EMLSAG00000001275, EMLSAG00000001275-684041 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001275
Unique NameEMLSAG00000001275-684041
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001275 vs. C. finmarchicus
Match: gi|592761574|gb|GAXK01192839.1| (TSA: Calanus finmarchicus comp6639269_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 54.299 bits (129), Expect = 5.866e-9
Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 0 
Query:  106 REKQLHLNSRLSSGDVWYRHYYPEGGWGYIIIFVCLVVSVLNCGLQLSLCGTVLP 160
            + +Q     ++  G V +R YYPEGGWGY+IIFV L++++L  G  LS    V P
Sbjct:   84 KARQWMFQGKVQ-GSVIFRQYYPEGGWGYVIIFVGLIMTMLTQGFHLSFGILVKP 245
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BLAST of EMLSAG00000001275 vs. C. finmarchicus
Match: gi|592949209|gb|GAXK01009344.1| (TSA: Calanus finmarchicus comp408960_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 52.373 bits (124), Expect = 2.951e-7
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 0 
Query:  124 RHYYPEGGWGYIIIFVCLVVSVLNCGLQLSLCGTVLPI 161
            +HYYPEGGWGYI++   L V++L  GLQLS   T+L I
Sbjct: 1007 QHYYPEGGWGYIVLTCALAVNILAHGLQLSFGVTLLAI 1120
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BLAST of EMLSAG00000001275 vs. C. finmarchicus
Match: gi|592949210|gb|GAXK01009343.1| (TSA: Calanus finmarchicus comp408960_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 52.373 bits (124), Expect = 2.951e-7
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 0 
Query:  124 RHYYPEGGWGYIIIFVCLVVSVLNCGLQLSLCGTVLPI 161
            +HYYPEGGWGYI++   L V++L  GLQLS   T+L I
Sbjct: 1007 QHYYPEGGWGYIVLTCALAVNILAHGLQLSFGVTLLAI 1120
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BLAST of EMLSAG00000001275 vs. C. finmarchicus
Match: gi|592949218|gb|GAXK01009335.1| (TSA: Calanus finmarchicus comp408960_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 51.9878 bits (123), Expect = 3.323e-7
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 0 
Query:  124 RHYYPEGGWGYIIIFVCLVVSVLNCGLQLSLCGTVLPI 161
            +HYYPEGGWGYI++   L V++L  GLQLS   T+L I
Sbjct:  352 QHYYPEGGWGYIVLTCALAVNILAHGLQLSFGVTLLAI 465
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BLAST of EMLSAG00000001275 vs. C. finmarchicus
Match: gi|592954224|gb|GAXK01004329.1| (TSA: Calanus finmarchicus comp612285_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 45.4394 bits (106), Expect = 6.287e-5
Identity = 14/32 (43.75%), Postives = 25/32 (78.12%), Query Frame = 0 
Query:  124 RHYYPEGGWGYIIIFVCLVVSVLNCGLQLSLC 155
            +HYYPEGGWG++I+ V ++ +++  G+Q+ L 
Sbjct: 2322 QHYYPEGGWGWVIVLVAVLANIVTYGMQMGLA 2417
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BLAST of EMLSAG00000001275 vs. C. finmarchicus
Match: gi|592954225|gb|GAXK01004328.1| (TSA: Calanus finmarchicus comp612285_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 45.0542 bits (105), Expect = 1.034e-4
Identity = 14/32 (43.75%), Postives = 25/32 (78.12%), Query Frame = 0 
Query:  124 RHYYPEGGWGYIIIFVCLVVSVLNCGLQLSLC 155
            +HYYPEGGWG++I+ V ++ +++  G+Q+ L 
Sbjct: 2322 QHYYPEGGWGWVIVLVAVLANIVTYGMQMGLA 2417
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BLAST of EMLSAG00000001275 vs. C. finmarchicus
Match: gi|592859022|gb|GAXK01098540.1| (TSA: Calanus finmarchicus comp6119262_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 40.817 bits (94), Expect = 3.680e-4
Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = 0 
Query:  124 RHYYPEGGWGYIIIFVCLVVSVLNCGLQLSLCGTVLP 160
            +HYYPEGGWG +++   ++V VL  GL L+  G +LP
Sbjct:  212 QHYYPEGGWGVVLMLAVIMVQVLVHGLVLA-YGVMLP 319
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BLAST of EMLSAG00000001275 vs. C. finmarchicus
Match: gi|592797525|gb|GAXK01157043.1| (TSA: Calanus finmarchicus comp1679816_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 42.3578 bits (98), Expect = 4.979e-4
Identity = 26/88 (29.55%), Postives = 42/88 (47.73%), Query Frame = 0 
Query:   66 KVLPDLSEKDVECSNTNDDSKLFFIPDKNKIRTSEECREIREKQLHLNSRLSSGDVWYRHYYPEGGWGYIIIFVCLVVSVLNCGLQLS 153
            KV+P +  +DV  S   D S +  +  + +                   R++S    ++HYYPEGGWG +++   ++V VL  GL LS
Sbjct:  405 KVMPVIQSEDV--STGTDGSGVTVMSARRR-------------------RIAS---IFQHYYPEGGWGVVLMVAVIMVQVLVHGLVLS 596
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BLAST of EMLSAG00000001275 vs. C. finmarchicus
Match: gi|592783356|gb|GAXK01171212.1| (TSA: Calanus finmarchicus comp2672586_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 39.6614 bits (91), Expect = 1.157e-3
Identity = 14/30 (46.67%), Postives = 21/30 (70.00%), Query Frame = 0 
Query:  124 RHYYPEGGWGYIIIFVCLVVSVLNCGLQLS 153
            +H+YPEGGWG++++F   +   L  GL LS
Sbjct:  255 QHFYPEGGWGWVVVFCSFLAQCLTTGLLLS 344
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BLAST of EMLSAG00000001275 vs. C. finmarchicus
Match: gi|592842370|gb|GAXK01115174.1| (TSA: Calanus finmarchicus comp736400_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 1.384e-3
Identity = 17/38 (44.74%), Postives = 24/38 (63.16%), Query Frame = 0 
Query:  124 RHYYPEGGWGYIIIFVCLVVSVLNCGLQLSLCGTVLPI 161
             H+YPEGGWG++++F   +   L  GL LS  G VL +
Sbjct:  882 EHFYPEGGWGWVVVFCSFLAQCLTTGLLLS--GGVLSV 989
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BLAST of EMLSAG00000001275 vs. L. salmonis peptides
Match: EMLSAP00000001275 (pep:novel supercontig:LSalAtl2s:LSalAtl2s120:535922:536551:-1 gene:EMLSAG00000001275 transcript:EMLSAT00000001275 description:"augustus_masked-LSalAtl2s120-processed-gene-5.0")

HSP 1 Score: 428.713 bits (1101), Expect = 4.867e-154
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0 
Query:    1 MNHHHMENKVSESSSLPDNLDILSSPGNSSPQKNCSSPTPSKNNFLIQDQIFYEFPKGDGIYYTHKVLPDLSEKDVECSNTNDDSKLFFIPDKNKIRTSEECREIREKQLHLNSRLSSGDVWYRHYYPEGGWGYIIIFVCLVVSVLNCGLQLSLCGTVLPIFSESSSSVEDSEEKKGVRTNVINLGRKLIIPYFIYNNIIVPWVLFMKQ 209
            MNHHHMENKVSESSSLPDNLDILSSPGNSSPQKNCSSPTPSKNNFLIQDQIFYEFPKGDGIYYTHKVLPDLSEKDVECSNTNDDSKLFFIPDKNKIRTSEECREIREKQLHLNSRLSSGDVWYRHYYPEGGWGYIIIFVCLVVSVLNCGLQLSLCGTVLPIFSESSSSVEDSEEKKGVRTNVINLGRKLIIPYFIYNNIIVPWVLFMKQ
Sbjct:    1 MNHHHMENKVSESSSLPDNLDILSSPGNSSPQKNCSSPTPSKNNFLIQDQIFYEFPKGDGIYYTHKVLPDLSEKDVECSNTNDDSKLFFIPDKNKIRTSEECREIREKQLHLNSRLSSGDVWYRHYYPEGGWGYIIIFVCLVVSVLNCGLQLSLCGTVLPIFSESSSSVEDSEEKKGVRTNVINLGRKLIIPYFIYNNIIVPWVLFMKQ 209
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BLAST of EMLSAG00000001275 vs. L. salmonis peptides
Match: EMLSAP00000003536 (pep:novel supercontig:LSalAtl2s:LSalAtl2s193:5284:117242:1 gene:EMLSAG00000003536 transcript:EMLSAT00000003536 description:"maker-LSalAtl2s193-augustus-gene-1.11")

HSP 1 Score: 51.2174 bits (121), Expect = 5.185e-8
Identity = 21/43 (48.84%), Postives = 26/43 (60.47%), Query Frame = 0 
Query:  119 GDVWYRHYYPEGGWGYIIIFVCLVVSVLNCGLQLSLCGTVLPI 161
            G    +HYYPEGGWG++I F C +V +   GLQLS     L I
Sbjct:   14 GATLRQHYYPEGGWGWVITFCCFLVELFTTGLQLSFSILYLEI 56
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BLAST of EMLSAG00000001275 vs. Select Arthropod Genomes
Match: EEB18529.1 (hypothetical protein Phum_PHUM517920 [Pediculus humanus corporis])

HSP 1 Score: 53.1434 bits (126), Expect = 4.499e-8
Identity = 22/48 (45.83%), Postives = 31/48 (64.58%), Query Frame = 0 
Query:  123 YRHYYPEGGWGYIIIFVCLVVSVLNCGLQLSLCGTVLPIFSESSSSVE 170
            +RHYYPEGGWGY+I+   + V V+N G QLS      PI+ + ++  E
Sbjct:  102 WRHYYPEGGWGYVIVICSVFVHVINHGFQLSFGILHGPIYEKFNAGFE 149
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001275 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001275 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 14
Match NameE-valueIdentityDescription
gi|592761574|gb|GAXK01192839.1|5.866e-943.64TSA: Calanus finmarchicus comp6639269_c0_seq1 tran... [more]
gi|592949209|gb|GAXK01009344.1|2.951e-757.89TSA: Calanus finmarchicus comp408960_c2_seq2 trans... [more]
gi|592949210|gb|GAXK01009343.1|2.951e-757.89TSA: Calanus finmarchicus comp408960_c2_seq1 trans... [more]
gi|592949218|gb|GAXK01009335.1|3.323e-757.89TSA: Calanus finmarchicus comp408960_c1_seq1 trans... [more]
gi|592954224|gb|GAXK01004329.1|6.287e-543.75TSA: Calanus finmarchicus comp612285_c2_seq2 trans... [more]
gi|592954225|gb|GAXK01004328.1|1.034e-443.75TSA: Calanus finmarchicus comp612285_c2_seq1 trans... [more]
gi|592859022|gb|GAXK01098540.1|3.680e-448.65TSA: Calanus finmarchicus comp6119262_c0_seq1 tran... [more]
gi|592797525|gb|GAXK01157043.1|4.979e-429.55TSA: Calanus finmarchicus comp1679816_c0_seq1 tran... [more]
gi|592783356|gb|GAXK01171212.1|1.157e-346.67TSA: Calanus finmarchicus comp2672586_c0_seq2 tran... [more]
gi|592842370|gb|GAXK01115174.1|1.384e-344.74TSA: Calanus finmarchicus comp736400_c0_seq1 trans... [more]

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BLAST of EMLSAG00000001275 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000012754.867e-154100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s120:53592... [more]
EMLSAP000000035365.185e-848.84pep:novel supercontig:LSalAtl2s:LSalAtl2s193:5284:... [more]
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BLAST of EMLSAG00000001275 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001275 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 1
Match NameE-valueIdentityDescription
EEB18529.14.499e-845.83hypothetical protein Phum_PHUM517920 [Pediculus hu... [more]
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BLAST of EMLSAG00000001275 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001275 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s120supercontigLSalAtl2s120:535922..536551 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s120-processed-gene-5.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001275 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001275EMLSAT00000001275-697122Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s120:535922..536551-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001275-684041 ID=EMLSAG00000001275-684041|Name=EMLSAG00000001275|organism=Lepeophtheirus salmonis|type=gene|length=630bp|location=Sequence derived from alignment at LSalAtl2s120:535922..536551- (Lepeophtheirus salmonis)
ATGAATCATCATCACATGGAGAATAAAGTGTCTGAGAGTTCATCCCTTCC
CGATAATCTCGATATTCTCTCTTCTCCCGGGAATTCCTCTCCTCAAAAAA
ATTGTTCCTCTCCCACTCCTTCAAAAAATAATTTCCTTATTCAAGATCAA
ATATTTTACGAGTTTCCAAAGGGGGATGGGATCTACTATACGCATAAAGT
CCTTCCAGATCTCTCCGAAAAGGATGTGGAATGCTCGAATACGAATGATG
ACAGTAAATTATTCTTTATTCCAGACAAGAATAAGATTCGAACAAGTGAG
GAGTGTCGGGAGATACGAGAGAAACAGTTGCATTTGAACTCTCGACTATC
ATCTGGGGATGTTTGGTATCGGCACTATTATCCAGAGGGCGGCTGGGGCT
ATATCATTATTTTTGTGTGTTTGGTCGTGAGTGTACTTAATTGTGGATTA
CAGCTGAGTTTGTGTGGCACGGTTTTACCTATTTTTTCCGAATCATCATC
CTCAGTGGAAGACTCCGAGGAGAAGAAGGGAGTTCGAACCAACGTCATTA
ATCTCGGTAGGAAATTAATTATTCCTTATTTTATTTATAACAACATTATT
GTTCCTTGGGTTCTATTCATGAAGCAATAA
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