EMLSAG00000001200, EMLSAG00000001200-683966 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592758956|gb|GAXK01195457.1| (TSA: Calanus finmarchicus comp452919_c0_seq2 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 2.871e-1 Identity = 15/39 (38.46%), Postives = 23/39 (58.97%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISV 54 +AD NY+ + T + +DG + W I+KSSC+I V Sbjct: 1407 NADGNYHITTM-TKATLYHDGLVKWEPPAIFKSSCDIDV 1520
BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592758957|gb|GAXK01195456.1| (TSA: Calanus finmarchicus comp452919_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 3.159e-1 Identity = 15/39 (38.46%), Postives = 23/39 (58.97%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISV 54 +AD NY+ + T + +DG + W I+KSSC+I V Sbjct: 1419 NADGNYHITTM-TKATLYHDGLVKWEPPAIFKSSCDIDV 1532
BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592823786|gb|GAXK01130782.1| (TSA: Calanus finmarchicus comp178851_c13_seq89 transcribed RNA sequence) HSP 1 Score: 29.6462 bits (65), Expect = 4.030e-1 Identity = 16/55 (29.09%), Postives = 27/55 (49.09%), Query Frame = 0 Query: 12 CPPKHADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSS--CNISVESTILNGHLH 64 CPP+H S + +II I++ + L+ I+ SS C I + + + LH Sbjct: 54 CPPQHQPSGHRASIIRPATIILQLTLQIILTTFIFSSSFLCYIIITYSCQDRFLH 218
BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592921181|gb|GAXK01037194.1| (TSA: Calanus finmarchicus comp536200_c0_seq2 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 4.540e-1 Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = 0 Query: 28 TNVIVMNDGYIVWLSHGIYKSSCNISV 54 TNV+V + G ++ GI+KSSC I + Sbjct: 565 TNVVVTSKGTCTYIPPGIFKSSCQIDI 645
BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592921182|gb|GAXK01037193.1| (TSA: Calanus finmarchicus comp536200_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 4.599e-1 Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = 0 Query: 28 TNVIVMNDGYIVWLSHGIYKSSCNISV 54 TNV+V + G ++ GI+KSSC I + Sbjct: 565 TNVVVTSKGTCTYIPPGIFKSSCQIDI 645
BLAST of EMLSAG00000001200 vs. L. salmonis peptides
Match: EMLSAP00000001200 (pep:novel supercontig:LSalAtl2s:LSalAtl2s119:21583:25034:-1 gene:EMLSAG00000001200 transcript:EMLSAT00000001200 description:"snap-LSalAtl2s119-processed-gene-0.19") HSP 1 Score: 132.109 bits (331), Expect = 9.546e-42 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 Query: 1 MNFGYFKCHLLCPPKHADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVESTILNGHLH 64 MNFGYFKCHLLCPPKHADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVESTILNGHLH Sbjct: 1 MNFGYFKCHLLCPPKHADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVESTILNGHLH 64
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: XP_625040.2 (PREDICTED: neuronal acetylcholine receptor subunit alpha-10 [Apis mellifera]) HSP 1 Score: 60.8474 bits (146), Expect = 5.267e-12 Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD Y++A+INTNVIV + G +VWLSHGI++SSC+I VE Sbjct: 60 NADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVE 99
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: XP_392070.3 (PREDICTED: neuronal acetylcholine receptor subunit alpha-10 [Apis mellifera]) HSP 1 Score: 60.8474 bits (146), Expect = 5.336e-12 Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD Y++A+INTNVIV + G +VWLSHGI++SSC+I VE Sbjct: 185 NADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVE 224
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: EFX64585.1 (hypothetical protein DAPPUDRAFT_66098, partial [Daphnia pulex]) HSP 1 Score: 59.6918 bits (143), Expect = 1.060e-11 Identity = 24/40 (60.00%), Postives = 36/40 (90.00%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD+ Y +++INTNVIV ++G +VWLSHGI++SSC+I+VE Sbjct: 95 NADAQYTSSVINTNVIVSDNGEVVWLSHGIFRSSCDINVE 134
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: gb|EFA02896.1| (nicotinic acetylcholine receptor subunit alpha5 [Tribolium castaneum]) HSP 1 Score: 58.151 bits (139), Expect = 4.514e-11 Identity = 23/40 (57.50%), Postives = 34/40 (85.00%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD + +++INTNVIV + G ++WLSHGIY+SSC+I+VE Sbjct: 111 NADPQFQSSVINTNVIVSSSGEVLWLSHGIYRSSCDINVE 150
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: gb|KYB28011.1| (nicotinic acetylcholine receptor subunit alpha5 [Tribolium castaneum]) HSP 1 Score: 57.7658 bits (138), Expect = 5.711e-11 Identity = 23/40 (57.50%), Postives = 34/40 (85.00%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD + +++INTNVIV + G ++WLSHGIY+SSC+I+VE Sbjct: 111 NADPQFQSSVINTNVIVSSSGEVLWLSHGIYRSSCDINVE 150
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: gb|KYB28012.1| (nicotinic acetylcholine receptor subunit alpha5 [Tribolium castaneum]) HSP 1 Score: 55.8398 bits (133), Expect = 2.537e-10 Identity = 23/39 (58.97%), Postives = 33/39 (84.62%), Query Frame = 0 Query: 17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 AD + +++INTNVIV + G ++WLSHGIY+SSC+I+VE Sbjct: 112 ADPQFQSSVINTNVIVSSSGEVLWLSHGIYRSSCDINVE 150
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: gb|KYB28013.1| (nicotinic acetylcholine receptor subunit alpha5 [Tribolium castaneum]) HSP 1 Score: 55.4546 bits (132), Expect = 3.374e-10 Identity = 23/39 (58.97%), Postives = 33/39 (84.62%), Query Frame = 0 Query: 17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 AD + +++INTNVIV + G ++WLSHGIY+SSC+I+VE Sbjct: 112 ADPQFQSSVINTNVIVSSSGEVLWLSHGIYRSSCDINVE 150
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: EFX76216.1 (hypothetical protein DAPPUDRAFT_55424, partial [Daphnia pulex]) HSP 1 Score: 55.4546 bits (132), Expect = 3.870e-10 Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +ADS YN+A+++TNVIV +DG + WLS I+KSSC I+VE Sbjct: 91 NADSEYNSALLSTNVIVTHDGNLTWLSSAIFKSSCGINVE 130
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: gb|KFM71318.1| (Neuronal acetylcholine receptor subunit alpha-7, partial [Stegodyphus mimosarum]) HSP 1 Score: 52.7582 bits (125), Expect = 2.830e-9 Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISV 54 +ADS YNNAI++TNVIV +DG + WLS I++SSC I+V Sbjct: 123 NADSQYNNAILSTNVIVSSDGNLTWLSSAIFRSSCKINV 161
BLAST of EMLSAG00000001200 vs. nr
Match: gi|662220656|ref|XP_008484475.1| (PREDICTED: neuronal acetylcholine receptor subunit alpha-3-like, partial [Diaphorina citri]) HSP 1 Score: 61.6178 bits (148), Expect = 9.284e-11 Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 0 Query: 17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 AD+ YN+A+INTNVIV DG + WLSHGIY+SSC+I VE Sbjct: 1 ADAQYNSAVINTNVIVTADGEVTWLSHGIYRSSCDIDVE 39
BLAST of EMLSAG00000001200 vs. nr
Match: gi|1101349428|ref|XP_018900624.1| (PREDICTED: neuronal acetylcholine receptor subunit beta-3-like isoform X2 [Bemisia tabaci]) HSP 1 Score: 62.7734 bits (151), Expect = 1.413e-10 Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 0 Query: 17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 ADS YN+A+INTNVIV +DG + WLSHGIY+SSC+I VE Sbjct: 122 ADSQYNSAVINTNVIVKHDGEVTWLSHGIYRSSCDIDVE 160
BLAST of EMLSAG00000001200 vs. nr
Match: gi|584600374|gb|AHJ11213.1| (nicotinic acetylcholine receptor alpha5 [Locusta migratoria]) HSP 1 Score: 63.5438 bits (153), Expect = 2.407e-10 Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +ADS YN+A+INTNVIV G +VWLSHGI++SSC+I+VE Sbjct: 84 NADSQYNSAVINTNVIVTYTGEVVWLSHGIFRSSCDINVE 123
BLAST of EMLSAG00000001200 vs. nr
Match: gi|1101349426|ref|XP_018900623.1| (PREDICTED: neuronal acetylcholine receptor subunit alpha-10-like isoform X1 [Bemisia tabaci]) HSP 1 Score: 62.7734 bits (151), Expect = 3.550e-10 Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 0 Query: 17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 ADS YN+A+INTNVIV +DG + WLSHGIY+SSC+I VE Sbjct: 122 ADSQYNSAVINTNVIVKHDGEVTWLSHGIYRSSCDIDVE 160
BLAST of EMLSAG00000001200 vs. nr
Match: gi|646715003|gb|KDR18759.1| (Neuronal acetylcholine receptor subunit alpha-7, partial [Zootermopsis nevadensis]) HSP 1 Score: 62.7734 bits (151), Expect = 4.207e-10 Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +ADS YN+A+INTNVIV G +VWLSHGI++SSC+I+VE Sbjct: 97 NADSQYNSAVINTNVIVTYTGEVVWLSHGIFRSSCDINVE 136
BLAST of EMLSAG00000001200 vs. nr
Match: gi|1059391857|ref|XP_017770382.1| (PREDICTED: neuronal acetylcholine receptor subunit alpha-10-like [Nicrophorus vespilloides]) HSP 1 Score: 62.3882 bits (150), Expect = 6.308e-10 Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD Y +++INTNVIV N G +VWLSHGIY+SSC+I+VE Sbjct: 123 NADPQYQSSVINTNVIVSNSGKVVWLSHGIYRSSCDINVE 162
BLAST of EMLSAG00000001200 vs. nr
Match: gi|755940528|ref|XP_011298138.1| (PREDICTED: neuronal acetylcholine receptor subunit alpha-7-like [Fopius arisanus]) HSP 1 Score: 62.3882 bits (150), Expect = 6.956e-10 Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD Y++A+INTNVIV + G +VWLSHGI++SSCNI VE Sbjct: 123 NADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCNIDVE 162
BLAST of EMLSAG00000001200 vs. nr
Match: gi|970880585|ref|XP_015112532.1| (PREDICTED: neuronal acetylcholine receptor subunit alpha-7-like [Diachasma alloeum]) HSP 1 Score: 62.003 bits (149), Expect = 8.205e-10 Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD Y++A+INTNVIV + G +VWLSHGI++SSCNI VE Sbjct: 113 NADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCNIDVE 152
BLAST of EMLSAG00000001200 vs. nr
Match: gi|942365977|gb|JAN64918.1| (Neuronal acetylcholine receptor subunit alpha-10 [Daphnia magna] >gi|1022772256|gb|KZS16441.1| Neuronal acetylcholine receptor subunit alpha-7 [Daphnia magna]) HSP 1 Score: 61.2326 bits (147), Expect = 1.501e-9 Identity = 24/40 (60.00%), Postives = 36/40 (90.00%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD+ Y +++INTNVIV ++G +VWLSHGI++SSC+I+VE Sbjct: 130 NADAQYTSSVINTNVIVSDNGEVVWLSHGIFRSSCDINVE 169
BLAST of EMLSAG00000001200 vs. nr
Match: gi|942411763|gb|JAN87811.1| (Neuronal acetylcholine receptor subunit alpha-10 [Daphnia magna]) HSP 1 Score: 61.2326 bits (147), Expect = 1.547e-9 Identity = 24/40 (60.00%), Postives = 36/40 (90.00%), Query Frame = 0 Query: 16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 +AD+ Y +++INTNVIV ++G +VWLSHGI++SSC+I+VE Sbjct: 130 NADAQYTSSVINTNVIVSDNGEVVWLSHGIFRSSCDINVE 169
BLAST of EMLSAG00000001200 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1305_size49401-snap-gene-0.21 (protein:Tk01703 transcript:maker-scaffold1305_size49401-snap-gene-0.21-mRNA-1 annotation:"neuronal acetylcholine receptor subunit alpha- partial") HSP 1 Score: 63.929 bits (154), Expect = 2.644e-14 Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0 Query: 17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55 ADSNYN AIINTNVIV G +VWLSHGI+KSSC+ISVE Sbjct: 117 ADSNYNMAIINTNVIVSYTGEVVWLSHGIFKSSCDISVE 155 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001200 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001200 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000001200 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000001200 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 9
BLAST of EMLSAG00000001200 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 25
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BLAST of EMLSAG00000001200 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s119:21583..25034- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001200-683966 ID=EMLSAG00000001200-683966|Name=EMLSAG00000001200|organism=Lepeophtheirus salmonis|type=gene|length=3452bp|location=Sequence derived from alignment at LSalAtl2s119:21583..25034- (Lepeophtheirus salmonis)back to top Add to Basket
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