EMLSAG00000001235, EMLSAG00000001235-684001 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001235
Unique NameEMLSAG00000001235-684001
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001235 vs. L. salmonis peptides
Match: EMLSAP00000001235 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11:296044:301669:-1 gene:EMLSAG00000001235 transcript:EMLSAT00000001235 description:"snap-LSalAtl2s11-processed-gene-3.43")

HSP 1 Score: 245.358 bits (625), Expect = 1.742e-84
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 
Query:    1 MSVRIYIFDAIGFLNLMMWVTLRNTTLKIGGNEPLRKINVNIKRIVKFKQESINMKEIFTHKGNVIESQSQVVSRRFRVQVKYRVIDSEIKLSGKSRVQVSTSDGSIYVLAYELFCRPNIL 121
            MSVRIYIFDAIGFLNLMMWVTLRNTTLKIGGNEPLRKINVNIKRIVKFKQESINMKEIFTHKGNVIESQSQVVSRRFRVQVKYRVIDSEIKLSGKSRVQVSTSDGSIYVLAYELFCRPNIL
Sbjct:    1 MSVRIYIFDAIGFLNLMMWVTLRNTTLKIGGNEPLRKINVNIKRIVKFKQESINMKEIFTHKGNVIESQSQVVSRRFRVQVKYRVIDSEIKLSGKSRVQVSTSDGSIYVLAYELFCRPNIL 121
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001235 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001235 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001235 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000012351.742e-84100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s11:296044... [more]
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BLAST of EMLSAG00000001235 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001235 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001235 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001235 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s11supercontigLSalAtl2s11:296044..301669 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s11-processed-gene-3.43
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001235 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001235EMLSAT00000001235-697082Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s11:296044..301669-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001235-684001 ID=EMLSAG00000001235-684001|Name=EMLSAG00000001235|organism=Lepeophtheirus salmonis|type=gene|length=5626bp|location=Sequence derived from alignment at LSalAtl2s11:296044..301669- (Lepeophtheirus salmonis)
ATGTCGGTATGTTTAAAAAAAGAAACCGAAAAACAATATGGTATTCCCGA
CAGTTTGTAGGAAAGCAGCTTAGCTGTAATGACGTTTCAATAGATCAGCA
CTGAATCGCTATTAATTAAAGGAAATATACAAAAATAACACCCTGTATCT
TGCCAGGACATATATAGGAATTACGTCCATGTTGACCCTCAATTCTTCTC
CAATTCCAACAAGGACTTGAACTTAAAACTCCCTACAAATTCTCAGTCTT
ACTTTTTGTCATTCACACACTTGGGATTACTTTATACTTAAATCTTTTCT
CCTCAAGAATGAAAAAATAAAAACAATGTTCAGGTTACAACTACAAAAAG
TCAAATACTTATCTAAGGTTATATTTTATACAACTCTACAAAGGTTAACA
AACCAACGAATGAGTATTTAATTATAATATGAATTAATATTGGATCTGTC
ACGAATGTATGACTTAAAATCTATTTTTTTCGCCCTATAATATAAAATAA
ATTATATAATTTGTACAATCCCTTGCTGGAATTCCGTGGGATCTCAAAAA
TGTAAAAATTAACTTTTCGGGAAATGAAAAAAAAAGTAAAAACATTTTTA
GATCCAGAATTTAGATGCATAAAATGTATGCCTGTATTGAAATAGAATTT
GATGGAAATGTTTAGGTCGTTAACTACTTTTAGATACTTATATTGTATGC
TTATATAAGAAAGAGAAAGGCATAGTACTTTTTTAATAATAAAAAAAGTA
TACGTGATTTTCAAAACATCTCTATTGTTTTATTTTTGATGCATTTTATT
CATATAACGATAACCTTCTTATGTCACGTAATCTCTTTATTCACTCAATA
CAAGCAAGTAAAAAAAGTTGTATTTATATTTGCCCTGTTTTTGGATTAAT
ATCCCTCCTTCATAAAACCATTTTCTGCMGGAGACAATYAAAACTGARTT
TGGTTTGATARCACAKAAGCCATTTTAATGTAAAAATGGGATTTTGTGCC
CAAATTTGCCCCTTTTAGACCTCATGTACTCTCCCAAATATGATGTTATC
AGTATTTAGAGTATAATTAAAAAAATACTTAATACTGACTAACTAGTTAT
AATAATAACATCAAAAGAACAATTTCTTACTCAACTTACATCCAAAGATA
TCGTTTAAAAAAGAAAAGAAAAAAACACTGAGAATTCATAAAGTTGGATT
AAGTTAAGTCAGTGTTTTATTATAAGAAAAGTGTTTTTGTATCTAGGGGA
AAATATAGAACCAAAAATGGAACAACTTAATATACTGATTAGGGATGAGT
ATCGGCCTGAAAATCCTACKCCAGTCGGTAACCTATGTAATTTTAACCTA
TTCGGCCCAAATTCTCTCTGTACCAGTCTATTCAGTTTACAGTAATGATT
TAACGTCTTTTTTCTATATTAATTGAGACAAAAATAAATTTGGCCTTTGA
AAAATTCCCTTCTTAAGACCGAACTGAAAAAAAAAAAAAATACATATTTA
ACAAAAAAATGTTTAACCATTTCAATCTCTATACATTTTCTTTTTTTTTT
ACAGGTAAGAATTTATATTTTTGATGCGATAGGATTCCTAAACGTAATGA
CCAAACATTTATATATTCTTTTTTTAAAATAATGTACGAATATATATGTG
TAAAGCTTTAACTCACTGATAAAGTATATAAAATATTACAAAATTTAGCA
TAAATAATAAGAATAATAAATAGGTAGGTGGCCTCCAAGGGAAAATAAAG
ATGGCATAATTAAAAATTTGCATATAATAATATAATTAATAAAATTCTTT
TATTTTTCCTTCCTAATTCTTCGAAATATATTTTTTAAATATGGATATGA
AAAAAAGAAAAAATATTCTGCATCTCGAGTTCTTCAAATGAAGAAATATG
AATAATATTTAGCAAAAAATAGTATTACTCATATTTTTTTTGTATGTAGA
TATGCTTCACACATATACAACTCATCAACTGAATATATTTGGCTTCTCCT
TTTAATTTAAATTGTATTTTTTTACCCTCATAATGACCACTAGTTAAATG
CGTAATCATATTTTTTGAAATTAGAATCAGGGACTATTTATAAGAACGAA
AAAGTTTTTTTTTGAAAATCTGATAATTTTTTAGTTTTTGGTTAGAAATC
AAGAATTTTTGACTGACTGTTTCTAAAAAAATGAATGATTTTATCCATAA
AAAACTTCTACAAGTAGATTTGTAACTTAAAAAATAGGTGGTTTTATAAT
TTTTTTAATGAGGCAATACATTTGCAACACATTGGAAGGTCATAAGTAAG
AAATTCACATATTTTCTGTTAAATAATCCAATAATAATTTATTTGCAATA
ACATCCATGAAGTTTTTGAGCCAAAAAATTGATAAACTGCTCAAATCAAG
GATAAACTCATTTATGAAATATAATACGCATGAAGTTACAGGGTTAAAGC
TTCTGTTCAATTAATTTTGAAACGTCCTTTTGTTGTTAGATTCGAAAATA
TTCTACATAGGAGTAAGATTGTGTTGATTTTAAATTTAGGATCAAAAATC
AAATTCCAGTTTCACAGATTGGTCTCAAAAACAAAAAAATGATGTTATCA
ATATAGTATTTTTTATCATCTTTATCGAAGTAATCAGAATTATCATTATT
TGACTAGAACTGTATTGCTGTTGCATTACAATAATTTTGCTGATGTTTCT
ACTGCAAATCGAATGAGTTAAATTACATAAATTATTCTTTACTAGTTGAT
GATGTGGGTTACTTTACGAAGTGAGTTTTGGAATTGCGAATACATTTTAA
CAAACAATCCAAATTGATTCAGCTTTGAACATAAAAAGTTAAGTGTTCAG
TCTCAAGGACTGATGTGATAGATACTTCTTATTTTTATTCTTCTGTGGAG
TGAACCAAGTTTTTGGGACAGGTACTTCATAATATCCTAAGGATATGATT
TTAAGAACTCAATATACCTACATACATATAAAGTACGTCAGTGATTGACG
TGTTTCCAAAGTTACTTTCATTTTATAGTTTCTTTACGTAAACAGTCAAC
TTTTCTTCCCACAGAATGTCCTATTTTTTGGCAATTAAAAAATGTCTGAC
TTTGTAGATCAAAATATATATTTAGAAGGTCTTTCAAAATATACCCCTAG
AATAGCTTTTAATTTTTTTCTATAAGACACAACGCTAAAAATAGGTGGAA
ATGAGCCTCTTAGAAAGGTGTGTCAAACATTCGGCCTTTAAACTATATGT
AATTGGGGATACATCGGAGACACTATTATGAAATACTGAACTGTGAATAA
GACTTTTTAATAAAACACACTTTAGAGAAAAATAAAAGTACACCATTCTA
TTTTTATTTACTGATTTGAGATCCACATTGAGATCCAATAAACTTAAATG
AGCTGGACATCCCTGCTTCAAGGGATCATTCATCTCTAGTCTCCGTCCTT
CATTTTTAGCATTATGTCCGTAAAAAAATATAATTCACCACAGTTGGCAA
GTGGATGAAACCACAAATTTAAAGAAAAAACTAATTTGAAAGACCTACAT
ATATACAATATCAGTGTTTTAATATATTAAGTACTTACAATATAAAAAGG
TAGACACTATTTTCTGGTCATAAAATAAGTATACATAGGTAAGCTCTTAC
TATAATCTAAATTATGTTTTTATATACTGCATTATATATGTAATTCCTTG
AATGATTCTAATTAAGCTGAATGAATATGTATTAACTTTACATACTATTC
GAGAAATTGTATCCTTTGCTAACCTTGCCAATAAGGTTATCATGCATATA
CTTAATTTGTATATACATAGGTATAGTTTTAAACCATAAAGAGATTAAAC
TTCACATCAAAGCCTTGATAAATAGTTTTATAACACTTAAAAAGTCTACA
TACATAATATGTAACTAATTTCTTCATAATTTGCAAAATACAGCGTTTTA
TTACTTATTATCACAGTACATCATGTATGTATTTATGTGCGTACATTGTT
TTCAGATAAACGTCAATATCAAAAGGATCGTCAAATTCAAGCAAGAGTCC
ATTAATATGGTATATAAATTTATATAATGGCAATAAATTAACTTAACGGT
CGTGAACAAATACAGTTCATCTTCATAATTAGCTCCACACAATGATATAA
TTGGACATTAATTGATCGGGTTGTATAGCACGAGGTCATTTTGCAATAGT
TGCGGTAAATCCCTTTAATAATATGTTCAAATATCTATATAAGAAAGAGA
TTTTTACGCATAAAGGAAATGTCATTGAGGTATTTTCAAGTGTATTTCCC
TGACGGACTACAACTTATAAAAGGTATGAAAATGTTGTGCACAAACTCTA
ACAATTAGATAATACAAATTAAAATACACACCCACCAAAAAAAAAAAAAT
GAAATGAAGTTTTAAGTGACTTTTGATCAGACTTATACTAGTTTGAATAC
TTGAATAATTTTATCGAGTTCAGTTCAAGTCCTCAGAAATGAAAATATAC
TTTGAAGAGTATTTTTAATAATTTTGAGAAAAATAGAGTCAAAGTCAAGT
TGTGAGTCGTAGGTTTAGAGTCCAAGTCAAGTATCGAGTCATTGATTCCG
AGATTAAATTGAGTGGCAAGTCTCGAGTCCAAGTCTCAACTTCTGAGTAA
TAAACATTTTTATTCGTAAAATTAAAACCCATTGGATACAGGTCGTTTGA
AAAGTTCGTAGCTTAACATAGTAAAACACGTTTAATTTTAAAATTTGATT
TATTTATTCAATGTAATAACTTTTGAGGGGATTTCAACAATTTTAACCAC
CATACAATTTTTCAATGCCATTTTTACGGTAAGATTTATCTTTAGTCTCA
AAACATGCTTCAGTTTCATGGATTACCTCTGATTTTTTTCCAGCAAGCAT
ACTTTTGCTATCTACTAATATGAAAAAGTAACTGGGGCCAGATTTTAAGA
ATACGGTATACTTATAAATTCGTAGCCCAATTTTGCCATCGTTTTCAGTG
ATTTGTGACACAGTTTTTCATTGTCTTAATGAAACATAACCTTTTTCATC
ACTAAATGGAGTTGTTTGTTGCTACTAGTTTTTTTTTCATGGATTGTGAG
CTCAGAAACTTTGCACAAAGATTGTACATGTCTAAATATTCATGCACAAT
ATGTCAAAAACGTTCATTTGATATCTGTAGTGTCTCCGATATGTCGATCA
AACTCATTTAAAGATAATTCAAAGTTATATTATTTTGTCGGTAACAACCT
TCTTCGGACTACGTGTATCGTCTTTTACACACATTTCGCCTCGTTTAAAT
TTCGAAAACCATTATTCAACGGTTGATTTTGCTGATTCAGAGTCCAAATA
ATGTTTATTAAGTCAAGCCTTGGGTTCAACAGTTTTTTCCCTACTAAAAA
GAAATGCTTCATTAACAAAAGAAATTCTTTTTTATTCATGTTTTATACAA
TAACAAAAGTTTCTCACTACCAATGCTACATCTCGCAAACCAATCATCCG
ACAGCTGACAAACTTGTACACCTATCGTTTGAAGGTTAATACTAACTAAA
AACCATTTTATTTAATTCTAGTGGATCCATCTATGTATTAGCCTACGAAC
TTTTCTGCCGACCTAATATACTGTAG
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