EMLSAG00000001197, EMLSAG00000001197-683963 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001197 vs. C. finmarchicus
Match: gi|592916192|gb|GAXK01042183.1| (TSA: Calanus finmarchicus comp1004340_c0_seq1 transcribed RNA sequence) HSP 1 Score: 29.6462 bits (65), Expect = 6.628e-1 Identity = 16/43 (37.21%), Postives = 22/43 (51.16%), Query Frame = 0 Query: 20 LEHGLNYWRKN-----LIFHIRIIRDTAHKDGLSTTSSPTIKS 57 + HG NYWR N L+ H ++ D H+D L+ S T K Sbjct: 1058 VHHGWNYWRGNDIIILLLGHCVLVLDEVHEDKLTKDRSDTKKG 1186
BLAST of EMLSAG00000001197 vs. C. finmarchicus
Match: gi|592777245|gb|GAXK01177323.1| (TSA: Calanus finmarchicus comp1414806_c0_seq1 transcribed RNA sequence) HSP 1 Score: 26.9498 bits (58), Expect = 4.283e+0 Identity = 12/28 (42.86%), Postives = 14/28 (50.00%), Query Frame = 0 Query: 5 LADSKCESLPCWTWGLEHGLNYWRKNLI 32 L SKC LP W +HG YW K + Sbjct: 500 LFTSKCHHLPHMPWNHDHGHFYWWKGVF 583
BLAST of EMLSAG00000001197 vs. C. finmarchicus
Match: gi|592779370|gb|GAXK01175198.1| (TSA: Calanus finmarchicus comp2923_c0_seq1 transcribed RNA sequence) HSP 1 Score: 26.5646 bits (57), Expect = 6.404e+0 Identity = 8/11 (72.73%), Postives = 8/11 (72.73%), Query Frame = 0 Query: 12 SLPCWTWGLEH 22 S PCWTWG H Sbjct: 466 SRPCWTWGSHH 498
BLAST of EMLSAG00000001197 vs. C. finmarchicus
Match: gi|592796406|gb|GAXK01158162.1| (TSA: Calanus finmarchicus comp66904_c0_seq2 transcribed RNA sequence) HSP 1 Score: 26.1794 bits (56), Expect = 7.947e+0 Identity = 10/28 (35.71%), Postives = 14/28 (50.00%), Query Frame = 0 Query: 5 LADSKCESLPCWTWGLEHGLNYWRKNLI 32 L S C +LPCW L G+ +W + Sbjct: 2885 LVLSPCPTLPCWV*PLTPGMGWWLGTAV 2968
BLAST of EMLSAG00000001197 vs. C. finmarchicus
Match: gi|592796407|gb|GAXK01158161.1| (TSA: Calanus finmarchicus comp66904_c0_seq1 transcribed RNA sequence) HSP 1 Score: 26.1794 bits (56), Expect = 7.952e+0 Identity = 10/28 (35.71%), Postives = 14/28 (50.00%), Query Frame = 0 Query: 5 LADSKCESLPCWTWGLEHGLNYWRKNLI 32 L S C +LPCW L G+ +W + Sbjct: 2933 LVLSPCPTLPCWV*PLTPGMGWWLGTAV 3016
BLAST of EMLSAG00000001197 vs. L. salmonis peptides
Match: EMLSAP00000001197 (pep:novel supercontig:LSalAtl2s:LSalAtl2s119:497691:500108:-1 gene:EMLSAG00000001197 transcript:EMLSAT00000001197 description:"maker-LSalAtl2s119-snap-gene-5.6") HSP 1 Score: 124.02 bits (310), Expect = 8.879e-39 Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 Query: 1 MLAPLADSKCESLPCWTWGLEHGLNYWRKNLIFHIRIIRDTAHKDGLSTTSSPTIKSVL 59 MLAPLADSKCESLPCWTWGLEHGLNYWRKNLIFHIRIIRDTAHKDGLSTTSSPTIKSVL Sbjct: 1 MLAPLADSKCESLPCWTWGLEHGLNYWRKNLIFHIRIIRDTAHKDGLSTTSSPTIKSVL 59 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001197 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001197 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 5
BLAST of EMLSAG00000001197 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000001197 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001197 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001197 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000001197 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s119:497691..500108- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001197-683963 ID=EMLSAG00000001197-683963|Name=EMLSAG00000001197|organism=Lepeophtheirus salmonis|type=gene|length=2418bp|location=Sequence derived from alignment at LSalAtl2s119:497691..500108- (Lepeophtheirus salmonis)back to top Add to Basket
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