EMLSAG00000001200, EMLSAG00000001200-683966 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592931238|gb|GAXK01027315.1| (TSA: Calanus finmarchicus comp1338286_c0_seq3 transcribed RNA sequence) HSP 1 Score: 59.6918 bits (143), Expect = 5.047e-11 Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 0 Query: 17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 AD+ YN A+INTNVIV G +VWLSHG++KSSC+ISVE Sbjct: 806 ADAQYNTAVINTNVIVSYTGEVVWLSHGMFKSSCDISVE 922
BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592931239|gb|GAXK01027314.1| (TSA: Calanus finmarchicus comp1338286_c0_seq2 transcribed RNA sequence) HSP 1 Score: 59.6918 bits (143), Expect = 6.543e-11 Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 0 Query: 17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 AD+ YN A+INTNVIV G +VWLSHG++KSSC+ISVE Sbjct: 1407 ADAQYNTAVINTNVIVSYTGEVVWLSHGMFKSSCDISVE 1523
BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592931240|gb|GAXK01027313.1| (TSA: Calanus finmarchicus comp1338286_c0_seq1 transcribed RNA sequence) HSP 1 Score: 59.6918 bits (143), Expect = 6.620e-11 Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 0 Query: 17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 AD+ YN A+INTNVIV G +VWLSHG++KSSC+ISVE Sbjct: 1451 ADAQYNTAVINTNVIVSYTGEVVWLSHGMFKSSCDISVE 1567
BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592880853|gb|GAXK01077048.1| (TSA: Calanus finmarchicus comp2898086_c0_seq1 transcribed RNA sequence) HSP 1 Score: 48.521 bits (114), Expect = 3.679e-7 Identity = 21/40 (52.50%), Postives = 28/40 (70.00%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD YN+ + +TN IV DG + WLS I+KSSC I+VE Sbjct: 510 NADRQYNSGVTSTNAIVTADGNVTWLSSAIFKSSCAINVE 629
BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592880515|gb|GAXK01077386.1| (TSA: Calanus finmarchicus comp846495_c0_seq2 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 1.018e-2 Identity = 16/47 (34.04%), Postives = 26/47 (55.32%), Query Frame = 0 Query: 17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVESTILNGHL 63 AD ++ TNV+V NDG +++ GI+KS+C I + + L Sbjct: 116 ADEKFDGTY-QTNVVVSNDGSCLYVPPGIFKSTCKIDITWFPFDDQL 253
BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592835445|gb|GAXK01122099.1| (TSA: Calanus finmarchicus comp106759_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 1.154e-2 Identity = 16/39 (41.03%), Postives = 24/39 (61.54%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISV 54 +AD NY +NV++ DG ++W+ IY+SSC I V Sbjct: 1895 NADGNYE-VRYKSNVLIYPDGEVLWIPPAIYQSSCTIDV 2008
BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592930925|gb|GAXK01027628.1| (TSA: Calanus finmarchicus comp3431390_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 2.642e-2 Identity = 20/46 (43.48%), Postives = 26/46 (56.52%), Query Frame = 0 Query: 10 LLCPPKHADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +LC AD +Y ++ T IV + G I+W IYKSSC I VE Sbjct: 538 ILCVFLSADGSYEVKLM-TKAIVYHTGDILWQPPAIYKSSCVIDVE 672
BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592900992|gb|GAXK01057383.1| (TSA: Calanus finmarchicus comp4318389_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 3.266e-2 Identity = 17/46 (36.96%), Postives = 26/46 (56.52%), Query Frame = 0 Query: 17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVESTILNGH 62 A +N +N + NT + V DG + WL+ G+Y S C I V+ L+ Sbjct: 439 AGTNRDNEL-NTYIQVSYDGNVTWLTQGMYVSKCEIDVKYYPLDAQ 573
BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592880516|gb|GAXK01077385.1| (TSA: Calanus finmarchicus comp846495_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 4.813e-2 Identity = 15/38 (39.47%), Postives = 24/38 (63.16%), Query Frame = 0 Query: 17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISV 54 AD ++ TNV+V NDG +++ GI+KS+C I + Sbjct: 1045 ADEKFDGTY-QTNVVVSNDGSCLYVPPGIFKSTCKIDI 1155
BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592816752|gb|GAXK01137816.1| (TSA: Calanus finmarchicus comp1531236_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 6.244e-2 Identity = 16/38 (42.11%), Postives = 25/38 (65.79%), Query Frame = 0 Query: 17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISV 54 A+ N++ A TN+IV +DG I + GI+KS+C I + Sbjct: 1017 ANENFD-ATFPTNIIVNHDGVISQIPPGIFKSTCKIDI 1127
BLAST of EMLSAG00000001200 vs. L. salmonis peptides
Match: EMLSAP00000001200 (pep:novel supercontig:LSalAtl2s:LSalAtl2s119:21583:25034:-1 gene:EMLSAG00000001200 transcript:EMLSAT00000001200 description:"snap-LSalAtl2s119-processed-gene-0.19") HSP 1 Score: 132.109 bits (331), Expect = 9.546e-42 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 Query: 1 MNFGYFKCHLLCPPKHADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVESTILNGHLH 64 MNFGYFKCHLLCPPKHADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVESTILNGHLH Sbjct: 1 MNFGYFKCHLLCPPKHADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVESTILNGHLH 64
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: XP_625040.2 (PREDICTED: neuronal acetylcholine receptor subunit alpha-10 [Apis mellifera]) HSP 1 Score: 60.8474 bits (146), Expect = 5.267e-12 Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD Y++A+INTNVIV + G +VWLSHGI++SSC+I VE Sbjct: 60 NADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVE 99
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: XP_392070.3 (PREDICTED: neuronal acetylcholine receptor subunit alpha-10 [Apis mellifera]) HSP 1 Score: 60.8474 bits (146), Expect = 5.336e-12 Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD Y++A+INTNVIV + G +VWLSHGI++SSC+I VE Sbjct: 185 NADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVE 224
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: EFX64585.1 (hypothetical protein DAPPUDRAFT_66098, partial [Daphnia pulex]) HSP 1 Score: 59.6918 bits (143), Expect = 1.060e-11 Identity = 24/40 (60.00%), Postives = 36/40 (90.00%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD+ Y +++INTNVIV ++G +VWLSHGI++SSC+I+VE Sbjct: 95 NADAQYTSSVINTNVIVSDNGEVVWLSHGIFRSSCDINVE 134
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: gb|EFA02896.1| (nicotinic acetylcholine receptor subunit alpha5 [Tribolium castaneum]) HSP 1 Score: 58.151 bits (139), Expect = 4.514e-11 Identity = 23/40 (57.50%), Postives = 34/40 (85.00%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD + +++INTNVIV + G ++WLSHGIY+SSC+I+VE Sbjct: 111 NADPQFQSSVINTNVIVSSSGEVLWLSHGIYRSSCDINVE 150
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: gb|KYB28011.1| (nicotinic acetylcholine receptor subunit alpha5 [Tribolium castaneum]) HSP 1 Score: 57.7658 bits (138), Expect = 5.711e-11 Identity = 23/40 (57.50%), Postives = 34/40 (85.00%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD + +++INTNVIV + G ++WLSHGIY+SSC+I+VE Sbjct: 111 NADPQFQSSVINTNVIVSSSGEVLWLSHGIYRSSCDINVE 150
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: gb|KYB28012.1| (nicotinic acetylcholine receptor subunit alpha5 [Tribolium castaneum]) HSP 1 Score: 55.8398 bits (133), Expect = 2.537e-10 Identity = 23/39 (58.97%), Postives = 33/39 (84.62%), Query Frame = 0 Query: 17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 AD + +++INTNVIV + G ++WLSHGIY+SSC+I+VE Sbjct: 112 ADPQFQSSVINTNVIVSSSGEVLWLSHGIYRSSCDINVE 150
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: gb|KYB28013.1| (nicotinic acetylcholine receptor subunit alpha5 [Tribolium castaneum]) HSP 1 Score: 55.4546 bits (132), Expect = 3.374e-10 Identity = 23/39 (58.97%), Postives = 33/39 (84.62%), Query Frame = 0 Query: 17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 AD + +++INTNVIV + G ++WLSHGIY+SSC+I+VE Sbjct: 112 ADPQFQSSVINTNVIVSSSGEVLWLSHGIYRSSCDINVE 150
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: EFX76216.1 (hypothetical protein DAPPUDRAFT_55424, partial [Daphnia pulex]) HSP 1 Score: 55.4546 bits (132), Expect = 3.870e-10 Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +ADS YN+A+++TNVIV +DG + WLS I+KSSC I+VE Sbjct: 91 NADSEYNSALLSTNVIVTHDGNLTWLSSAIFKSSCGINVE 130
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: gb|KFM71318.1| (Neuronal acetylcholine receptor subunit alpha-7, partial [Stegodyphus mimosarum]) HSP 1 Score: 52.7582 bits (125), Expect = 2.830e-9 Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISV 54 +ADS YNNAI++TNVIV +DG + WLS I++SSC I+V Sbjct: 123 NADSQYNNAILSTNVIVSSDGNLTWLSSAIFRSSCKINV 161
BLAST of EMLSAG00000001200 vs. nr
Match: gi|808141486|ref|XP_003401124.2| (PREDICTED: LOW QUALITY PROTEIN: neuronal acetylcholine receptor subunit alpha-10-like [Bombus terrestris]) HSP 1 Score: 61.2326 bits (147), Expect = 1.586e-9 Identity = 25/40 (62.50%), Postives = 35/40 (87.50%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD Y++A+INTNVIV + G +VWLSHGI++SSC+I+VE Sbjct: 185 NADPQYSSAVINTNVIVSHTGQVVWLSHGIFRSSCDINVE 224
BLAST of EMLSAG00000001200 vs. nr
Match: gi|1009381870|gb|KYN04699.1| (Neuronal acetylcholine receptor subunit alpha-3 [Cyphomyrmex costatus]) HSP 1 Score: 61.2326 bits (147), Expect = 1.954e-9 Identity = 25/40 (62.50%), Postives = 35/40 (87.50%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD Y++A+INTNVIV + G +VWLSHGI++SSC+I+VE Sbjct: 149 NADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDINVE 188
BLAST of EMLSAG00000001200 vs. nr
Match: gi|1012974018|gb|KYQ48368.1| (Neuronal acetylcholine receptor subunit alpha-7 [Trachymyrmex zeteki]) HSP 1 Score: 61.2326 bits (147), Expect = 1.958e-9 Identity = 25/40 (62.50%), Postives = 35/40 (87.50%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD Y++A+INTNVIV + G +VWLSHGI++SSC+I+VE Sbjct: 245 NADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDINVE 284
BLAST of EMLSAG00000001200 vs. nr
Match: gi|1072898206|gb|AOT81841.1| (nicotinic acetylcholine receptor subunit alpha 5 [Frankliniella occidentalis]) HSP 1 Score: 60.8474 bits (146), Expect = 2.040e-9 Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +ADS Y+ A INTNVIV ++G + WLSHGIY+SSC+I VE Sbjct: 115 NADSQYSTAAINTNVIVYSNGMVTWLSHGIYRSSCDIDVE 154
BLAST of EMLSAG00000001200 vs. nr
Match: gi|1009403840|gb|KYN23338.1| (Neuronal acetylcholine receptor subunit alpha-7 [Trachymyrmex cornetzi]) HSP 1 Score: 60.8474 bits (146), Expect = 2.151e-9 Identity = 25/40 (62.50%), Postives = 35/40 (87.50%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD Y++A+INTNVIV + G +VWLSHGI++SSC+I+VE Sbjct: 203 NADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDINVE 242
BLAST of EMLSAG00000001200 vs. nr
Match: gi|307185663|gb|EFN71585.1| (Neuronal acetylcholine receptor subunit alpha-7 [Camponotus floridanus]) HSP 1 Score: 60.8474 bits (146), Expect = 2.268e-9 Identity = 25/40 (62.50%), Postives = 35/40 (87.50%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD Y++A+INTNVIV + G +VWLSHGI++SSC+I+VE Sbjct: 123 NADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDINVE 162
BLAST of EMLSAG00000001200 vs. nr
Match: gi|665796929|ref|XP_008546274.1| (PREDICTED: neuronal acetylcholine receptor subunit alpha-10 [Microplitis demolitor]) HSP 1 Score: 60.8474 bits (146), Expect = 2.270e-9 Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD Y++A+INTNVIV + G +VWLSHGI++SSCNI VE Sbjct: 132 NADPQYSSAVINTNVIVSSTGQVVWLSHGIFRSSCNIDVE 171
BLAST of EMLSAG00000001200 vs. nr
Match: gi|332029086|gb|EGI69100.1| (Neuronal acetylcholine receptor subunit alpha-7 [Acromyrmex echinatior]) HSP 1 Score: 60.8474 bits (146), Expect = 2.279e-9 Identity = 25/40 (62.50%), Postives = 35/40 (87.50%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD Y++A+INTNVIV + G +VWLSHGI++SSC+I+VE Sbjct: 195 NADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDINVE 234
BLAST of EMLSAG00000001200 vs. nr
Match: gi|1009363704|gb|KYM88757.1| (Neuronal acetylcholine receptor subunit alpha-7 [Atta colombica]) HSP 1 Score: 60.8474 bits (146), Expect = 2.391e-9 Identity = 25/40 (62.50%), Postives = 35/40 (87.50%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD Y++A+INTNVIV + G +VWLSHGI++SSC+I+VE Sbjct: 149 NADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDINVE 188
BLAST of EMLSAG00000001200 vs. nr
Match: gi|751206532|ref|XP_011155790.1| (PREDICTED: neuronal acetylcholine receptor subunit alpha-9-like [Solenopsis invicta]) HSP 1 Score: 60.8474 bits (146), Expect = 2.394e-9 Identity = 25/40 (62.50%), Postives = 35/40 (87.50%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD Y++A+INTNVIV + G +VWLSHGI++SSC+I+VE Sbjct: 80 NADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDINVE 119
BLAST of EMLSAG00000001200 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1305_size49401-snap-gene-0.21 (protein:Tk01703 transcript:maker-scaffold1305_size49401-snap-gene-0.21-mRNA-1 annotation:"neuronal acetylcholine receptor subunit alpha- partial") HSP 1 Score: 63.929 bits (154), Expect = 2.644e-14 Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0 Query: 17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 ADSNYN AIINTNVIV G +VWLSHGI+KSSC+ISVE Sbjct: 117 ADSNYNMAIINTNVIVSYTGEVVWLSHGIFKSSCDISVE 155 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001200 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001200 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000001200 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000001200 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 9
BLAST of EMLSAG00000001200 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 25
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BLAST of EMLSAG00000001200 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s119:21583..25034- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001200-683966 ID=EMLSAG00000001200-683966|Name=EMLSAG00000001200|organism=Lepeophtheirus salmonis|type=gene|length=3452bp|location=Sequence derived from alignment at LSalAtl2s119:21583..25034- (Lepeophtheirus salmonis)back to top Add to Basket
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