EMLSAG00000001237, EMLSAG00000001237-684003 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001237
Unique NameEMLSAG00000001237-684003
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001237 vs. C. finmarchicus
Match: gi|592854284|gb|GAXK01103260.1| (TSA: Calanus finmarchicus comp61014_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 67.781 bits (164), Expect = 6.574e-13
Identity = 60/148 (40.54%), Postives = 86/148 (58.11%), Query Frame = 0 
Query:    5 GTNGWTIGI-LDGNSFNIVTRNSAPVCPEGI-NGAYDRDITLDTTFNIACHSEXXXXXXXXXXXXXXXXXXXXXQGAHLGEYVMKGKHNGYPMYYKQYRDIESFLFYRKTGLPMDGWMINSDGPRSQHFSITTHSETYCPNEIKTGYN 150
            G  GW +G  L  +SF + T++++  CP GI  G    D T D TF+I CHS+ VKV+CCP V ++S   ++  QGA +GEY   G +NG+  Y  Q     + LFYRK+G   DGWM+  D      F +TT  + YCP+ + +GY+
Sbjct:  447 GPQGWIVGPQLLEDSFYLTTQSTS-ACPAGIFGGFDSDDTTKDDTFSIECHSDMVKVECCPTVTITSEGSLATKQGAIMGEYKKVGDYNGHTRY--QGGHANTTLFYRKSGHGPDGWMVGMD-LEENSFIVTTRDKAYCPDVVTSGYD 878

HSP 2 Score: 43.1282 bits (100), Expect = 1.161e-4
Identity = 23/55 (41.82%), Postives = 32/55 (58.18%), Query Frame = 0 
Query:    4 HGTNGWTIGI-LDGNSFNIVTRNSAPVCPEGINGAYDR--DITLDTTFNIACHSE 55
            HG +GW +G+ L+ NSF + TR+ A  CP+ +   YDR  D   DT F I C + 
Sbjct:  393 HGPDGWMVGMDLEENSFIVTTRDKA-YCPDVVTSGYDRNNDQGQDTAFRIFCQAS 554
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BLAST of EMLSAG00000001237 vs. C. finmarchicus
Match: gi|592750770|gb|GAXK01203643.1| (TSA: Calanus finmarchicus comp1398718_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 5.451e+0
Identity = 16/48 (33.33%), Postives = 24/48 (50.00%), Query Frame = 0 
Query:   77 QGAHLGEYVMKGKHNGYPMYYKQYRDIESFLFYRKTGLPMDGWMINSD 124
            Q   +G +   G+HNG P Y  Q    + +LFY K+G     W++  D
Sbjct:  773 QSKRIGLFQFVGEHNGRPAY--QNMASKEYLFYTKSGAE---WLVGPD 901
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BLAST of EMLSAG00000001237 vs. C. finmarchicus
Match: gi|592833218|gb|GAXK01124326.1| (TSA: Calanus finmarchicus comp24137_c9_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 8.911e+0
Identity = 21/77 (27.27%), Postives = 31/77 (40.26%), Query Frame = 0 
Query:   77 QGAHLGEYVMKGKHNGYPMYYKQYRDIES----FLFYRKTGLPMDGWMINSD--GPRSQHFSITTHSETYCPNEIKT 147
            +   LG Y  +G H GYP + K     ++    FLFY  +      W    D  G ++  F+    S   CP +  T
Sbjct:  677 EANQLGHYHFQGMHGGYPYFMKMAVSTQTNEPMFLFYDTSK---KQWRFAGDLGGKKNLFFATEEKSVAKCPGDPTT 898
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BLAST of EMLSAG00000001237 vs. L. salmonis peptides
Match: EMLSAP00000001237 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1201:76114:76652:-1 gene:EMLSAG00000001237 transcript:EMLSAT00000001237 description:"maker-LSalAtl2s1201-augustus-gene-0.12")

HSP 1 Score: 334.339 bits (856), Expect = 1.846e-118
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 
Query:    1 QYEHGTNGWTIGILDGNSFNIVTRNSAPVCPEGINGAYDRDITLDTTFNIACHSEKVKVDCCPKVKVSSSSIISKVQGAHLGEYVMKGKHNGYPMYYKQYRDIESFLFYRKTGLPMDGWMINSDGPRSQHFSITTHSETYCPNEIKTGYNLXQGRRCHL 159
            QYEHGTNGWTIGILDGNSFNIVTRNSAPVCPEGINGAYDRDITLDTTFNIACHSEKVKVDCCPKVKVSSSSIISKVQGAHLGEYVMKGKHNGYPMYYKQYRDIESFLFYRKTGLPMDGWMINSDGPRSQHFSITTHSETYCPNEIKTGYNLXQGRRCHL
Sbjct:    1 QYEHGTNGWTIGILDGNSFNIVTRNSAPVCPEGINGAYDRDITLDTTFNIACHSEKVKVDCCPKVKVSSSSIISKVQGAHLGEYVMKGKHNGYPMYYKQYRDIESFLFYRKTGLPMDGWMINSDGPRSQHFSITTHSETYCPNEIKTGYNLXQGRRCHL 159
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001237 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001237 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592854284|gb|GAXK01103260.1|6.574e-1340.54TSA: Calanus finmarchicus comp61014_c0_seq1 transc... [more]
gi|592750770|gb|GAXK01203643.1|5.451e+033.33TSA: Calanus finmarchicus comp1398718_c1_seq1 tran... [more]
gi|592833218|gb|GAXK01124326.1|8.911e+027.27TSA: Calanus finmarchicus comp24137_c9_seq1 transc... [more]
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BLAST of EMLSAG00000001237 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000012371.846e-118100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1201:7611... [more]
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BLAST of EMLSAG00000001237 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001237 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001237 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001237 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1201supercontigLSalAtl2s1201:76114..76652 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1201-augustus-gene-0.12
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001237 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001237EMLSAT00000001237-697084Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1201:76114..76652-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001237-684003 ID=EMLSAG00000001237-684003|Name=EMLSAG00000001237|organism=Lepeophtheirus salmonis|type=gene|length=539bp|location=Sequence derived from alignment at LSalAtl2s1201:76114..76652- (Lepeophtheirus salmonis)
CAATACGAACACGGCACAAATGGCTGGACAATTGGAATCCTGGATGGAAA
CTCCTTTAACATTGTCACCCGTAACTCTGCTCCAGTTTGTCCAGAAGGGA
TTAATGGAGCATATGATAGAGATATTACTCTGGATACAACTTTCAACATT
GCTTGTCATTCTGAAAAAGTAAAAGTGGATTGCTGTCCCAAAGTAAAGGT
GTCAAGTTCTTCAATAATTTCAAAGGTTCAAGGTGCTCATTTGGGTGAAT
ATGTCATGAAAGGAAAGCACAATGGCTATCCCATGTATTACAAGCAGTAT
CGTGACATTGAAAGCTTCTTATTCTATAGAAAAACCGGTAAGATAATTAT
TAAAGTTCATTCAAGAGCTTCTTAAGTAAATTTGTCTTGTTTTTAGGATT
ACCAATGGATGGATGGATGATTAACTCTGACGGACCCAGGTCTCAACATT
TTTCCATTACAACACACTCTGAAACGTATTGTCCCAATGAAATAAAAACT
GGGTATAATCTTGNACAAGGACGAAGATGCCACCTTTAA
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