EMLSAG00000001154, EMLSAG00000001154-683920 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001154
Unique NameEMLSAG00000001154-683920
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001154 vs. C. finmarchicus
Match: gi|592884310|gb|GAXK01074065.1| (TSA: Calanus finmarchicus comp122269_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 8.779e+0
Identity = 15/55 (27.27%), Postives = 28/55 (50.91%), Query Frame = 0 
Query:    5 GYINVSTDR--RPFLWFFFLRGHSLRLTLRKLLSQVHTESFKENIENLVKEKLSF 57
             Y++    R   PFL+FF L  H L +    ++  +H + F +N  +++   L+F
Sbjct: 2760 NYLHFQFPRLCPPFLFFFLLYSHFLHVLFSLIILFLHIQLFYQN--HVLSPPLTF 2918
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BLAST of EMLSAG00000001154 vs. C. finmarchicus
Match: gi|592884311|gb|GAXK01074064.1| (TSA: Calanus finmarchicus comp122269_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 8.779e+0
Identity = 15/55 (27.27%), Postives = 28/55 (50.91%), Query Frame = 0 
Query:    5 GYINVSTDR--RPFLWFFFLRGHSLRLTLRKLLSQVHTESFKENIENLVKEKLSF 57
             Y++    R   PFL+FF L  H L +    ++  +H + F +N  +++   L+F
Sbjct: 2764 NYLHFQFPRLCPPFLFFFLLYSHFLHVLFSLIILFLHIQLFYQN--HVLSPPLTF 2922
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BLAST of EMLSAG00000001154 vs. C. finmarchicus
Match: gi|592884312|gb|GAXK01074063.1| (TSA: Calanus finmarchicus comp122269_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 8.779e+0
Identity = 15/55 (27.27%), Postives = 28/55 (50.91%), Query Frame = 0 
Query:    5 GYINVSTDR--RPFLWFFFLRGHSLRLTLRKLLSQVHTESFKENIENLVKEKLSF 57
             Y++    R   PFL+FF L  H L +    ++  +H + F +N  +++   L+F
Sbjct: 2776 NYLHFQFPRLCPPFLFFFLLYSHFLHVLFSLIILFLHIQLFYQN--HVLSPPLTF 2934
[Close]
BLAST of EMLSAG00000001154 vs. C. finmarchicus
Match: gi|592884313|gb|GAXK01074062.1| (TSA: Calanus finmarchicus comp122269_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 8.781e+0
Identity = 15/55 (27.27%), Postives = 28/55 (50.91%), Query Frame = 0 
Query:    5 GYINVSTDR--RPFLWFFFLRGHSLRLTLRKLLSQVHTESFKENIENLVKEKLSF 57
             Y++    R   PFL+FF L  H L +    ++  +H + F +N  +++   L+F
Sbjct: 2884 NYLHFQFPRLCPPFLFFFLLYSHFLHVLFSLIILFLHIQLFYQN--HVLSPPLTF 3042
[Close]
BLAST of EMLSAG00000001154 vs. C. finmarchicus
Match: gi|592884314|gb|GAXK01074061.1| (TSA: Calanus finmarchicus comp122269_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 8.781e+0
Identity = 15/55 (27.27%), Postives = 28/55 (50.91%), Query Frame = 0 
Query:    5 GYINVSTDR--RPFLWFFFLRGHSLRLTLRKLLSQVHTESFKENIENLVKEKLSF 57
             Y++    R   PFL+FF L  H L +    ++  +H + F +N  +++   L+F
Sbjct: 2896 NYLHFQFPRLCPPFLFFFLLYSHFLHVLFSLIILFLHIQLFYQN--HVLSPPLTF 3054
[Close]
BLAST of EMLSAG00000001154 vs. C. finmarchicus
Match: gi|592884315|gb|GAXK01074060.1| (TSA: Calanus finmarchicus comp122269_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 8.781e+0
Identity = 15/55 (27.27%), Postives = 28/55 (50.91%), Query Frame = 0 
Query:    5 GYINVSTDR--RPFLWFFFLRGHSLRLTLRKLLSQVHTESFKENIENLVKEKLSF 57
             Y++    R   PFL+FF L  H L +    ++  +H + F +N  +++   L+F
Sbjct: 2923 NYLHFQFPRLCPPFLFFFLLYSHFLHVLFSLIILFLHIQLFYQN--HVLSPPLTF 3081
[Close]
BLAST of EMLSAG00000001154 vs. L. salmonis peptides
Match: EMLSAP00000001154 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1190:96680:97042:-1 gene:EMLSAG00000001154 transcript:EMLSAT00000001154 description:"maker-LSalAtl2s1190-augustus-gene-0.27")

HSP 1 Score: 147.902 bits (372), Expect = 1.067e-47
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 
Query:    1 MKKKGYINVSTDRRPFLWFFFLRGHSLRLTLRKLLSQVHTESFKENIENLVKEKLSFAASRYSKFEKVFADC 72
            MKKKGYINVSTDRRPFLWFFFLRGHSLRLTLRKLLSQVHTESFKENIENLVKEKLSFAASRYSKFEKVFADC
Sbjct:    1 MKKKGYINVSTDRRPFLWFFFLRGHSLRLTLRKLLSQVHTESFKENIENLVKEKLSFAASRYSKFEKVFADC 72
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001154 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001154 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 16
Match NameE-valueIdentityDescription
gi|592884310|gb|GAXK01074065.1|8.779e+027.27TSA: Calanus finmarchicus comp122269_c0_seq6 trans... [more]
gi|592884311|gb|GAXK01074064.1|8.779e+027.27TSA: Calanus finmarchicus comp122269_c0_seq5 trans... [more]
gi|592884312|gb|GAXK01074063.1|8.779e+027.27TSA: Calanus finmarchicus comp122269_c0_seq4 trans... [more]
gi|592884313|gb|GAXK01074062.1|8.781e+027.27TSA: Calanus finmarchicus comp122269_c0_seq3 trans... [more]
gi|592884314|gb|GAXK01074061.1|8.781e+027.27TSA: Calanus finmarchicus comp122269_c0_seq2 trans... [more]
gi|592884315|gb|GAXK01074060.1|8.781e+027.27TSA: Calanus finmarchicus comp122269_c0_seq1 trans... [more]

Pages

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BLAST of EMLSAG00000001154 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000011541.067e-47100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1190:9668... [more]
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BLAST of EMLSAG00000001154 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001154 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001154 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001154 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1190supercontigLSalAtl2s1190:96680..97042 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1190-augustus-gene-0.27
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001154 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001154EMLSAT00000001154-697001Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1190:96680..97042-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001154-683920 ID=EMLSAG00000001154-683920|Name=EMLSAG00000001154|organism=Lepeophtheirus salmonis|type=gene|length=363bp|location=Sequence derived from alignment at LSalAtl2s1190:96680..97042- (Lepeophtheirus salmonis)
ATGGTCACCAACCTTGGTCCTAAATCCACTCTATAACTAGAACCAAAGTT
CAACTTAGTTTGGACTTTTTTCTGCTCAATTTCGGTAGATCTCATTTGAA
TTTCGAATAATCGTAAATTTAAATTCAATATTCCTTTTTTTATTTAGAAA
AAAAAAGGATATATCAATGTCTCCACAGATCGAAGGCCCTTCTTATGGTT
TTTCTTCTTGCGAGGACACTCTCTTCGATTAACATTGAGGAAACTCTTGT
CTCAGGTCCACACTGAGAGTTTTAAGGAGAATATTGAGAATCTCGTCAAA
GAGAAGTTATCCTTTGCCGCATCTCGTTACTCCAAGTTTGAGAAGGTGTT
CGCGGATTGCTAA
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