGTGTTAATTATTTATAACCTTTGATTT
TGTCACTTATTTTATTATTCATTTATTAATTTAGAAGAAACAAGCACTCC
ACTTTTGGAATTCTTAGCTCTAAAGAAAATTAATAAAAAGGGGAAATTTA
GGGAAAAGAAATCTCGTCGTCAAAGAATGGGAGATGCTGGACATAAGCAT
GAAAAGGGATGGCGAGGCAAAAATGATTCAAAGGAATCCAATGAGCCAGG
AGAAGAACCCGTGAAAAAGAAGCGTAATGATGATGAAAGAAGGAGTCGAC
GAAATAGAGAAGATAAAAAACATGCTTCAGATTCCAAAGATGACTCATCA
AGAAAAAATTACACGGAGGACTCTGGACATGGTGAAAGAACTAGACGCCA
TAATAGAGATGAGAATAAGAATGGATCAGAGTCGAAGGAAGAGCCTTCTA
GAAAAAAAAATACTGATGATGAATCAGATAGAAGTTGGCGTCAGTCTAGA
GAGGATAAAAAAGAATCCTCTGAAGGAAAGGAAGAAGTAGTGTCATCTAA
GCGATACTCAGATCGACGGCATGACGATAGAGGTCGTTGGGGTGAGAGAT
CAAGGAACAAGTACAAGGATAATGACGCAGGTTTGGTATTACTGCTCAAT
TTAGGTTTTTGATTGAATGGAATTCGTATTTGATTTCTTAGGTTACTCTC
AACCCATAACCGTACTTCAAAAAGATGATTTCCCAGCCATAAATTCAGGA
TCCAAAGATAATGAGAACGATAGTGGTGGAAATACTAAGTCCAAGAATTC
AAAAAGAAGTAACACAGAGAGAATAAAAAACAAAGAGCGACCTGCAATAC
AAATTTATAGACCCGGTATGGGGAAATTCAGTTCTCAAACCATCAAGTCA
GACTCTGCGAAAGAAGATGAAGGTGGGAAATGTGACGAGCCCCAGGATTC
AGGGAATAAGAGCTCAAAGTCTTTTAAGAAATATTCTCATAAACAATATT
ACGCAGGTGGTGGGGCACGTTTTCGTCGTACCGAGAGAAAAGAGAGCAAT
GATTAACAACAATGGTCTTATTTTTAAAGATCTGGTTTTCGAAGTTTGTA
TCTTTTCTTAATGTGTGTCTCATTTATAAGTAGAGGAAAATGATTTGACG
TGTTACGTTATGATTGATACGTTGATATTTTTCTCGGGTCTGGAGGATTC
TTGTAAATTAGGAGTTTAGTTTGCRTCAAAAGAAATCATTTTAACTGTCT
TAGGTTAAACATGCCTTACTAATTTGATGTACGACATTTCCAAGAGGATC
TTTTAACTTGTATTACAGTGCGTCAACCTTATATATATATTTTGTAAATA
TACCCAACACATGTTTGTATTACATCATATATCCAAAATATTTAATAAAT
GTATTAAAAATGATAATCATTTGATGAATTTGTATTTTGTTTCTATAAAT
AAATATTATGTGTCACTTCTCCAAAGCTTAATGGTTTTGTCATTTTCGAG
TGCAGCGGACGCTATAATATTCTCAGTTGGGTGACAAGCGGTACTTAAAA
CGACATCAGTGTGTCCTTGCAATTTTTGGACAATTTCTTTAGTTTGTAAA
TTCCAAATATAAACCATATTGTCCTCTGAGCCTGATACAATCCACTTTCC
ACCCGTGACACTAAAATTTGCGAAAACACAATACTTTTCATTTCGATGCC
CAGAATAGGTTTTAAGACATTTTCCTTTGGAATATTCCCACAATTTAAGG
GTATTGTCCAATGTTGCTGCTAATATATATTTTCCATTGGGACTGAATTT
TACAAAAGAAACAGGGGGATTGTCGTTGTCGATCAGAGTCTTGAGACATT
GACCTGATGCTGTATCCCAAATTCTGCAMAAGCCATCATATGAAGAGGAA
ACAATGAGAGATCCGTCTCGATTAAAATGAACTGCAGAGACCGGGTCTGA
GTGAGCTGGAAGTGTTTTCAAGCATTTACCGGTACGCACATCCCAAATAC
GAACACTCTCGTCGAAGGAGCCAGAGACCACCAAATTACTTTGGGGATTA
AAGTTACAACAAAATACATAATTGGAGTGACCTGAAAACAAACAAACAAA
CGTGAATGAATACACTGAGATAGTGAATTGCTTTTTCTCTCTCAATTTGG
GATTCGAACCTTTTAAGGTCTTGAGGCATTTCCCTGAGGAAAGTTCCCAG
ATTTTTAATGTTTTATCATCAGATGCAGACACAAGGAGTCGAGAGTCAGA
GCTCCAAGCTACGTCCGAAATTCCCAGTTTATGACCGGATATTGTCTTTT
CAAATTTTCCGTCATAGGAGCCCCAAACTTTGATCAATTTATCCGCCGAA
GAAGAGGCCAACCATTCGCCATTCGGACTGAATTTCACGGCTGAGACACC
CTTGGTGTGACCTGCCAAAGTAAACTTTAAACTGTAGTTGGGTCGTAGTC
CGGATTTGCTGCTGCCTCCTTGAGAAGAAGAAGAGTGATCCATTTCCTTT
CCAAAGGCCTTCACTACTCACACTTATCTTAATTAATAATTACTCCAATT
TTCCGCCACTCAAAATAACACGATTTTCATATTATAACGAAAGAAAAAGA
AGA
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